Array 1 784234-783997 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTI01000002.1 Enterocloster bolteae strain AF27-9 AF27-9.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 784233 33 100.0 34 ................................. TAAATTCTTTACTATCTGGCATACAGCCAAATAA 784166 33 100.0 35 ................................. TGACTTTCCGGATCTAACTGACTGGCGGCGTAGGC 784098 33 100.0 36 ................................. CCGTGGAGGGCGGCCGTATAAGTCTGAGCCCAGTCA 784029 33 84.8 0 .........................C..TTCC. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 96.2 35 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCGCTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGATGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTGGACCATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAGAACGGTTTTGGATGTGTGCAGGGCAGGTTGGCGGTGATTTGAGGGAGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : TTCCGGTCAGTCCCCGCCCTCACAGCGAAGCAAGCTGAGAATCCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGTTATAACTAACAACACGCAGCAAAAAAGGTGGGCAAACACCCACCTTTGCCATAAAACTGTTATAGGATATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACCTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGATACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCTTTAAATGCAGTCGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39476-38978 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRTI01000018.1 Enterocloster bolteae strain AF27-9 AF27-9.Scaf18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 39475 33 100.0 34 ................................. CCGGAGCTATTGCAGATAGTATTTTGGGACGAAT 39408 33 100.0 33 ................................. AATGATGGCGGGATGATGGCCGGGCCGTATGAT 39342 33 100.0 33 ................................. CGTATGCTTATACCCCGCTACTTTATCATTAAT 39276 33 100.0 33 ................................. TGGTACGCCTGGAAGTGGTAAATCGTTGGATAC 39210 33 100.0 33 ................................. ATTATACTCGGCGCTGCAATGCCTGTAAGTACA 39144 33 100.0 33 ................................. ATCTGTAATACTAATTTTATCAGTTTTAGGTGG 39078 33 100.0 35 ................................. CGTTTAATGTGCACCATACTGGAAACAGGGTTAAG 39010 33 87.9 0 ....................AA..C.......G | ========== ====== ====== ====== ================================= =================================== ================== 8 33 98.5 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAAAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : CAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTACCAGTATCCCGGTCAACAGGGAATCCGTTAAGCACATGCCCCCCCTCATCCGTAAAAAACATCCGCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGATGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGCAGGCTGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACCGCGTACTACAATCAAAAGGAAAAGGAAATCAGGGAGAATGAAAAGCAAATTAATGATTGTATATTATATCGGCTTTTCAGTGACTTAACAGGCAGCGGGTATCCATTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //