Array 1 38-1242 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLL01000031.1 Fischerella thermalis PCC 7521 contig00031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 38 37 100.0 37 ..................................... GGGTCTTTAATTTCAACCCCATCAGCAAGTATTTTGT 112 37 100.0 33 ..................................... TCCTGGATGAATCTCAATCCACGATTCATTTAT 182 37 100.0 35 ..................................... TTGCAACCAAACTCCAACTCTATGCAAGTATTTCG 254 37 100.0 35 ..................................... TCTTGCTCATCTCCAGGGAGAAGAAATACACAGAT 326 37 100.0 35 ..................................... CGAGAATGTCTTCTATGGTGCCGAAGCTGTATCTA 398 37 100.0 37 ..................................... CTTTCCGATGATCAGAATGTTGTCTTTGTGGTCATAC 472 37 100.0 37 ..................................... ACTAGCTCGTCGACCACTAAAAGGCACCCACTGTTCT 546 37 100.0 34 ..................................... AGAGTAACGAAAAGTTACTTGAGAGCTAGAGACT 617 37 100.0 34 ..................................... GACGGTGAAGAAAGAAGCTTCACCATCAGACTAA 688 37 100.0 35 ..................................... TCGATGAAACGCCCACCTGCACCCCTAGGGTGCTT 760 37 100.0 41 ..................................... TGAGCAGATCTTCCAAGATGCTGCCTTGAAGAGCACCTCGG 838 37 100.0 42 ..................................... AGAGATCTACGCTAACTATGACCGTGATGTGGACTAGGTCTT 917 37 100.0 34 ..................................... AGTGAAATAAATAGCTGTACCCAGCTCTCCTCTC 988 37 100.0 34 ..................................... GCGCTTGAAACGTGGATAGGCATTAGCGTATTCA 1059 37 100.0 37 ..................................... ATTGATTTCTCATCCCCTACCGCATACCAACTAATAC 1133 37 100.0 36 ..................................... AGGATGGGCATTTCTCCGCGTCAGAGTTGGGTTTGA 1206 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 17 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTGACACTTAATCGATTGAATTGCATTGTGATGAAATG # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACTAAATGATTAACCCTCCACTCTTGGCGTTCTTGGCTTTTTGGCGGTTTGTTTTTTAATATTCTGTGCATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCCCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGTGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 18640-21459 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLL01000030.1 Fischerella thermalis PCC 7521 contig00030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 18640 37 100.0 34 ..................................... GCGAGAGTGTAATGGGAGCCTATGCCGAAATCGA 18711 37 100.0 35 ..................................... GGAATATTGATTCTCGATCTGGTATTTACTATAGA 18783 37 100.0 39 ..................................... TTTTCCTCCTTCCCCTTTAGATTCAAAGAATAGATATCA 18859 37 100.0 35 ..................................... GACCGATCTGCCTAATACTTCCATAAATTACGACA 18931 37 100.0 34 ..................................... GTGCTGTGGGCTGCGAAAGTGTGCAGGCCGCGAT 19002 37 100.0 35 ..................................... TCGTATCGGCACTCCCTGCCGTCCGCACCCCAGCG 19074 37 100.0 39 ..................................... TTTGTGCCCATTGCAGGAGATTTTCTTCTATCTCTGCAT 19150 37 100.0 42 ..................................... ATCCCGGCTGGGCGATCGCTCTTCGGGGATCTGCGATCGCTC 19229 37 100.0 34 ..................................... ATACAACGCACAGGACTTGACCCATGGTCGCCCA 19300 37 100.0 32 ..................................... TTCTGTAGAAATAATCTCTGTAGTATAACAGT 19369 37 100.0 38 ..................................... ACGGCAATCAAAGTTAGCGCTGGCAAGTGTGCTCGTTG 19444 37 100.0 34 ..................................... GCGATTGAAGGCAACAGCGGTGGTGCTGTGCTGG 19515 37 100.0 35 ..................................... GCGTGCCTTTAGGCGCGATCGCAGATAGAGTCTAT 19587 37 100.0 38 ..................................... GCATCACCATTGGCTAATGCGACATTGGAGCAGTTGAT 19662 37 100.0 40 ..................................... CAAAAAGAAGGACATCAAATTGTTTATGCGTACGCGGCAA 19739 37 100.0 34 ..................................... GCAGTGCTTTCAGGATTATGCTGATTATTCCCTG 19810 37 100.0 34 ..................................... AAACTAGAAATATCATTTACATCAACAGGGATTT 19881 37 100.0 35 ..................................... GGACTTGTCAAAAGTCAAGGGATACTAGACTTTTT 19953 37 100.0 35 ..................................... TATGTAAAGGAAGGTGCTGGGGCATTTGTACTAAG 20025 37 100.0 41 ..................................... TGCGTCCCCCCTTGAGTTGCAAGCAGCAGCTCAAAAGCCAA 20103 37 100.0 37 ..................................... TGACTTATTCCAACAGGGATAAACTCGCCCTCAAATC 20177 37 100.0 36 ..................................... GCTAGTAGTCGCGTCACTGGTGCTGCAATCGAATTT 20250 37 100.0 38 ..................................... CATTTTCCCTTCAGTTGGAACGCCGTAATCAAGATAAA 20325 37 100.0 44 ..................................... CCAAAGGCTTGCAGATTATCGCGAACCACATCCTGTCAAAGACA 20406 37 100.0 40 ..................................... TACGACATCGAGGACTTGGACAAATTATCCAATCCCTTGC 20483 37 100.0 40 ..................................... AAAGCACTTGCGCCAAGTAGCGGCGCTGCAAAAAAGCCAA 20560 37 100.0 34 ..................................... CCCATTGCTCCGAAACAGAGGGACGAGATGTCGA 20631 37 100.0 37 ..................................... AACTTCCCCACGGCGTTTGTAATGGGTTGTTCCTACC 20705 37 100.0 33 ..................................... TTAGTGCATCTATTCGCGCACTGAACCTGGGAA 20775 37 100.0 33 ..................................... CGATCGTGCGCGAGGTAGGCACAAGTGTCGAAG 20845 37 100.0 34 ..................................... TCGATTCCACGCTGCTTACTTTGGTGGAATTCAC 20916 37 100.0 38 ..................................... GAGATCGGGCAGGTAAGCGGCTACATTGGCTCATACGA 20991 37 100.0 34 ..................................... TTGGCTGCGTTACCCCTCTTGCTTGCAGCCACTC 21062 37 100.0 37 ..................................... AGCCTACGGATACCGACCTTATCAGCCCGGCATCGAG 21136 37 100.0 32 ..................................... TTATCAGAGTTTAAGAAAGGTATGCACAGTGC 21205 37 100.0 34 ..................................... ATGGATCAGTCAAATAGGTATGGAGTTTTAGGTA 21276 37 100.0 36 ..................................... CTGGGATTTCATCCAGGACTCAAGATTTTTTATAAT 21349 37 100.0 37 ..................................... CTCCAACATGGTTACATAGCAATAAAGAATTGTGCGT 21423 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 39 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCC # Right flank : AGCCTCAGCAATGGGGTGGGGACATCGACTCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 299-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLL01000044.1 Fischerella thermalis PCC 7521 contig00044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 298 37 100.0 36 ..................................... CGAGTTGATGACAGCAATAAATGCGCAAAAAACCAA 225 37 100.0 38 ..................................... CATCTTCATCTGCAAACATGGTCAAAGGTGGCAGATGA 150 37 100.0 42 ..................................... AAACACCGACAACCCCGACCATTGTTGCTGTAAGTGCGACAA 71 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 4 37 100.0 39 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GCCGGAGTTGTGGCGATCGCCGCTGACTGGCTGG # Right flank : CCGATCCAAATACCTATTAGCACCAATATTGCTCT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 81832-76312 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLL01000037.1 Fischerella thermalis PCC 7521 contig00037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 81831 37 100.0 34 ..................................... TACGGTAATCCTTTGATATTTCAAAATTTAGAAA 81760 37 100.0 35 ..................................... GGCGGCGAGAGATCCGGCACCAGCGAATTTCTGAA 81688 37 100.0 34 ..................................... TCTTGTATCTACAAGATTGGGCTTTGAATTTTTT 81617 37 100.0 33 ..................................... TGATTTCTTTGTGACGTTGATATTTCTTCCACC 81547 37 100.0 33 ..................................... GTAGAAACCACGGTAGTAGAAGAGCCTGCGTTG 81477 37 100.0 35 ..................................... GCCATAGGCTTTCACTAATCGACAATCACCAAAGC 81405 37 100.0 33 ..................................... AGCTCAACCAAACAACGAGACGACCTTGACAGG 81335 37 100.0 36 ..................................... AACAAATACACTCACGAAGTGAGGGCGTATCAACCA 81262 37 100.0 34 ..................................... GGCTGCAACTATGGCTAGTAGCAGTATTGCAGAT 81191 37 100.0 33 ..................................... GTATGTAACAGCAATGTGATACCACACACCAAC 81121 37 100.0 40 ..................................... GCCTTTTAAGGCTACTTAATCAATCTTTTCTAAAAGCCGG 81044 37 100.0 37 ..................................... AGTCGTGCAACCCGACTTTTGTACCCGAATTCATTGG 80970 37 100.0 35 ..................................... AGAATAATTGAACTGATCAAATTGTTCGTCCGAAA 80898 37 100.0 34 ..................................... ATCGAACCTTCGCTTGGTATGATCCACGAGATGA 80827 37 100.0 34 ..................................... GAATGGAAACAATACCCAATCCGGCTTTATAGCC 80756 37 100.0 36 ..................................... TTAAATCTTCAACTGGGGAAGCTAAGCTCGGAAAAG 80683 37 100.0 37 ..................................... GCTCAATTGCGGACGCTTAATCGATCGGGATTCCACG 80609 37 100.0 37 ..................................... ACGGCACGGGCTTGACCGCCCCTTGGCTAAAAAAGAA 80535 37 100.0 33 ..................................... TGTGTAGGCTCTCTTGTAGTCCATCATCATTTT 80465 37 100.0 35 ..................................... CCAATTCACAGCGACATAAAAAATTTCAAAGGAGA 80393 37 100.0 39 ..................................... CTTGCAGGAATTCCCTTTGTAGGAATTCCCTTATCCAAG 80317 37 100.0 42 ..................................... TGGAGCTTCTTAGTACCAGTCGCCATGCTCCGGGATGGCTGG 80238 37 100.0 32 ..................................... AATTCATGCATGGATACATTTGATATACTAAG 80169 37 100.0 36 ..................................... CAAACAGTGGATATAGATCCTGCAAAATCTCAGGAC 80096 37 100.0 37 ..................................... AACCAGGATTATTACGGAACTTTATACAGTGATGGGA 80022 37 100.0 33 ..................................... CCTATATCACTTCTGGAAAGTCTATCTGGAAGA 79952 37 100.0 38 ..................................... ATTGGCAAATTCATCTGTGTATTTACCAATTCTCAGTG 79877 37 100.0 38 ..................................... ACAGCCTTCATGATGGCATTTGCCTTGTCGTTTGTGGC 79802 37 100.0 37 ..................................... ATCAACCTAATGCAAACTGACGGTAGCAGTCAGACCT 79728 37 100.0 35 ..................................... TAGGGACACACAAATGACTATATAACTATAAAACT 79656 37 100.0 35 ..................................... CAAGGAGAAAAACGGGACTGGTACAATGCCCGCAG 79584 37 100.0 35 ..................................... CTTTGACAAAGCCAAAAAGCTAGTGCAGGACACCC 79512 37 100.0 38 ..................................... ACTACAAATTTCAAAACCAGGATTGAAAATGCGATCGC 79437 37 100.0 33 ..................................... GATTACTTGAAATCCCCCAAGGATCAAAACCAG 79367 37 100.0 37 ..................................... GCAAATTGAAGAGCAAATAAAAGCAATTGATAATTCA 79293 37 100.0 35 ..................................... AAAATATTTGGAGCGCTAAGATCAGCAGCCAAGTT 79221 37 100.0 34 ..................................... CCAAAGATATGCTACTAAAGCAGTCTTTTGGGTG 79150 37 100.0 38 ..................................... GGCGAATGTCGATGCTTTGGCGGAGCTGGTTGCTGAGA 79075 37 100.0 40 ..................................... GTGTACAACGACAATGGCATGATCACAAGCGTCCCTGGGG 78998 37 100.0 36 ..................................... ACCGGCGAGCAACCAGACATCGTGCCCAACATCATT 78925 37 100.0 41 ..................................... TAAAGAGAAAGAGCCTGAAGCTCCTGTGGGTGCGATCGCGG 78847 37 100.0 36 ..................................... CTGGTGCTGTTGGTCGTGGCATCGCACTGCCCATGG 78774 37 100.0 33 ..................................... GCGCCTCGAAAATGAGGGGACTTTCCTCCATTG 78704 37 100.0 44 ..................................... CAAGTGTGTGCTCAGCAAGTCCCTAGCGGGCGTCAGGGACTTCA 78623 37 100.0 37 ..................................... AGTAGCTGCTTGCAATTGCTGCTCGGTAACCGGGGCG 78549 37 100.0 35 ..................................... GGAAACAATAGACTTGACGCGGACGTCCGTCAGTA 78477 37 100.0 33 ..................................... CAAGCAAAAAAATCTTTTCAACCCTAACATAAC 78407 37 100.0 35 ..................................... TGCAGGTGGCAGAATTGATGGTCCAACAGCAAGTG 78335 37 100.0 37 ..................................... GAAAGACCGGCACGCTCAACCAAGGAGACCTAGATTT 78261 37 100.0 36 ..................................... GAACCCTTACAGTCTCCCAAAGCATACAGAGAAGCT 78188 37 100.0 35 ..................................... AAGCTGGATTACTTACCTTGGGTGGAGGTGAGGAT 78116 37 100.0 42 ..................................... GGTATAGCCCAATTTTGTGAACCAGAAGAGTATGGTGGTAGA 78037 37 100.0 41 ..................................... ATACCACTCCCCGGGAATTACGTATCTTCCGATGGATGGAG 77959 37 100.0 33 ..................................... GGTTTTACGATCATTTCTATCATCCTTAACAAG 77889 37 100.0 34 ..................................... CGCTTGAAAGATATTGCCGCCGATATCGAGTATG 77818 37 100.0 33 ..................................... ATCGGATTCGGGCGTGTTGATTTTCTCGCTCAC 77748 37 100.0 36 ..................................... TCCCAGCCCGGTTAGACGCCGGGCTTTTCTGTTGGG 77675 37 100.0 39 ..................................... TAAGAATGGGCGAGCGAAGGAAGTGAAAATTGATGTCAA 77599 37 100.0 34 ..................................... CAATCAAAAAACATCTGGCACGCATGTGCGCGAT 77528 37 100.0 41 ..................................... CGGGTATTCGGGACCAAGGATGCTCAGATGGTGCAGGGAAG 77450 37 100.0 34 ..................................... GTAATCGATCAGGTAGACAATCCCCTGATCGTAG 77379 37 100.0 32 ..................................... ATGGTACGGCACTAACAAGCAATACAAATAGC 77310 37 100.0 41 ..................................... CTGCATTTGATTTTCCCTGCCCTATGGCAGCGAGCGCCCAC 77232 37 100.0 30 ..................................... CGACACAACGAAATAGATTCCCCAGACCAC 77165 37 100.0 34 ..................................... CTTTGCGCTTGAAGTTGATTCCACTGCCGATATC 77094 37 100.0 34 ..................................... TCGGCACTTTATTCTATATGAAAAACAAGGAAGG 77023 37 100.0 35 ..................................... AAAAAATTCACATTCAACAGACGTTCCGCGATCGC 76951 37 100.0 41 ..................................... GGAGGATTCTAATCCCCATCCGGGCTTGCAAGCCCGGAGTA 76873 37 100.0 37 ..................................... ATAAAAATTAAATTACCACCTTGCTTGCTAACAACCC 76799 37 100.0 35 ..................................... TAGGTTCAGCCTCAGGTTCAGCCACTGACTCCTTG 76727 37 100.0 36 ..................................... GCCCTTTGTGGTTCAAATACGAGCAACGAGCGTTGC 76654 37 100.0 38 ..................................... ATTTCAAAATTCATGGATGGGATGAGAATGCCGCCCTC 76579 37 100.0 35 ..................................... TTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTT 76507 37 83.8 119 .........................G.C.GC....TT TGGTCATGAATTATGTGTGCATACATTTTTGTAGTTCGATGCCAAATCATTGTAGAGACGTAGCAATGCTACGTCTCTACGTCTGGTCATACCCGTGAATTGTAAATTCATATCTTGAT TT [76477] 76349 37 81.1 0 TCA.....GC....A.....T................ | C [76339] ========== ====== ====== ====== ===================================== ======================================================================================================================= ================== 75 37 99.5 37 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : TTAATTGCAATAATGTTTGAGATATAGGATTCCCAAATCATCCGTAAGAGACAAGCTCCCCGACTTTTCCAAAAATTCGGGGATTTTGCCTCTAATCAATTCAATGACTTAGGAATGTGATATTGAAAATTTCTAACTCAATTGTGCTACAAGTTGATTTTCCAATAGAGTTTCATTTGTGAGTAAATCCTCAACGGTGATTCGCAAAAAACGCTGTTCATCAACTAAAAACAGGATTTTAATTCGATCGCTTCCGGGAAAACCTGGTGGTGTAAGTTTAGCAATTGTCCTCGCTCCATCTCTATCATTAAGGGGTTTGACAGTGGTGACATCGTTATCAAGACGACGGGTAATCATGCGATCGCCATCAAAATAAACTTCTGTACCACCTGTGTCTGACCCCAATTCACCCATAATTAACTCAATACTGGGCTGATTCTCTACAGAAGCACCCAAAACTAACTGTACAGGCTGAGTCATGGGATAAGGTTGCCCCTCTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 33748-34003 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLL01000066.1 Fischerella thermalis PCC 7521 contig00067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 33748 36 100.0 36 .................................... ACAGGCGGAGCCAATCAAAAGCATGGCCCACGCAGA 33820 36 100.0 37 .................................... GTGGTTTCGTTTGGTGTGTTGCCGTCGTTGATGGTTT 33893 36 100.0 39 .................................... AATATATATATATAGAGCTACCGCTGGACACAACATATT 33968 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 99.3 38 GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Left flank : TTACACTATGATATGGTGCGTGCAGGTTTACTCATTTACGGACTTTACCCAGCCACACATTTGCGATCGCAAATTAACCTGAAACCTGTTTTGCAAGTCAGGGCCAGAGTCACCCAAGTCAAAACCATTGCTGCTGGGACTGGTGTGAGTTACAGTCATCAATTTATTGCCAAGCAAGAAATGCGAATTGCTGTTGTTGGCATTGGTTATGCCGATGGTGTTCCACGCAATCTTTCCAACAAAATGCAGGTATTAATTCGTGGTCAAAGAGTACAACAGATCGGCGCAATTACAATGGATCAACTGATGGTAGATATCAGTGCCTTACCAGATATACAAGAAGGTGAGGTAGTCACCCTACTAGGTCAAGATGGCAAACAACAAATCTCCGCTGATGATTGGGCAAATCAACTAAACACAATTTCTTGGGAAATTCTCTGCGGATTCAAGCATCGATTACCTCGTGTCGGTGTAATTTAGGTTCCCATTGTTTCCATTCA # Right flank : TAGTCCTATTTTAAACCGTTACCCAGTAAGATTTCCAGAGCCGATTTCCGAAGTTCAGATAATTTACAGACAAAAACATCTCAATTCCTCCAAACAAAAAGCCTAAAACCCTTATGTACTAAACAACCGAAGTTCACAACACAAAAATAGGCATTTGCAGAATTTGGGCTGAACTTCGGTAGTTGCTCTTAATTCGTAAAAATTATTGCTCTAGACAACTTTTATGCTATGATAAGGAACTGATGCGGATGTGGCGGAATTGGCAGACGCGCTAGATTTAGGTTCTAGTGCCGCGAGGCGTGAAGGTTCAAGTCCTTTCATCCGCATTTTAAATTAACTAATGACAGTACAAAATTATTTTGTAGGCTTCTTTATTGCAAAGCCGCAAAGCTTACAGGGAATGAGTAGAATTCCAGAGCAGGGTGATGCTAATCCTAGCTGTTCTTTAGTAACTGTTCGCCAGAACTATTGTTTAGATATAGCCGAGAATTAGATATTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 77926-73847 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLL01000060.1 Fischerella thermalis PCC 7521 contig00061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 77925 37 100.0 37 ..................................... ACAGGGCATTAGAGAATTAGCGAAATTGGATATTTGC 77851 37 100.0 37 ..................................... ACTTGAAATCTCAACTTTCTCAACTTGCAGGGACTGG 77777 37 100.0 34 ..................................... TTGTAGTGAGTAGGATTGCTCTGCCTGTGCTTCT 77706 37 100.0 37 ..................................... GTGCTGTGGGCTGCGAAAGTGTGCAGGCCGCGATCAG 77632 37 100.0 32 ..................................... TTGGTAGCGCGCTGTGCTAAACTGGTGGCAAC 77563 37 100.0 33 ..................................... TTCAAATTGTATTTTCGGCTCACCAAAGCTTAT 77493 37 100.0 35 ..................................... AGGTACAACACCAGACTAAGACTTACACACTCCTC 77421 37 100.0 34 ..................................... CGGCTCGCAGAGAATTTCGGGAACAAACCTGGCA 77350 37 100.0 37 ..................................... GGAAACGTTGAAAATCAGCAGCCGAAAGTTTAAAAGA 77276 37 100.0 33 ..................................... ACTTAATAATCTTTTCTGAAAGCCGGCAAAAAG 77206 37 100.0 34 ..................................... ATACTGGAGTAGCTAGCAGCGGTGTAAGTCGCCT 77135 37 100.0 34 ..................................... ATTCTTTTTAATGCTCATCCTCCACCTCTATTAA 77064 37 100.0 36 ..................................... TATTAACGGAATTAAAGTCAGTGAGGCGATCGCGAT 76991 37 100.0 33 ..................................... AAAGTCTGCGTGTGATAGAATAGCACACGCAGA 76921 37 100.0 34 ..................................... ATTTGCATTGACGTATGCGTTTGGCAACCAATAA 76850 37 100.0 34 ..................................... AATCACATGGAAGGATTAGCAATGGCTACACGCC 76779 37 100.0 32 ..................................... ATCAATCCCCCAGGCTCCCATACCACCCTGAA 76710 37 100.0 38 ..................................... GCAAACGGCTTGGGGATAGTTTTTGAACCCAGAGAACT 76635 37 100.0 35 ..................................... GTAGTATTGATGCCACTGAGTTACATCTTCCAGGA 76563 37 100.0 35 ..................................... AATGTAAGTGCGACAACCGCAACAACATCTATTAA 76491 37 100.0 35 ..................................... CAGAAGCTGGAGGCGATCCAGAATTAATCACTATT 76419 37 100.0 35 ..................................... CACTTATTGAAAGAGTTGCTAAATACAGATATCAG 76347 37 100.0 33 ..................................... TGAGAGCAGACTCCCTCTGGGCGAGAATAGATT 76277 37 100.0 36 ..................................... GATCGAGATTCTTGGATTTCGGACAGAAGTAGAGAT 76204 37 100.0 35 ..................................... AATTCATGCATGGATACATTTGATATACTAAGATG 76132 37 100.0 34 ..................................... CCCCTGGACAAAAGCTGCTGGGCGGTATCAGATT 76061 37 100.0 35 ..................................... GGGCTACCTGGAACGGTACTAGGAAGGCTAGTATA 75989 37 100.0 34 ..................................... CATATTGGCGGAAGTTATGCCCGCTCCAGTTAAA 75918 37 100.0 35 ..................................... GCCAAACAAAGAGATGGAGAGACAGGAACAACAAA 75846 37 100.0 33 ..................................... GGGCGATTATGCGCAAACACAAGCTTGAAAAGA 75776 37 100.0 33 ..................................... TATGCCTTGGCTTTCAGTGCTGGGAACCGCCAA 75706 37 100.0 37 ..................................... AAAATCAAACATGATAATGGCTACTGTACTCGGTACC 75632 37 100.0 34 ..................................... CTCAGCAACTGGCACAATCACTACTTTGCGATTG 75561 37 100.0 33 ..................................... AAAAGCCTCTTCCGCGTCACGCAGCTTGTCGAT 75491 37 100.0 35 ..................................... ACGGTGAATGGATTCTCTAGCGCAAATTCGATTGC 75419 37 100.0 35 ..................................... TGGCAACCAATAATCACTAAACTCGCTGGGAGGAA 75347 37 100.0 36 ..................................... TGGATACTATCTCAATCTCCGTTTGTGGGCGATTTT 75274 37 100.0 33 ..................................... ATTTGTTTCTCTCTTTTTCTTTGGTATGTACCA 75204 37 100.0 44 ..................................... GCCTATTTCGGACACCGGCTGTGCCTCATCGGCTCCCGGCTCAG 75123 37 100.0 34 ..................................... CCCAATTGATGCCTGTCGTACCGATGGGTGGACC 75052 37 100.0 33 ..................................... CGCGATCGCGCCAACAAAAACGTGGGAAGCCTC 74982 37 100.0 34 ..................................... CCTATGCCAAAAAATGTTTTTACACTCCAAGGCG 74911 37 100.0 37 ..................................... GGGGAAATTTCTGCACAATTTCGGATACTGGATTCTA 74837 37 100.0 40 ..................................... CCTGTGCGAGGCAAATACTTATGAGGTACACGGAATCGAC 74760 37 100.0 41 ..................................... GCTGCTGTTTTACCTGCAGGTATCTCTATCAATCATTCATA 74682 37 100.0 35 ..................................... TGCTTTCACTAACTCAAGTTTTGGCAGTGTGTGGT 74610 37 100.0 35 ..................................... CCGATCGATGCAGACGAGCTGGACGCCCCGAGCGA 74538 37 100.0 33 ..................................... AAGCTACTTTCGCCACTTCGATTTGCTGATTTC 74468 37 100.0 34 ..................................... CAACAAGAAAAAGCGAGCGATCGCTCTGACCCCT 74397 37 100.0 31 ..................................... TCATCCCTGGCATCAGCACGTGGGGAATCGA 74329 37 100.0 35 ..................................... GCCTGAAGATCCTGCGCAATCGCCTGTAGCATTAT 74257 37 100.0 40 ..................................... GCGAGCATATCCTCCAGGAGCGATTCCCGGACGCAGTATA 74180 37 100.0 36 ..................................... AGCAACCTCGAGCGAGACCACCCTCAAGGACTTCAT 74107 37 100.0 37 ..................................... ATTGTTGCCCATGGAGTTGCCCCAATCATCTCCGCCG 74033 37 100.0 41 ..................................... TTTCGATGCTGTAACTAATCCTGGATCGGGTGCAGCCCCAA 73955 37 100.0 35 ..................................... CCAAACCCGTAACCCTCCGTTGCTTTCATCCAGGC 73883 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================ ================== 57 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGATGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGATCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCT # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATACCCTGCGGGAAGCCGCTACGCGTCTACATCCCCATTTTATGCAACGCCCTGGCATTAATCCCTATTTGTTCACGTCTTGTAAACTTACACAACAACAGCCAAGCAAGACGACTATAAAATTTCTTAGTCTACTTCAAGTAGACTTGAACTATTAGCTCGCAGTTTACTTGCGGGCTTTCGGGCTTTCAGGCTTGCATATTCAAAAACAAAAAGGTAAGAGAAAAGATTTTTCCCTTACCCAATTCTCATTACCCTTGACACCGAAGCTTTAGTAAGCGCTGCGAGTAAATTGGTAATATAAGAAAATTGCAATAATCGCACCAATCACCGCTACGAACAGACCAGCAAGACTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 72303-75577 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLL01000089.1 Fischerella thermalis PCC 7521 contig00090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 72303 37 100.0 34 ..................................... AGCTAGTAATTGTCAGCAACCTTTACAGGGCAGC 72374 37 100.0 33 ..................................... TCTTTTCTCCCTTCTACTCCTGAACCTTTTCGC 72444 37 100.0 33 ..................................... CTTTGTGTATGAGTGCGCGCCCAGAAAAGATGG 72514 37 100.0 33 ..................................... AACAAACCGGAAGAGAGATTGAGTGCTTGACGC 72584 37 100.0 35 ..................................... AAAAAGCGACAAATTCTCCGCCACATCCGTAGCGA 72656 37 100.0 35 ..................................... TGTGACAAAGTGGGAAGTCTCGCCATCTCATGAAG 72728 37 100.0 32 ..................................... GACTTTTTGACTACCGAAATCCTTTCTGTAGA 72797 37 100.0 35 ..................................... GGGGATAAATGACGAAGGAAAAACAAAAGCAAACT 72869 37 100.0 36 ..................................... CATCCTTTTTTCTCAGTACCCCATCATAGGATTTTC 72942 37 100.0 33 ..................................... GCGACTAATTACAATGCTTCTCCGAGGTGCTTT 73012 37 100.0 34 ..................................... AATGAATCAAAAAAGAGTAGAAAAGCTGAGCCGA 73083 37 100.0 35 ..................................... AGCTGCTAAGTTCATAACATGTCTCCTTTTTTCTT 73155 37 100.0 35 ..................................... TATTCCCTATGTAATCTTTATCCGCTGTAAACCCT 73227 37 100.0 37 ..................................... GGCTCTCTATCCCGGGAGATGCTTTGGATCGCCTTGA 73301 37 100.0 32 ..................................... CTTTCCTCTGCCTTTCTCACCTGATGGCGAAC 73370 37 100.0 40 ..................................... TGGGGGAAGGCTACTTTATCAGCCTTCCACTCATCCACAA 73447 37 100.0 34 ..................................... CCCAAACAATATTCCCGCCTGCAATTGCGAATCA 73518 37 100.0 33 ..................................... TTTGATCGTAGTAGTAGAAAGCCCACACTGTCC 73588 37 100.0 35 ..................................... TTGAGGGAGAGGAATTGGTGGATACATATTGCTCA 73660 37 100.0 36 ..................................... GCGGCAAGTTTCAATCTTCTTTTGGATTTACACTTA 73733 37 100.0 41 ..................................... GGGAATCTTGAATTATTCCTTTGCTCCGCAACCACGCTTCC 73811 37 100.0 39 ..................................... ACATTTGCTAACAAATACACTTACACTCACGAAGTGAGG 73887 37 100.0 34 ..................................... CTTGGGGAAACCCAAAAGCAATGCCATCATCTCT 73958 37 100.0 36 ..................................... TCCTGTAACCCAAAATAAGTGTCATTTTTAATATAA 74031 37 100.0 35 ..................................... CTGGTGACTGGTGATGCTGCAACTGCTTTGCAGCA 74103 37 100.0 33 ..................................... CTGTTCAATCTCCGGTGGCAAAGATAGTCTCGT 74173 37 100.0 35 ..................................... CTGGAATACGCTCAGCACTTGAGTGCTAAACTCTG 74245 37 100.0 35 ..................................... ATTTACCCTCCATCTTGGGAAGGCATCCTGGAAAT 74317 37 100.0 36 ..................................... CTCCGGGAGTGCGGAGAATGTATCTTCGTCATCGAG 74390 37 100.0 33 ..................................... TGAACAGTTAGCTGTTCTGGGTAAGATGTTTGT 74460 37 100.0 33 ..................................... CACTCTCTGAATTCTTTTAGCTTTCAATATATC 74530 37 100.0 34 ..................................... GCAGATATTCAAATGGCTTGCTGTAGGGATTAAG 74601 37 100.0 34 ..................................... GTACCAAATATCGATTTCTTTAAAAGAGAAAAAA 74672 37 100.0 35 ..................................... GCCAGTAACCCCATAAATTTGATACACAACCTTAG 74744 37 100.0 35 ..................................... ATCAACGAAATGATGGGCTTCTAACGACGCCCACA 74816 37 100.0 35 ..................................... CCAATTAACGACGCTGCCATAGCTTCTCTTCTCAT 74888 37 100.0 35 ..................................... GAGACAAACGACGCACGCAAAGAAGAGATTGAGAA 74960 37 100.0 38 ..................................... GCATATTTTCCCAGCGACAATGAGCGCTCCTGATCGCG 75035 37 100.0 36 ..................................... AGTATTTCAGTATCGGCAACGTTCAAATGGCATGGA 75108 37 100.0 34 ..................................... GACTCGTAAAGCCGCTGTGTATCGATAGGTGTGA 75179 37 100.0 35 ..................................... ACGAGCATTGTGGAGCGTCTTAACTGCTTGGGGTA 75251 37 100.0 35 ..................................... CTTTGACGCTGCCTGATTTCAAAAGCTACTCCAGG 75323 37 100.0 34 ..................................... GCTGTTGCAAAGGTGCGATCGCGCTATTAATCAT 75394 37 100.0 33 ..................................... ATGGGGGCGATCGCATGGCTTTTATCAGTCGCC 75464 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 75541 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ========================================= ================== 46 37 99.9 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : GTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //