Array 1 282116-280258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080328.1 Halomonas piezotolerans strain HN2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 282115 28 100.0 33 ............................ TCAGGTTGGCAAAGAATCCGCCGGATGATTGCC 282054 28 100.0 33 ............................ CAAGCCGCCGCCGGGCACTACCTCGCGGACGAC 281993 28 100.0 33 ............................ TCATCCACTGGCCCGGCTCCACGTCGCGCAGGT 281932 28 100.0 33 ............................ CGGCGTGTTGCCGACGCGGGCGTTTCCGGGGGT 281871 28 100.0 33 ............................ CGCATGAGGCTGTGCGTTTTAACGCAGAGGGGT 281810 28 100.0 33 ............................ TGGCCTGATTAACGAGATCATCGAGCGCCCGCA 281749 28 100.0 33 ............................ CAGGTGCGAGCGATTCCCATAGGTTGCGGGCAA 281688 28 100.0 33 ............................ TAGACACGGCGCTGATCCTCACAGAAGGCCAGG 281627 28 100.0 33 ............................ TTGGGCATGCAGCGCTGCAGTTGTTCCGGTGTC 281566 28 100.0 33 ............................ TGACCAGAACCGCAAGATGTGGCCGATGCTGTC 281505 28 100.0 33 ............................ CGGCTGTCGATTCCTACCGCACGCTATGGGAGC 281444 28 100.0 33 ............................ CAGACTGTGGGTGATCAGTTCCGTGGCGGCTTT 281383 28 100.0 33 ............................ TCCTCAGGGAAAACGTTTGCGGAGGTATGCAGT 281322 28 100.0 33 ............................ CATCCCATAGATAACCCAGGCAAAGAGCAGAGC 281261 28 100.0 33 ............................ CGCCGTTGCTTTGTTCCGGTTTCGATTTTGGAT 281200 28 100.0 33 ............................ TACCAAGCCCTGACGCTTAGCGATGACTAGCTC 281139 28 100.0 33 ............................ CGACTACGACACGCTAGCCGTGGCTCGTCGCAT 281078 28 100.0 33 ............................ CAACTTCCGTTTAATCTCGGGCTTATCCATCAC 281017 28 100.0 33 ............................ TATAGCATGTTAACGTGGGATATATCATCAAAT 280956 28 100.0 33 ............................ TTTAGCAATCTGCTCGGACGGAAGCTCAGCGTT 280895 28 100.0 33 ............................ TAGGGCCAGCCAGCCCACTGACAACACAGTTGA 280834 28 100.0 33 ............................ CGAGGCGACCACATTTACCGCTACGCTTGAGTC 280773 28 100.0 33 ............................ CAGCGAAAGCCAAGTGTTTAGCGGGCGATATGT 280712 28 100.0 33 ............................ CCGTTCCCGCGTGGTGGTCTACAAGGATTGGCC 280651 28 100.0 33 ............................ TTCTTGCGTGCTGGTGTTTGCCACTGAGGAAAG 280590 28 100.0 33 ............................ CTATCTATCCGGTCTGGTGGGATTGCTTCTTGT 280529 28 100.0 33 ............................ CAGCGGGGGCGTGCGTCGCATCATCGCGCCGGA 280468 28 100.0 33 ............................ TGGGGACTGGTTCTGGGTGGACGGGGTGTGTAA 280407 28 100.0 33 ............................ TGATCACCGGCAGCGAAGTGTGGGCGGCGGAGG 280346 28 85.7 33 ...........G.T.......A.T.... TGAGCGAGCAATGATAGCGCCAACACCAGCGCC 280285 28 85.7 0 ...........G.T.......A.T.... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.1 33 GTCTTCCCCACACCTGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCATCTCTGTATCGACCTCGCGTTTAAAATGACCCGGGATATGGCGGGTCGATATAACAAACATAAGGTAGCTACTGCATTTCGAGAGCGCGTTATCGAAATGAATCTGCTGGAGAAATTGGCTGAGGATATACCCAACATATTAGGGGTGAGCCGTGCTCGTCGTCGTCGCAAATGATTTACCACCTGCCGTTCGTGGCAGAATGAAGCTTTGGTTTGTAGAGCCACGAGCCAATGTGTTCGTTTCAGGTGTCAAAGACTCTGTTGCCAAAACGGTGGTTGACTACCTCTTCCAGCACTGCCCACCTGAATCGGGCGTCACTATTTTTCGTTCATTGCCGAAGCCGCCGGGATATGAAGTACGTTCGATTGGACCTACCCGAAAAGCCCTAACTGACATTAGCGGGCTTCAACTAGTCATTGAAACCCTCAAAACGCCATAAACCATACATCTTGTACTGATCCCATAGATCTTTAACAATATACTGCT # Right flank : CATACTCTGGAAGAAGTGGTTGCAATCGGCATAGCAGCATGGCCCCCGGCAGGCTGTGGAGGACATGGGACACGACTTCCCAGACTTGTGATTCACGCCCACCTAGCAGAATCGGCTTGTAAGCAGTATTACTGGCTTTGCGGTAGGTACACTGGACGATTCATTCCAACTACTTAACGGTGAGTTCGTCATCTACTGCAATGACGATGATCCGGCCAGGTAAGTCATCCAGGCTTCTGTCCACGACAAGCAAATCTCCATGATGGATACAACCTCCCATCATGGAGCCTCCCTCGGTACGCAAAAAGTAGGTCACCGTTGGCCTTTTTACGACATAGCTGTGAAAATCTAGCTCTGTACCGAGGTGATCACGGGCCATTGCGGGAAAGCCAGCCCTAACGGCGCTGGAGAACATAGGAAGAGGCTAAAAAACTGCCAAAGGGTCAGCTTTCCCAACAAACGAAGCATTGAGTGACATGGGGGAGTCCCTCCGCAATTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACCTGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3293653-3292831 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080328.1 Halomonas piezotolerans strain HN2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3293652 29 100.0 32 ............................. CTTCCGTGCGTTGTGACCGCCGTATCTACCGA 3293591 29 100.0 32 ............................. ACGATGGGTCGTATGTTGACGCCCAGGGCGGA 3293530 29 96.6 32 ...C......................... GCGATATGCAGCGCGAAGGCAGCTATCAGCAA 3293469 29 100.0 32 ............................. GCCATAGGGCACCTATGGGACGGTAGCGCCAG 3293408 29 100.0 32 ............................. CGCTTAGGTCGTCTGGTTTACGTACTTTGTCC 3293347 29 100.0 32 ............................. GAAAACATCATGGTCTACCTTCCCCAGAAAGG 3293286 29 100.0 32 ............................. TCCCTGCTCGGGACGCTGGTCGGCCGCCTCGT 3293225 29 100.0 32 ............................. CAACAGGCATCAACGAGCTATCGGAAATGATC 3293164 29 100.0 32 ............................. CGGAGCGGGGAGAATCGGCGGGGGGCGTTAGC 3293103 29 100.0 32 ............................. GAGTAAACGACGATGAGCGATACAGTCTTACA 3293042 29 100.0 32 ............................. CCAACCAGGGTGATAGATGCGGTGCTGGATAG 3292981 29 100.0 32 ............................. GGCAACAAAGACCGCCCTTGTGGGCACTGCTT 3292920 29 100.0 32 ............................. GCTTCGTCTTCGTCCAGGTTGGAGAGCTGAAA 3292859 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : AGATCGAACCGCCACCACCGCCAGCCGACGCCGTGCCTCCCGCCATCCCCGAGCCGCCGTCGGAGGGCGATAGCGGCCACAGGAGTCAATAGCATGGCTATGCTTGTCGTCGTCACCGAAGCTGTACCGCCCCGCCTGCGCGGACGACTTGCCGTCTGGCTGCTGGAAATTCGCGCCGGCGTTTATGTCGGCGATGTCAGCAAACGCATTCGCGAAATGATTTGGGAGCAGATAGAAGTGCTGGCCGAGGAGGGGGGCAACGTCGCCATGGCCTGGGCCAGCAACCACGAATCCGGCTTCGAGTTCCAGACCTTTGGCGACAACCGCCGCGTCCCCATCGACCATGATGGACTACGCTTGGTGCGCTTTTTACCGTCTATTGATAAGTAACTGTTTTTGATGCTCTTTAAGAATATAGATCTGTTCAAAAAATGATCAAAATCGCCGGTGGTTTGTCCGCTGGCGATTTTTCTTTTTGAAAACAAGTGGCTACAATTAGT # Right flank : CACCGCCTAGCCTTGGCGGCTATCAAGAACTGTAGTGGTTCAATAAAACCGGACGCCAAGCGTGATCGAGCTAATGTTGGGTTTCATAGTAAGGCTCTTATCGATAACGCTAGGTGGGACGCTGAAACCGCCGCCGCGCTTGCTCCACCCGTTCACGCGTGATGCAGTGGAGCGAGTGGTCGTTGACCAACCCCATGGCCTGCATGAAGGCAAACGCGGTGGTGGGGCCGAAAAATTTCCAGCCGCGTTTTTTCAGCTCCTTGGCCATGGCAATGGATTCTGGCGAGGTGGACTGCGATTGGGGGGCCACGGTGTCATTGGGCTCATAGCGCCAGAAGAACGCCGCCAGCGACCCCTCCTGCTCGACCATCTCTTTTGCCCGTTGGGCATTGTTGATGGCCGCTTCGATCTTTCCGCGGTGACGAATGATGCCTGCATCCTGCAGTAAGCGCTCCACGTCCTCTTCCGTAAAGCGGGCGACGTGGTGGAAATCGAAGTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3305909-3304169 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080328.1 Halomonas piezotolerans strain HN2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3305908 29 100.0 32 ............................. GCAAAGCGTCGTCAATGGGAGTCATGTCGTAA 3305847 29 100.0 32 ............................. GCAATGATCCACAGGAACGGGGTGAGGCTCAT 3305786 29 100.0 32 ............................. CGCGGTTATGCCGTGGTTCGCTACTCAGGCGT 3305725 29 100.0 32 ............................. CGTAGAATCACCAGCCTGTCACTGACAGCCGG 3305664 29 100.0 32 ............................. CTGCTCAAACAGTGCAACGAGCTAACGCCCGC 3305603 29 100.0 32 ............................. TGCTCGCCAACCGTCACCATGTCCGCGTCTTG 3305542 29 96.6 32 ..........T.................. GTAGCGGTTGCCGCCGATATGATGGCGGGCAG 3305481 29 100.0 32 ............................. CGTTCGACCCAGGTTCGTTACCCGTCGCAGAG 3305420 29 100.0 32 ............................. TTGTTTAGCTGGCCGTCCACCATTCTTTCGGT 3305359 29 100.0 32 ............................. TTGTTTAGCTGGCCGTCCACCATTCTTTCGGT 3305298 29 100.0 32 ............................. GTAGAGACGTACACCAACCTCTACATCGAGAC 3305237 29 100.0 32 ............................. GGCGTCGAGCACCTGAATAACGTGTTCAACGG 3305176 29 100.0 32 ............................. CGCTGTCCTTAGCGCCGATATGGCGGGCCGAT 3305115 29 100.0 32 ............................. GTCTTGGCGATAATCATTTAAAAATTCATCGG 3305054 29 96.6 32 ............................T ACCGCGGCAAGATCACGCCCACCGAGAAGCGC 3304993 29 100.0 32 ............................. CCGTGCGCAACGCCGTACTGCGTAACCACCAC 3304932 29 100.0 32 ............................. GCGTCGTAGTTGGCGTAAATATCGAGCGCAGG 3304871 29 100.0 34 ............................. CCGATATTCCACGGTAACGGTTCCCGCCGTCGGC 3304808 29 100.0 32 ............................. TCGATATCTTCGACGATCGTGGGCATCAGTCC 3304747 29 100.0 32 ............................. CGTATCGACCCCGATACGGGCGACGTTGTAGC 3304686 29 100.0 32 ............................. TGGGCGGGCCGGACTGTGCGGGCGCGCTACTC 3304625 29 100.0 32 ............................. CGACGGTTGCCGCCGGTAACGTGGTCGCTATT 3304564 29 100.0 32 ............................. ACACGCGCCAGTTTTCGCGGACGCTATTGATG 3304503 29 100.0 32 ............................. CCTTTATCGATGAGGGCAACTGGAACTTCCAT 3304442 29 100.0 32 ............................. TCGGCAAAAGGGGCGCGGTCACATCGAAAGTG 3304381 29 100.0 32 ............................. ATGCGACAGTCATCCAGCAGTTGATAGACGAC 3304320 29 100.0 33 ............................. GCTTTCTAGGTCGCCAGTGTGATCGGCTGGGGC 3304258 29 100.0 32 ............................. TTGACTATAAAACTGACCAAACTATGCCAAAT 3304197 29 89.7 0 .........G......C...........A | ========== ====== ====== ====== ============================= ================================== ================== 29 29 99.4 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : GCCAATATCAGCGCCAGCGGGACATCATGATCAGCTGGGTGCAGCGCTCCTTTCCCGAAGGGACGGGCATTAGCTACCCCCAGGGCAGCTTTTTGCTCTGGGTAGAGTTACCCGCCGCCATAGATTGCGTGAAGCTCAATCAGCGTCTGGCACAGCACGCCATCCACGTGGCACCGGGCTCGCTGTTCTCCGCCTCCGGCAAGTTCCGCCAGTGCCTGCGGCTGAACTACGCGTTTACGCTCACGCCTAGTATCGAAGCCGCCGTGCGAACGGTAGGTGAGCTGGCCACCGAGATGGTGGAGGAAGCGCAGGCGTCGCTCGTCTAAAAACGATACATACTCCTACCATCGAACGAGGCTTGGTGCGATTTTTATAGTTTTTAGCAACCTGCTGATTTTATTGTTCTTTAATAATGCTCTTCTGATCAAAAATCGACCTGAACCGCTGGTGGATATTCTGCTGCCTGTTTTTATCTTGCAGAACAGTCATCTACAATTAGT # Right flank : AGTCATTGGAAGCGTTTGCTAACTGAATATTCATATCCAAGGCTTATGTATGGTTCAACGTGTTTCTGGGGGTATGAGTATTTGAATATTTATAACCCTGGAGTTATATTTTGGGTGGCGAAAGAGAGAAAGGAGGAGGGGTGAAAAGCAAGGACCTCATCAAGGAGATGGAAGCCGATGGGTGGTATCTAGACCGTGTTAGTGGGAGCCATCACGTATTCAAGCACCCTACCAAGCCCGGCAGTGTGCCCGTGCCTCATCCGAAAAAGGATTTGCCCAAGGGCACCATTCACAACATCAGAAAGCTCGCGGGGCTCAGGTAGCTCGGCCGTTCAGGAGGTAAATCATGCAATATCCGATTGCTATCGAATGGGGCGATGAGCACACCGCCACCGGTATCGTCATTCCGGACATTCCCGGGGCCGTGACAGCGGGTGACACGACCGAACACGCTTATGAAATGGCGGTGGAAGTAGCTCATATCCAGCTGGAAGAGTTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //