Array 1 3241815-3243110 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022557.1 Geobacillus subterraneus strain E55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3241815 30 100.0 38 .............................. ATGTGTAGGAGGTAATGAACAATGCCAATTAACTATGC 3241883 30 100.0 35 .............................. ATATCTACAAATATCTGATGTTCGCATATCGAGCG 3241948 30 100.0 37 .............................. ATAAAAACTAAAGGAGGCATCACTATGAACACTGTTC 3242015 30 100.0 37 .............................. TATAATAATCACAGAAACTACATAGGAGGGTGATTCG 3242082 30 100.0 36 .............................. AACGCTTCAAAGACAAAGCGGAAGCTATTGAACGTT 3242148 30 100.0 39 .............................. TTCATTCACGAAGGGCGATACCACATTGTCGAGGTTGAC 3242217 30 100.0 37 .............................. AAGTGCAATATTTCATTAGGCATGAGCTTCCGTCTCT 3242284 30 100.0 36 .............................. TGCTGCAAGTTTCCTTGCAACCGGCCAAATATCTTC 3242350 30 100.0 36 .............................. ATCGTGACGAGTACCATGTCGCCATCTTTCACTTGT 3242416 30 100.0 35 .............................. AGGGATCGCTCCCTTTATCGCCGGCATGAATGCAT 3242481 30 100.0 36 .............................. ACGTTTCGCGACTTGATTAAAGGGATTTTGCACGGT 3242547 30 100.0 37 .............................. CGTCGTGGGCAACGTCGATGCAAGCGATCGGGAACCA 3242614 30 100.0 35 .............................. AAGGGAATTGAAGCCTCATCGAAAATAAGGAGAGC 3242679 30 100.0 35 .............................. CATTGTGCTAGAGCTAGCCGCTCCATTGACCGCCC 3242744 30 100.0 35 .............................. TTAAAAAGGAGGGAACATATCAGCAAGTTATTGAG 3242809 30 100.0 37 .............................. TCCTAGTCTTCCACTGCGATAATATTTAAATGAATAA 3242876 30 100.0 36 .............................. ACAAGGAGGAACAAGTCTTCTTTCGGTTTCCCGTCC 3242942 30 100.0 41 .............................. TCACAAGACTTGAAACCGTTTGACACCGACAACCTGACCGG 3243013 30 100.0 38 .............................. TAGTAAAGCCCAACACCGCACCGACAAAAGTAGACACA 3243081 30 90.0 0 ....................A...C.G... | ========== ====== ====== ====== ============================== ========================================= ================== 20 30 99.5 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCGCCAACCCATCGGTTCACTTGCCTCCCGAGCGGCTCGCCAAACTCGCCTCCGTAGCGTCAGCGCCGCTGCAGCCAGTGAAAGAAGCGATGGCGAAAACCGAAAAAGCGGGATACCAAGAGGCGATCATCAGCCGACTGCTTGGAGACATAAAAAGTTAGCACTCGCCCTTGTTCATGCAAGTATTGGTTATTTATATTCGTCTTGCCCGCGATGGATGGGCGGGCGGCGCCCGGGTCTTATTTACCGCATGCCGAGCGTTTGCCCTCGCTTAGGCAAACAGCAATCGGCAAACAAGGCAAGCCACAAATGCTAAGAAGCAGTCTTTGCTTGTCGTCGACCTCCAATCACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGATAGATTTGATTGACAGAATCTTCGAAACGTGTTATGCTGAAGTTGCCGCTGCAGGAGAAAGCTTGTTATGGCAGCGGTTTTTGGGG # Right flank : CGTCAGCGCACTATTTTGGCGGAAAGGTCCGTATTCCTCCGCTTTCTATCTGTCCTATCTTCCTCGAAAAATTTTGACCCACACTGGCTAGTTCAGCCCATTTTTCATACGAAGTTTTCTAGGAGGTTGGTGATTTAATCCTAGATACGGCTTTGCAATGTCACTTCTCAATTAGAAAAACCTTGTTGCATCGATCCTGCTTTTCGCCCATTCCCCCAATTGAGTAAGGGAATCAGCCGTTTTTTACCGCTCTCCTAGGGAGCCGGTGATTTACTCACGCAACCGCTTCTCAGAATCATTTCTCAAATAGAAAAACTAGTTGCATCAGCTTCTATGTTCACGCGCTCCGTCATCGATCAAGGCAAACAGCGGTTTTTCACCAGCCTCCTAGGAGACCGGTGATTTAAGGGAGCAAGCCGCTGATCAAGCCCGTTTCTCAAATAGAAAAACCTTGTCGCATCAGGATCATCTTTCAAACGATCCCTCATTGCTCAAAAGAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 3252814-3255159 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022557.1 Geobacillus subterraneus strain E55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3252814 30 100.0 37 .............................. ACCTACCGCGTCTGAATACTCGATTTGGTGAAGCTCC 3252881 30 100.0 35 .............................. AGTCTTGTTGCGCTTCGATTGTCCAAGTAGCTTTG 3252946 30 100.0 35 .............................. CTCCCAAAGTTCTTCCTCCTTCACGCATATCGCCA 3253011 30 100.0 36 .............................. GGTGTTTGTATTGGTCGTTTTCTTGTTCCATCCGTT 3253077 30 100.0 37 .............................. ATAAAAACTAAAGGAGGCATCACTATGAACACTGTTC 3253144 30 100.0 37 .............................. TATAATAATCACAGAAACTACATAGGAGGGTGATTCG 3253211 30 100.0 36 .............................. AACGCTTCAAAGACAAAGCGGAAGCTATTGAACGTT 3253277 30 100.0 39 .............................. TTCATTCACGAAGGGCGATACCACATTGTCGAGGTTGAC 3253346 30 100.0 37 .............................. AAGTGCAATATTTCATTAGGCATGAGCTTCCGTCTCT 3253413 30 100.0 36 .............................. TGCTGCAAGTTTCCTTGCAACCGGCCAAATATCTTC 3253479 30 100.0 36 .............................. ATCGTGACGAGTACCATGTCGCCATCTTTCACTTGT 3253545 30 100.0 35 .............................. AGGGATCGCTCCCTTTATCGCCGGCATGAATGCAT 3253610 30 100.0 36 .............................. ACGTTTCGCGACTTGATTAAAGGGATTTTGCACGGT 3253676 30 100.0 35 .............................. CACGAGCGTTTTTCTCGCCATTGACGACATTGATT 3253741 30 100.0 36 .............................. TTTCCCCACGGTTGTTTTCCGTGGGGCTGAAATTCC 3253807 30 100.0 36 .............................. TAGTATGAAAAATCGTCACTTTCAAGGGGGAGGGGT 3253873 30 100.0 36 .............................. AATTGTCATACAAATCTCTCCTTTTCATGATTGATT 3253939 30 100.0 35 .............................. TACAGCACTTTTTCCGGCATCGCATGATGGAACAC 3254004 30 100.0 38 .............................. TTCTTTTGCTTGTTTGCGTTCTAGCCATTTAGTGTAGT 3254072 30 100.0 34 .............................. TTTCACTTCTCGCGGTGTACGTACTAGGGTTAAA 3254136 30 100.0 35 .............................. TTTCAAGATCTGTAAAGTCAGCTAATTGCATTAGC 3254201 30 100.0 37 .............................. TTATTGCGCTTCTCCATATCCATTGTATTAATTCGGA 3254268 30 100.0 36 .............................. TTTATTTTCCTCCTTTTGTTTTTTCTAATTATATTG 3254334 30 100.0 36 .............................. TGAACGCGAAGCGCAAAGAGCAAGCCAAAGCAGAGC 3254400 30 100.0 37 .............................. AATCATCCTCCCTATTTAATTTTCAATGTTCAATTGA 3254467 30 100.0 36 .............................. CCAGCAAATTTTTTCATGAAATTGTTGCATTTTGTC 3254533 30 100.0 35 .............................. TGCGTCGGAGCTGTGGCACAGTGACGGCGAGTAGC 3254598 30 100.0 36 .............................. TCTAATCCGTATAGATAAATTGTGAAATCATCTTTC 3254664 30 100.0 35 .............................. GGTTCGTTCAAAATTAACTGGACTGTCCCCGGAAG 3254729 30 100.0 38 .............................. CGGTAAACCTCGACGCGGTATTCGGGGAATTCGTTTTC 3254797 30 100.0 35 .............................. ATTGTATGTGTTTCTGTTTTTTTGCTGGTTTTTGT 3254862 30 100.0 36 .............................. TGCTAAGAGCACGATGATCTGGGATAAGCTCGTGAC 3254928 30 100.0 38 .............................. ATTCCCTAATCAAGTTCCGCCAGCCGTTTTGGATGTTG 3254996 30 100.0 36 .............................. CCCGATCCGCTTTAATACCAGTCATTGCGTCAGCCG 3255062 30 100.0 37 .............................. AATACATCGCCGTGCGGGCGCGGAAGGTGGCGTAGTC 3255129 30 76.7 0 ..........C..T.....C.A...TTT.. | C [3255157] ========== ====== ====== ====== ============================== ======================================= ================== 36 30 99.4 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGCGGCTTGAACAGCGGAAAAAAGAGCAGGCATTGCTGGAACAGCGGAAGCGCGAGGAAGAAGAACAAGCAAAACTTGCCCTGCTTTCCCCAGAAGAACGGCTTGTCGCTGAAATCGTGCAGCTCACCGACAGCCAAGCCGATCAACAGCGCAGCAAAGACGCTCTGTATAACCAAGTCATCCAACAACAAAACAAACAAGCCGCCCAAGCGCTGCTTGCGTATTGGCAACGGATCGGCCAATGGGGAAAAAGCGCCAGCAAAAAGCAAAAAGAAAAAATCAACGTCCTTCAACAGCTGCTTAACGGCTCATAACCAAACCGCCTTTCGTTTGTCGTCGACCTCCAATTGTGCAAAAACCCTAGGGGGTCGACGACATTGGCTCTGATCGCCTGATCCCTACAGTCATCAAGAATAGATTTCATTGACAGAATCTTCGAAACGTGTTATTCTGGTGATGACATTGAAGAGAAAAGGTTGATATGACAACACTTTTTGGGG # Right flank : CTGTGAGCAGGATGTTGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCGTCAAGTTGAGGTGATTGAATGGCGATTGACCATGATCGGTTGTTCAAAGAGCTGATCCGCACGTTTTTCGAAGAGTTTCTGCTCCTCTTTTTCCCCGATATGCACGAGCATATCGATTTCCACCATCTGTCCTTTTTATCCGAAGAGCTGTTTACCGATGTGACGGCCGGTGAAAAGTACCGCGTTGATTTGCTGGTCGAGACGAAGCTGAAAGGCGAAGACGGGCTGATCATCGTGCACGTGGAAACGCAAGGGTATGTCCAGCCGTCGTTTGCCGAGCGCATGTTCCTCTATTTCAGCCGCTTGTATGAAAGTTACCGGACCCGCATCGTTCCGATCGCCGTCTTCCACTATGATTCCCTCCGCGAGGAACCGTCTGTGTTTTCGATGGAATTTCCGTTTGGGGAAGTGCTGCATTCCGGTGGCGTTGCGGAAGAAGCAGTGGCGGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 3265313-3267211 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022557.1 Geobacillus subterraneus strain E55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 3265313 30 100.0 37 .............................. TCCGAAATCGCGAAGACATATAACACAACAGTAGCAC 3265380 30 100.0 36 .............................. CTTTGTGACGTCATAGTCCTCTTTCGACGCGCCTTC 3265446 30 100.0 38 .............................. TTTTCTACCGGCTCGCCTCCCACGTAATGCTCTAAAAC 3265514 30 100.0 36 .............................. TACGCTATGTGTACATTGCTGTGGAAGGCAGTCCAA 3265580 30 100.0 38 .............................. TAGCTGGAACGGTACAGCATGGGTGCGTACGGGTGGCG 3265648 30 100.0 36 .............................. ATTGGTGCCACTGTCGCCATCGGATGCGTAATGAAG 3265714 30 100.0 36 .............................. CACGGTGAAACCTGGAGATACACTGTCTGGAATCGC 3265780 30 100.0 35 .............................. TTGATAAGAATTTTCGAAACGCTTCCTTCCCCAGC 3265845 30 100.0 35 .............................. ACGGCAACGTCATCCCATTGACGATGGCCGGTCAG 3265910 30 100.0 40 .............................. ACGTCGAAGTATTGGCAAAATCAGCCGATTAAGAATTTCA 3265980 30 100.0 42 .............................. AGTGGTGGGTAGTTGACTTTCTTGCATTATCCTCGGATTTCG 3266052 30 100.0 38 .............................. AGGGGATTGCTCCCTTTATCCTCCGCCCGAATGTTCAG 3266120 30 100.0 37 .............................. CATAAATAATGCACTTTCTTTTTTTTCAGTACAATTC 3266187 30 100.0 37 .............................. ATAGGTTCGGTTGTAGACTCCATAACTAAATATGCGG 3266254 30 100.0 38 .............................. AACAAACCCTCAAACGGGAATTGGAAAAGTGGTTCAAA 3266322 30 100.0 37 .............................. ACTCCTTCTCGATGCAGTCCAGCACAGGTTTTCCACC 3266389 30 100.0 34 .............................. ATACCGTATGTTCTTGAAGAAGTTTTTGATTTTC 3266453 30 100.0 37 .............................. TGCTCAATTTCTTTTAAGCCGTAGATTTCGTCCAGCT 3266520 30 100.0 35 .............................. CGACACAGCATGTCATCGCAACGGACGGGTATCGC 3266585 30 100.0 35 .............................. AGCCGAAGCTCTGGAAAAGTATTTGCCAGTTCCAC 3266650 30 100.0 35 .............................. AAGGTGCCGCTTGTATCAAATATGAGGGACACCTA 3266715 30 100.0 35 .............................. GATGTACAAATGAAAACAAGCACAGGGACATTAAC 3266780 30 100.0 37 .............................. TTTTTCCTAATCCTCCTAAAGCCGCCGGTTTCTCTTC 3266847 30 100.0 38 .............................. TGCAATGATTGGTAAAGACGCTAGAGAGATGGAGGAAT 3266915 30 100.0 39 .............................. AATAATTCATAAAGGAGTGTATCAAATGAAACGCATTTA 3266984 30 100.0 35 .............................. CTCGGTTCGCCTTGCGTATTCGGTTGCCCTCCATC 3267049 30 100.0 35 .............................. TCCTTTGCTTGATATGTCCCGGCTTCTGCGTATTG 3267114 30 100.0 37 .............................. AATACATCGCCGTGCGGGCGCGGAAGGTGGCGTAGTC 3267181 30 76.7 0 ..........C..T.....C.A...TTT.. | C [3267209] ========== ====== ====== ====== ============================== ========================================== ================== 29 30 99.2 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATGAAACGATCGATGGCAAAAAGAAAACGCATTTTTTCGGGCCGGACGACGACGTCTTTCCCCACCTCGTGGAGCTGAATTTCCGCCATAAATACGAAGCGTACTATGGCGTCGAGCCAGAAGAGCGATTGATGATCGAGCCTGTCCATGTCCACCACCGTCATCGAGTGGTAACAAGATTCAAAGATATGTATATTACCGGCTGGTTAGGCCATTATCGTCTTTCCTCTTCTCCCGAACAACTGACGTTTCTATACCACGTTGGCCTAGGCAGCCGCAATTCCCAAGGATTCGGCATGTTTCGGTTAATCAGCGAGTGAGCCATTCTAATTGTCGTCGACCTCCAATCGTGCAAAAAACCTAGGGGGTCGACGACATTGGTTTTGATCGCTTGATCCCTACAGCCATCATGGTTGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATAATGACGTTGAAGAGAAAAGGTTGATATGACAACACTTTTTGG # Right flank : CTGTGAGCAGGATGTTGCCTTGGGGACGGCGAATAGAAAAAGAGAGACCGTCAAGTTGAGGTGATTGAATGGCGATTGACCATGATCGGCTGTTCAAAGAGCTGATCCGCACGTTTTTCGAAGAGTTTCTGCTCCTCTTTTTCCCCGATATGCACGAGCATATCGATTTCCACCATCTGTCCTTTTTATCCGAAGAGCTGTTTACCGATGTGACGGCCGGTGAAAAGTACCGCGTTGATTTGCTGGTCGAGACGAAGCTGAAAGGCGAAGACGGGCTGATCATCGTGCACGTGGAAACGCAAGGGTATGTCCAGCCGTCGTTTGCCGAGCGCATGTTCCTCTATTTCAGCCGCTTGTATGAAAGTTACCGGACCCGCATCGTTCCGATCGCCGTCTTCCACTATGATTCCCTCCGCGAGGAACCGTCTGTGTTTTCGATGGAATTTCCGTTTGGGGAAGTGCTGCAGTTTCGCTTTTTTCCGGTGGCGCTGCGGAAGAAG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3268344-3268709 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022557.1 Geobacillus subterraneus strain E55-1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3268344 36 100.0 30 .................................... AATGATGGCTACGACTTTGCGAATGGATCA 3268410 36 100.0 30 .................................... GAACGCTGGCCGGATTGGGTTGCCAGTGCC 3268476 36 100.0 30 .................................... AACAGGCTTCTCAGGATGTTGAACGTATCG 3268542 36 100.0 30 .................................... AAATAACAAAAGAAGAATACGAAAAAGAAT 3268608 36 100.0 30 .................................... GATGATGATTTATACTCCCCCGGCAAGAAA 3268674 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Left flank : AGGCGAGGCAGCGGCTGCTGCTTGGGTTTTTTGAGACGTACGTGAAGTTGACGGAGGAAGAGGAACAACAGCTGCAAAGCGAGGTGAAGGCGATGGAAACGAAAGAACGAGAGAAAGTGCTGGAGCTGATCATCTCCTACGAGCAAAAAGGGAAAAAAGAAGGGCTGGAAGAAGGGGTAAAACGCGGCCTTGCGCAAGGGATGAAACAAGGAATGGAACAAGGCATGAAACAGGGAATGAAGCGGCTTATTCAGACGATGGCACAAAAAGGGATGACGGCCGCCGAGATTGCCCAGTTGGTGGATCTTTCTGAAGAAGAGGTTCGAAGCTTGTTGAGCGAGTAAGAGGAAAAGGGTGATCGATCTCACCCTAGTGTTTCCTGTTGAATGAATATTGAGAATAGAGAAGAAGGCGGTCATCCACCGCCTTTTTGTTGGGTGAAAATCGCATCAGTGAGTTGTGATTTTTACGTCTGGATGGAGGCGATAAATTCCGCTCTT # Right flank : TACGTATCCAAAAAAGCCTGCAATCTCAAGGATCGCAGGCTTTTTTGCTTTTAAAAAAATACGAATGTGTCTATGCAATAGGGGGAACCATTTCCGTTTTTTAAAAAAGTGTCAGCTGTGTGGATGTCATTTTCTTTTCTTGGGCTGTTGGTTCCCCGAGAAGCAGTTGCATTTTTGCGTACTGCTTTTCCGTGAAAATCCCCACCACTGGGTGAGTGCTGTATACGCTCCTGATCCGTGCGGGTATACTGAAAATGGCCAAAGAAGGCAATAGGAAAGCAGAGGTGCCCGATTTTCGGACATCTCGTATGATCTGGCTGCCTGTTGGCTATACTAGATAAGTTGTGGTTGGCGGAACGACTCTTTGCGGGAGATCATGCAAAAGATGATCACCAACATTCGTCGAGCCGTGGCGATGAGGGCTTTTTTCTTCCCGCATCGGGCCGCCAACGACCAAAATTTTCGGGACAAGGGATGTGTCTTGGATCGAGCTGCTGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCCCTGAGATTATCGCTGTGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 3352129-3353019 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022557.1 Geobacillus subterraneus strain E55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3352129 30 100.0 36 .............................. CGCACATATTGCTCTCCACCGTTTTCATTGGCGTCC 3352195 30 100.0 35 .............................. CTTGAATGGTCATGCTGAAATCATAGCGCGTTGAA 3352260 30 100.0 38 .............................. TGATGCCATGGCGATGAAAACCGTATTGAGAAACATGC 3352328 30 100.0 37 .............................. CACGCATTTGAGAAAACGAGCATTCAAGCCCGACACA 3352395 30 100.0 37 .............................. TCCACACCGCCGATCAATCCGGCAACGGAAGCGTTTT 3352462 30 100.0 35 .............................. AACTGTGCTACTCCTCCATCGATACGAAGCCCTGC 3352527 30 100.0 36 .............................. GGCTATACCTAACCGAAATTCATCTCCCACTTTCAC 3352593 30 100.0 36 .............................. TGCCACGGTAAGATGGGGAGAACAAACAGCTGCGGT 3352659 30 100.0 37 .............................. CAGCTAGTGACGTTGGAGCAAGTCCGACAGGGCACAC 3352726 30 100.0 36 .............................. TGCTGTTCGCAGTATCGTCCTTGTGTTAGGTTTGGA 3352792 30 100.0 39 .............................. ATTTTCCGCTGCCGCTTTCCCCAGCAATCAGCAAATGCG 3352861 30 100.0 34 .............................. AAACTCGACCCTTCTAACACAACCTTGCTGGCGC 3352925 30 100.0 34 .............................. CGACCTCCTTGGCTGGACAAAGGAGCGGTTCAAC 3352989 30 93.3 0 .......................C....T. | C [3353012] ========== ====== ====== ====== ============================== ======================================= ================== 14 30 99.5 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAACACTGCTACAAGTCTTGATGTCTGCGATCACTATTCAACGCATGTGGAGTGCGTGGCGAAATTGCAATGGCGGATGTAAACGCCAAACAACTGATCTCGATTGAACGTCATTGTCCAAAAGAAGTGTCCGCCTCAAGAAATGGACAGTCTGACCGCCCGCTGAGCAGGCGAGCGAGGAAGGCCGTTAGCCATCATCAACGAATTGGGTCAGTGGTGGTGAGAATGAATACTTCGGAACAAAGGGAAGCAAAAAAAGCGGATGATGCACGCGCCCTAATCGCTTGAAGCCTCTTCTCCAAGCGAAGCGCAAATGGCCGATCCATTCGCTTGTCGTCGACCTCCAATTGTGTAAAAACCTCAGGGGGTCGACGACATTGATTTTGATCGCTTGTTCCCTACAGCCATGACAAATGAACTGGATTGACAGAATCTTCGAAACGTGTTATTCTGAGGATGGCGTTTAAGGAAAAGCTTGATATGACAACAATTTTTGGGG # Right flank : CCGTGATGAATTGAAATCGACTTTGATTTTGTTGTAATTTTTATGGATTGATAATCCATAAAACCCTTTTTATGCTTATGACCTATATCATCTCTATTTCCGAAAATGGAACAAATCTCTTTTTTTAGGTATACAAACCAAAAAAATAGACAAAAAAGCCCAGGGAGTGACGTTGGACATCAGCACTCGAACATTCGTTCGTTATCTTGCCTCTCTCCATTTCTGATAGACGTTCAGTAAGGGCTCGCTATAGCCACTCCTTCGCGTCAGTTTCATCCAGATCTGTCGTGATCGACGGACGAGTAGCCCTGCCATCGTGATCACCGTCTGAATGATCGTCTTGATGCGGCGGCGTTTCACTTTATGATGTAATGGATGTCTCGGATCGCTTAATAGATCTTGTCCAATCAGACGAAGAAGGTTGTACACGAATGCTCCCATGACTAACACGATCGCATTCGTTTTCATCTTCCCTGATGGAAGTCGCTCTAAATCTAAGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 6 3354672-3356148 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022557.1 Geobacillus subterraneus strain E55-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3354672 30 76.7 34 ......CA..G.TTC.G............. TTCCTCCTCAAAACAAAAAAGACGGGATTTCCCG G [3354677] 3354737 30 100.0 36 .............................. CACGACATAGACAACCCCGTCTTGTGCGTCCGGCAA 3354803 30 100.0 36 .............................. ATCAGTTTCATTGCCGATCCCCCTGCCTACTTTTCT 3354869 30 100.0 38 .............................. CCTTTTTCATAAATAGAATCCATTAAAGTTTTATCTGT 3354937 30 100.0 36 .............................. GACGCTCACGCGGCTGGATTTGAAGAAGTTCAACAA 3355003 30 100.0 37 .............................. AACAGATTCAACAAGCGGGCGGCAAAGTGAAAAAAGG 3355070 30 100.0 35 .............................. CTGTTACATATTGCACATTACTTCCTACAGATTGC 3355135 30 100.0 35 .............................. TTGGAAAACGGGACATTTCTTACGGTGGAACCGGA 3355200 30 100.0 35 .............................. CCAACATCGCATCGAACATTGGCGCTTTTCCTGTC 3355265 30 100.0 34 .............................. ATAACCAAACATCACCTTTTCCTAATTTAAGACC 3355329 30 100.0 37 .............................. TGCCTCGATTGCGCGGCCGCATTGGACGCGGAAAAGG 3355396 30 100.0 36 .............................. TTGTCCTTCCCTGCCTTTATATCCCTCTCATACTCA 3355462 30 100.0 35 .............................. CGCGCTTTTGTCACCATTTTGGTGACTACGGGGTA 3355527 30 100.0 35 .............................. GCGGAAGAGTTGTGGGAAGAATATGTCGGATGGGG 3355592 30 100.0 37 .............................. TCGTCATCAACAGTACAGCAGAGTGGACAAGCTCGGA 3355659 30 100.0 35 .............................. ATTGCATACATTTTTCTAGTTTGTCTATATGCTCT 3355724 30 100.0 38 .............................. ATTCCGAAGAGAACATCGGTTTCTCTTGACACTTATGA 3355792 30 100.0 36 .............................. TCTCGCATGTTTGGTCAAAACCCGCGGCCGGCCGAG 3355858 30 100.0 35 .............................. TCCCAGCGATAAGGTCAGCTTGTAAGCGGGCTTTT 3355923 30 100.0 35 .............................. ATAAAACGACGGGTGCAACAGTTGATGCGGGTTCG 3355988 30 100.0 35 .............................. TAAATAATAGCCATTTTATATCTCCTTTCTTTTTT 3356053 30 100.0 36 .............................. ACTTCCAGTATGTCCCCGCAACAAACCGAAGACTTT 3356119 30 83.3 0 ...................A.A..G..G.T | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 98.3 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CATGTCGTCTTCCCTTTGGTCCAACAAGGGGACAAGGTAGCGTGTTGTCGAACCAACAGACGCATCGATTCCTCCCAAATGATTGCTTCGGTCATCGGAAGACAAGCGAGCTGATCGAGTCGTTGTCGCAAGGTTGGAGAGGAAGGCACGTGCTGAATCCCCATCGATGCCGAAAAGATATCGTCCTGACGATACGCTTCGATATGATCGAAATCCGTTTTTCCTGTGGCAAGCAAGCCGATCATCGAGCGAATGACGTCGCTATGGGAAATGTGCACTTCTCGACGAACCGTTGGAAGCCGAAGTGCGTTTACCCGTTTATCCAGTTTCGTTCGATGGAGTAAGTAGCCAACGAGAGCAAGCCCAGCACTTGGGGTAATCGCTTCATCTGTCAATACAAACCGAATCGGGAAATCTTTCATCACATTCACCTACTTGATGAAGAGTCGTCAACGTCGTTTTCCCTTATCGTATCAACGGTTTGCGACCATTGTAAAGAT # Right flank : TAACAGTTGTCCATAGCACGCCCCTGTGTTGCTTCGACTGATCTCCCCCATTCAACCGCTTATGTTTTAATGGAAGATGAGAAAAGTAGCAACCTTTCTCACCTATAAGTTGCGATATAAGAGGCATTTTTCCTCTTGAGAAGGGGAGGGGCTGCCCCAACCGCCCTCCCTCTCAAGAGGCCACGGTACGAAGTGAGATAGTAGGCTTTTCAATTTTTGTTGACAGTTTTCATTCATCAAAATTCCCAACGGCGCTATATGCCAAGTGCAGTTGGGGGCGTGCGAGAAAGTGAGAAACCTAAAAGGCCGGTGGCAAACCGCTGTGTCGCACACCAATGAGCGGCATCTTCATTTAAAAAAAGAAAGATGATTCTGCAAAGTTTCTCTAATTGAGAAGTAGGTTGGAACAGCAGCGTTTTACCCTAAATCACCAGCGTCTTAAACCTCATGCTTCTAGTTTTTTCGTTTCTTCGTTATAGACATGGACATTCAATTCTTTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //