Array 1 879301-884706 **** Predicted by CRISPRDetect 2.4 *** >NC_013192.1 Leptotrichia buccalis C-1013-b, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 879301 29 100.0 35 ............................. TATTAGAAACCTTGTTTTTAATAACAGGATTTTTT 879365 29 100.0 36 ............................. CTCCCTACATCTTGTATTTTTAACACTCTTGTGCTA 879430 29 100.0 35 ............................. GCAAATGAAACTTTTAGTTGTGGATTGAAACATCC 879494 29 100.0 36 ............................. GGAATAAAAGAAAAATTGGAGGAATACTTAAACCAC 879559 29 100.0 35 ............................. GATGCTTTTAGTGCTTCTGCGAAAGTTTCAAAACT 879623 29 100.0 35 ............................. CAAGTATCTACCATCTGCATCTTTCCACAATTTCA 879687 29 100.0 36 ............................. AACACATTCAGGCACTCAATGACTATCTTAGCTGGC 879752 29 100.0 36 ............................. TCGTATATTATATGAGGATTATAATACTTGTCAGCT 879817 29 100.0 36 ............................. GCTTTTCAACCCATTTAATATCCGTTTTAATGTTGT 879882 29 100.0 36 ............................. CATCTTAAAGCTGTATTTAATACCACTGACAAGGAA 879947 29 100.0 36 ............................. CTCCTCTTTGCCAATGTTGTTTTTAATTTGCACTCG 880012 29 100.0 36 ............................. GATTAGTAAATACATAATGCAATAAGTCTAAATCAT 880077 29 100.0 36 ............................. AATCACTTTGTATGCTTGACTTAAACTTACTTCCAA 880142 29 100.0 36 ............................. TTGCGTCTTCGATATAATCGAGAACGATTCTTTCAA 880207 29 100.0 38 ............................. GCTTTCTTGATATTATTATACTATACTTTTTATCAAAA 880274 29 100.0 36 ............................. GCCTGTTAAGGACTTCAACAAGTTTTTCGTTTTGTG 880339 29 100.0 36 ............................. TTGTGAATATTTACTATTTGTTTCTCAACTTTAAAT 880404 29 100.0 35 ............................. TCCGCCGCCGGACCGTAAATAATCGTATTATTGCT 880468 29 100.0 37 ............................. AATTGTATTATATGGAATGTTGGGACTGGCTGGTAAA 880534 29 100.0 36 ............................. GTGTAAACGGAGATTACAACAACATTATTAGAAAAC 880599 29 100.0 36 ............................. ATAATACCATTAAAGGCTTTATTTTTGAGTTTAATT 880664 29 100.0 36 ............................. TTGTATTGTTTGTGTCAAATTCTCCTAGAAGTGTAC 880729 29 100.0 36 ............................. ACAGGTATGGCACGTTCGGTTAGGTCTAATTAAATC 880794 29 100.0 34 ............................. TTTTCTCTAATTCTTTAATTTTTGAATACAAACT 880857 29 100.0 36 ............................. TTCTTTATCTGAGCCTAAAATATCATCTAAAATTCT 880922 29 100.0 35 ............................. CAAAATTATTGGACTTTGGTAACTTTGATACAATT 880986 29 100.0 36 ............................. TATATTGCCTTGTACTTGCCTTTACATATTGGTATC 881051 29 100.0 36 ............................. TAAAAATTGATAAAACTTGTTAATTAATACTTATTT 881116 29 100.0 35 ............................. GTTTTTAATGGAAAAAATGCAATAGATATTATGGA 881180 29 100.0 36 ............................. TTATTCAACATCTCCTTATAGTTTTTATTAATTTTT 881245 29 100.0 35 ............................. TTAGTAAATACTTGTTGGGAAACAGAGAAATTATA 881309 29 100.0 36 ............................. GATGTAAAAGACGAAGAAGGGAATATTAATCTTAAA 881374 29 100.0 36 ............................. GAAAAAGGACTTAAAAGATTTCGAGCAAGAAGAAAA 881439 29 100.0 36 ............................. ACTTTTGAGGAAACTGCTGAACACATCTTGAAAGAT 881504 29 100.0 36 ............................. AGTTATATCGCCAAAAACCTTTTTCAGCCTTCTGTA 881569 29 100.0 36 ............................. CTTGTTGTGCTTTAAATTTAGTTAGTTTTGCCATCT 881634 29 100.0 36 ............................. GCTTACACATTTGCTCAAGGAATTAATGGACGTTGG 881699 29 100.0 35 ............................. TTCCCGCCCGCAGCCCTTCAGTTGTGCCAAGTGTG 881763 29 100.0 36 ............................. TCAACTCCCCTTATTTTCTACCAGTACCTTTAAAAA 881828 29 100.0 36 ............................. ATTCATTTATATAATCATATTCTTTTAATTTCTTTA 881893 29 100.0 36 ............................. ATACAAATTGTCTCTTTCCAAAAGTTATTAAATATT 881958 29 100.0 36 ............................. TTAAATCAATGATAAATTATTTTCATATCTGAACTT 882023 29 100.0 36 ............................. TAGTGTTAGAGGAATTAACACAATTAAAGATTAATT 882088 29 100.0 36 ............................. ATCAAAAAATAAGTATATTAATGATGATAATAATAT 882153 29 100.0 35 ............................. TTTTCACTTTCTCGTTGTTGCTGTTTACTAATGTT 882217 29 100.0 35 ............................. CGAATTCTTCCATATCTGAAAATTTGCCTTTTTTA 882281 29 100.0 36 ............................. TGCGGAATTGGCTTTTATTTAATTGAATGTTATTGT 882346 29 100.0 35 ............................. TTCAATACTATATTCTCTAATACTGGAATATCTTT 882410 29 100.0 37 ............................. AAAGGTTTCTAAAAACAATATCGGCGATTTCTGACAA 882476 29 100.0 35 ............................. ATACAAATAGAAGTAGTTGCTAACAATAACAATAA 882540 29 100.0 35 ............................. TTTCTTCCGCAAATTGCACAAGTTCTTGACTTTAA 882604 29 100.0 36 ............................. TGATATTAAGAGAAAAGATTTGGAAGATGCTTTATT 882669 29 100.0 35 ............................. ATTCACAATCATACACTCCATTAAACGTTGTAGTG 882733 29 100.0 35 ............................. GTTGCAGGACTGTTTATGGGAATTGCTGAAGCAAT 882797 29 100.0 35 ............................. ACAGTATCTTGTACTAATCTGTACTCTGAACTTTC 882861 29 100.0 36 ............................. TATGTTTACCGATTTCCCTTTTGACGCTTTTATAAG 882926 29 100.0 36 ............................. CAATTTCGTGCAGTAAGTCATCTTCTTTCTTTTCAT 882991 29 100.0 36 ............................. TCAAATTTTTGTTCTTTACGATGCAGATTGTTTTGT 883056 29 100.0 36 ............................. TGATATTAAGGAGGTGTAGATAATAATTGAGTAGTA 883121 29 100.0 36 ............................. ATAATGGTAATTGGGACTTTTGCGGGCGTGGCCTTG 883186 29 100.0 36 ............................. TTACTCAATCATATAATTTAAATGATAATATGTTTG 883251 29 100.0 36 ............................. AATTATGAAATATGGAAAGGGTATGTTTTTTCAAAA 883316 29 100.0 36 ............................. TTATCTTTGTATGTTTTTACATCACAATAAAAATAA 883381 29 100.0 36 ............................. ACAATCATCTGTAGGAGTGTGATTTATGGACATAAA 883446 29 100.0 36 ............................. AATTTTGATAGCTTTTCTTCTATTTTTGAAGCGGCT 883511 29 100.0 35 ............................. TAAAAATTTATTTCTTAAATAATTTCTTAATTCTG 883575 29 100.0 36 ............................. GTTGGGAGGACGAATAATGAGAGAAATAAAATTTAG 883640 29 100.0 37 ............................. TTTGTCTATAAGGAAAATATGGATATTTTTGAACTGG 883706 29 100.0 37 ............................. GTTACAGTTCCTCATATTCTTTCAGGTTTTCCAGTAT 883772 29 100.0 36 ............................. AATAACCGTATTCGTCAGTTTTAAGATTATGTTCAT 883837 29 100.0 37 ............................. CAATTCTGCTTTTTCTATCCAGTTCTGAACATACAGT 883903 29 100.0 36 ............................. TATAAACTGGCAATTGAAAAATCGTATTCGGGATGT 883968 29 100.0 35 ............................. TATCTTCCTTAGTTATTTGATAATACTTTTTCCAA 884032 29 100.0 36 ............................. CTTTGTGGTTGTTTTCAAAGATAAGTTCCTTTGCCT 884097 29 100.0 36 ............................. AGAAGATTTTATGTATGTAAGAAATGGTAAACAAGT 884162 29 100.0 36 ............................. GGAGAATTGAAGAGCCTTTAAAAATTCTGAAGGTAC 884227 29 100.0 35 ............................. TGTCTAGTGAGCGGAAGACGACCCTTGAAACGAAG 884291 29 100.0 36 ............................. CATCTTCGGTGAAAGCAAATTTTTCTTGTAACTGAC 884356 29 100.0 35 ............................. CGTCTAGTGTAGCAGTTCTTAGCCCACTGCGCAAG 884420 29 100.0 35 ............................. CCTTTTGAGTTATAATAATATCGCCAAATAAAATC 884484 29 100.0 35 ............................. TTTTTATCACATAATTCTAATGAATAATTATCAAA 884548 29 100.0 36 ............................. CAAAACAAGGAGCGATAGTTTCGACTATTTTTGGAG 884613 29 100.0 36 ............................. TTCTGTACATTTGCTATTTTATTCCAGCCCATAAAA 884678 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 84 29 100.0 36 GTTTTAATAGCACAAATTGTATTGTAAAT # Left flank : TTTTCAAATTTTACATTCTGAAAATAAACCGCCCATGTATAATTTTTCTGTTTTGCAGTTCCAAAGAAATCTTCAAAAATATCAAGATCACACTGTTTCAATCCTTTTTTTAAAATACGCAAAATCTTTGATCTCCAATTAACAGGAAAACTATTTCCTTTTATTAATTCAATATTAATTTTGAATCTCATGTCTTTTTTATACCTTTCTTTCTGTTATTTTTTTCTTTGAAATATAATATATTATATCCTATTTTCTATAAAAGTAAATACTCGTATAGTAAACTTTTACTACTATTCAATATTTTTAATCTGTCGATGCCTAATAACTAAAAAATCCCTGTATATCGACAGATTTTTAAAATCACTGATTTTTACTAATTTTCTTAAATATTTTTAGTTTAAAATAAAAAATCAACCTTTAAAATTTTGAAAAAAAATTAGGTATCGACAAAATTGATAAAAAATGATATGATATACAAGGAAGTTAATAATGATTTA # Right flank : TTGCATTTTACCCTTGACTATTGCGGGCACAATTTGTAAATTTTAAAATATTAATCAGTAAAATAGCTGTACTTTTGTTAATAAAGCATGGCTATTTTTAGTTTACAAATGCTTTTTCTTGTTTATTTTATTTGAAATTCTAAAAAAATAGGTTAAAATATAGCAATAAAAAGAATATTAAAATTTAAGTAAGGGAGAATGCGGATGAAAAAAAATGTAGCAGCATTTTTTGATATAGATGGAACAATTTATAGGGATTCTTTGCTGATTGAGCATTTTAAAATGCTTGTGCAGTATGAATATATTGATATGATGACTTGGGAAGGGAAAGTTAAGGAGAAATTTTCCAAGTGGGAAAATAGGACTGGGGATTATGATGATTATCTGGATGAACTTGTCCAGACTTATATGGAAGCATTAAAGAATTTTAGCAAAGAGGATATGGATTTTATTGCGAAAAGAGTAATGAAACTTAAAGGAGACAAAGTTTACCGATATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATAGCACAAATTGTATTGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1403635-1402998 **** Predicted by CRISPRDetect 2.4 *** >NC_013192.1 Leptotrichia buccalis C-1013-b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1403634 37 100.0 39 ..................................... TGTTTTTAGCCCTACTCCTTTCTTCACTAATGAAGAGTT 1403558 37 100.0 40 ..................................... CGTCCCCGAACAACCTACACTCCGACATGTTCGGAATAAC 1403481 37 100.0 39 ..................................... TTTATTAAATCAGAATATCTTTCTCCATTTACACCTTCG 1403405 37 100.0 39 ..................................... TTGCTTGTACTTATTCATTTTATTTTCTCCTTGAAAAAA 1403329 37 100.0 36 ..................................... GTTGATTTACACCTGTGTACACCTCTTTTCTCAATT 1403256 37 100.0 37 ..................................... AAATGAAGACAAGAAAGAAGAGGAGTCTAAATTAAAA 1403182 37 100.0 37 ..................................... ATATCTAATCCAATTAGAAGCTCATCAGGATCTTTTA 1403108 37 100.0 37 ..................................... AATAGTGGATTTTCCTGAGCCACTAGGTCCTACTAAA 1403034 37 86.5 0 ..........T.............T....T..A...A | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 98.5 38 GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Left flank : TTTTACAAATTCCTCTTCCTCAATCCATTTTTTCTTATTCACAATTTCATTCTGTATTAGCGGAACCATAGCATATCCTCCACCAAGAGTAAATGTACCTATCTTAAAAAAGATCCAAAACAATTCTAAATATACTTTCATTTTACTACCTTCCTGCTATTTCATCTCATTTTTCATTTTATCATAGATACTATAAAAAAACAACAAACTTGTCTTTTACGGCTTAAAATATTCATACATTTATCATTATAATTTAAAAAAAATTTTGAAAAATTAAAAAAATGTGGTACAATAAGTTCGTAGTAAAAATTCCTACCACTACTAAAAATTAAAAAAGCAGAGAAAAATCCATTTAAAGCCAATAAAAATGCACGTTAGGAGTTACGGAAAATGCCAAAAAAACAGCAAAAAATGATAAAAATCAAGCAAAAAAATACGATTTTAATGTCTGAAAAAAATTCTATAACACCGATAAATAAAGGGTTTTCTCAAAAGTACGG # Right flank : ACAACAACTTTTGTATAAGGTTGTTTTTTTTGTTATAAAAAAAATAGGGGGTTGAAAAAAAAGCGAAAATGTGTTATTATAGTTACAGAAAATAATTTTAGGTAGAGAGTGGGTTAGCCCACTCTTTAGTTTTAGATATGAGGTGTAATTTTATGGAGCAGATTTTAAATGAGTTTGAAAAGAGAATCGAATTGCATTTAAAAGAGATGAAGCTGGAATTGGCGGATTTGGAATATGTCAGGGATGGCGGGTATAATTATTTGAGAGTGTATGTGGAAAAGGAAGATGGAAGTACGACTACACTTGATGATTGTATTGATTTTAGTCGTGAGATTGACGGGGTTGCTGATGACCTGATAGATGAGAAGTTTTTTTTGGAGGTTTCTACTCCAGGGGTTGAGCGTAGATTGAAGAAGCCTAAAGATTTTTTGAGATTCTTGGGGGAGAAAATCAATGTTCAGGCAAAAAGCAATATTGATGGGGCAAAGAAATTTTTAGGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 3 1617773-1616840 **** Predicted by CRISPRDetect 2.4 *** >NC_013192.1 Leptotrichia buccalis C-1013-b, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1617772 37 94.6 37 ...................................TT TCAGGATCTAATTCTATACCGTCTACTTGTAATGTGT 1617698 37 100.0 38 ..................................... AAAGCATAAACCTAAATTTTATTTTGTAGACCAATTGT 1617623 37 100.0 37 ..................................... AAAGAATGATACGGTATTATAAAGGACATCTTGTTTA 1617549 37 100.0 36 ..................................... CCATCCAAAATTTTCCAACTTCTGGTATGTCTTCTA 1617476 37 100.0 38 ..................................... TTAATCTTTTGATGTCTCGATCATTTTTTATGTCATTT 1617401 37 100.0 39 ..................................... ATACGGTAAGTGATGTTAATACAGCAAAAGTTAAATCAG 1617325 37 100.0 35 ..................................... ATACTTGTTGTTGTCCATATCCTTGTACCACTGGT 1617253 37 100.0 40 ..................................... AAGTCTTTCTCATCTCACCTTTCTTATCTGAAGTATAATA 1617176 37 100.0 38 ..................................... TCGTATCTGTAGTAAACTTTGTCGTGAAAATGGAATTC 1617101 37 100.0 38 ..................................... TTCAAAAGTTCTTTTACATAACATAAAATTCTCAAATC 1617026 37 100.0 37 ..................................... AGATGTGAGATGGAAACAAATGTATAATGGTAGACAA 1616952 37 100.0 39 ..................................... CACATTCAGCAGCGTTCCATTCAGTCCATCCTGTTAAAA 1616876 37 94.6 0 ...............................AA.... | ========== ====== ====== ====== ===================================== ======================================== ================== 13 37 99.2 38 GTTAAAGTAGAGTATCCATTAAAACAAGGATTGAAAC # Left flank : AATCATAATATGGAAGAAGTATTAGTAATTGTTGTTATGATTGCGGGAGGATTAACTGGATTTTTGATGGTAAAATTTATTCAGAAAAAATTAAAGGCTAAAAATGAAAAGAAATAAAAATTGAAAGTGTGATACTAAATTTTATTTAAAAACTAAAATATTTTTAATAACAAGGGGCTTGTCCCCTTGTTTAAAATTCACAACAAATTGACTACTCAACTGATAGACAATAGAAGTTATTTATATAAAAATTCAAAAAGATTTTGAAAAATCAGAAAAATATGGTAAAATAAGACTGTAGAAAAAATTCCTACCACTATAAGAAATGAAAAATGAGAAGCAAAATCCACTCAAAGTCAATAAAAATGAGCATTAGGAGTTACGGAAAATGCTAAAAAAACAGCAAAAAATAATAAAAATTAAGCAAAAAAATGTGATTTTAATGTCTGAAAAAATCGCTGTAACACTAATAAATAAAGGATTTTCTCAAAAAGACGGGT # Right flank : AACTTTTTTATAAGGTTGTTTTTTATTTATTGTCAAATATGAGAATAAAAAGCAAAAAAAAATAGAGAGTCAATACAAATTTTGTATATTCTCTCTATTTTATTTATCATAAATTGTATAATCTCAAAAAAATTTCACAAATTATCTTGAGTAAACTTTTGTTAATTTAGCAATTCTTTCTGCTAATTCATCTGTCAACACACCATCTTTTAATCTCCATTGCCAGTTTCCGCTAGCAAGTCCAGGAGTATTGATTCTAGCTTCGCTTCCTAATCCTAAGAAATCTTGAATTGGAGCGATTGCCATGTTTGCAACAGAGCTCCATGCACCTCTTATCGCATCCCAATGGATTTCATTATCAGATCTTGAATTTAAATAGTTTCTTGCAAATTGTTTATCGTCTTCATTGGCTTTTGTAAACCATCCAATTAATGTGTCGTTATCATGAGTTCCTGTATAAACTACGCAATTTTTGGTATAAGTATGAGGCAAGTAGTCAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAAGTAGAGTATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 4 2217586-2217762 **** Predicted by CRISPRDetect 2.4 *** >NC_013192.1 Leptotrichia buccalis C-1013-b, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 2217586 31 100.0 43 ............................... ACATCTTGAGATCAAACCCTCCATAAATAAAAATTTATAGTTA 2217660 31 96.8 41 ....................T.......... ACTAATTGGATGAGCTCTAAACTCATCTGTTTGGTTTGGTT 2217732 31 90.3 0 ..A............C............A.. | ========== ====== ====== ====== =============================== =========================================== ================== 3 31 95.7 42 AAGTAGAGTATCCATTAAAACAAGGATTGAA # Left flank : TGGTGCAGTAACTTTTTATAAAAAAAGATAGTTATTTAATAATTATAAATAAAAAAATGGAGGAAAAGATTATGAAATTTGATGATTTAAAAAAAGGTGCAGAAGATGCATTGAAAAAAACTGTAGATGGAGCAAAAGACTTGGCTGACAAAGCTGCTGACAAAACAAAGGAAATTGCAGGAAGCGAAGTTGCTCAAAATATAAAAAAAGGAACTGAAGAAGTTTTTGAAAAAACAGTAGAAGGAGCAAAAGATTTAGCTAATAAAGCAGCAAACAACAAAATTGTTAAAGATGTGGAAAAAGGTGCTGAAAAAGCAGTAGATAAAACTGTAGAAGGAGCAAAGGACTTAGCTGGTAAAGTTACTGGAATGTTTAAAAAATAGTAAAAACAAAAATGTACTAAAAAGAAATTATTTGGAGTATCAGTTTTGGTACTCCATTTTTTAAAAAAAATTTTGAAAAATCAAAAAAATGTGGTAAAATAATTTTGTGGTAAGTTA # Right flank : ACTATTCGTTAAAAACAACAACTTTTATATAAGGTTGTTTTTTTTGTTTGTAAATAAAATAAGTTATACTATTCCCCGTTTAAATAGCGAATGTTTAATAAATTTTGAATTACATACTATTTAGTAAGGAATTAAAACTTTTGTCCTTAATATAGTTTCTATTTTATAAGGGATTTAGTATTAGATTATTTTATTTACTATCGGTTTTTACTATTTTTATTAGTTTTTTTTCGCAGGATTGCTCATTGCCGCAAATCCTGCACCTATGGCTAGACTACGACTTTTATTTGCCCAACTCCGAAACTCCTCCTTGCAGTCGTCAAACAGTCGTAGTTAAACAAATAAAAGCTCCGTCGGTTTATTAAAACAAAAAAAATTATATTTTAATTATTTTGAAATACTAAGTTTTTATCCTTTGTTGGAAAAGTTTATAATAAATTCGTTATTTAAATGGGGTTTAGTATTAAATATTTTACTCTATCAAATTTTTAAAATATTTT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTAGAGTATCCATTAAAACAAGGATTGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //