Array 1 50532-52265 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQZT01000004.1 Hoeflea olei strain JC234 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 50532 31 100.0 36 ............................... CCGGTTGGGTGGGGATACCACCTACTGCACCCTGAC 50599 31 100.0 36 ............................... GCGTCGCTCAATGTCGGCTTTGCCGAGCGGCAGCCG 50666 31 100.0 34 ............................... TGGCTCGACATTTTGATCGTTGATCCCGGCCTTC 50731 31 100.0 34 ............................... TTCGCCACTGTGCGTTGATCTGGGCGCTGATCGG 50796 31 100.0 34 ............................... CGCACCTGGGGGCCGCTCGACAATGAGGGCAAAG 50861 31 100.0 34 ............................... CACCCTGGCCCGCGCCTCCTCCTTGACGCGGAGC 50926 31 100.0 34 ............................... ATCAGCGCATGCACCTTGGCCACGCCCACCACAT 50991 31 100.0 34 ............................... AATCATCAGCAAACGAGCTGATCCGGGCGCCTCG 51056 31 100.0 34 ............................... GCCTCGCTCGCTGGCGGCTTTCCAGTCGAGCACC 51121 31 100.0 36 ............................... TACGATCATGCGGGCACCGCAGCCCGCATCAAGGTC 51188 31 100.0 34 ............................... CCGCGGCCGCTGCCCGAGGATATCGGGATCAAGG 51253 31 100.0 36 ............................... ATGGCGCGCATTGAGAGCGGCGGGGTCGATCGTGAT 51320 31 100.0 36 ............................... CGAAAGCGGATCGCCCGGCATGTTTGACCCGTAGTG 51387 31 100.0 34 ............................... CTCGCGAATCCACGCCTCAAGCCGCCGGGCCTCG 51452 31 100.0 33 ............................... GACTGGATACCCTCGGGCGATCCCGATGAGGTC 51516 31 100.0 35 ............................... ACCCTGGACGCGCTCAAGCGCGCCAAGGCCATGCT 51582 31 100.0 35 ............................... AACGGCGTGGTCAGCATCGATAAGCCCCTGAACAT 51648 31 100.0 34 ............................... CTGCCTGGGCGGTAGATCGCATCGGATTTCTTGA 51713 31 100.0 34 ............................... GATATCTCCAATATCGTGCTGCAGGATCTGCGCG 51778 31 100.0 35 ............................... AGGCCGACATCACCCGACACCAAAAGCGGAAAAAT 51844 31 100.0 35 ............................... CCTGCCCATGACGCGACCTCCAAAACCGGAAGACA 51910 31 100.0 31 ............................... CCCCTCGATCTCATCGACGGCGACCTTGACG 51972 31 100.0 36 ............................... AGGTAGTAACCGCCGCCCAGGGAATATTTTTCGCGG 52039 31 100.0 35 ............................... GAAGACGCCTTGAAAAAAGCCGCGCCGTCATCCGC 52105 31 96.8 34 .C............................. GCGAAAGAGCGGCTAGGAGCCTCCTCAGTTGGAC 52170 31 100.0 34 ............................... GCCCCGGTCACGGTCCGCAGCGGCTCGCTCGCGC 52235 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 27 31 99.9 35 GTCGCTCCCTCACGGGAGCGTGGATCGAAAC # Left flank : TGGCAGTCCGCCCGCCCCCGGCTCCGGCCTGCGCGAACCCCGCTGCAGCGCGATTTGATGGGGGGCGAAGCCGATTTTGGCTTGCGGAACGGTCCCGAACCCCCTAAATCAGGCGCCACCGATCTGGGGGCGATTAGCTCAGTTGGTAGAGCGCCTCGTTTACACCGAGGATGTCGGGAGTTCGAGTCTCTCATCGCCCACCATTCCTGTCCCCCGAAATCTTCACATGGACTGAGTGAGTCCTTTTCGGGCTTTGGCGGTGTCGCGCCGATATCCGGCGCAGCCGATACTCCGGCTCGCACCCCGGGAATCAGGCGGAACCGGTGCGAACCGCAAGCGTGCCGCCAGATCCCGACAGGTTCGCACCCGCCTGAACGCTTTGAGATCGCATGCAATCCCGCAAAACCGGATCAGCATCCGGCCAAAAAACCTGCCAGCACGCACGGGACCGCGCCATCGCAGCGGTTCTCTCCTTCTCCACAATGGGTTAGAAGACGACA # Right flank : CGTCTCCGCCGGAACGCTGGTGGCGCGCAGGATGAAAGCCTGCGGAGGCCGGGGCGGCCGGCGTGTGCGCCTTGGACGGGAGCGGTCCGATGCGGGGCCGGCCCCTTGATCCGCTCAGGCGCCCGGACGGAGGCAAGTCCGAAGGAAGGGCTGCGGCCTTTGCCGGAGGCGCGCGGGACGGGGTTTCGCGGCTTCAGCGATCCCGCCTGCCAGCCATGCTCCTATCCGCCTGCGAGGCGCGCTCCTAAAGGCCGGACGCGTTGCCGGGCCGCTTTCGGGCCTCGGCCACATCCTCCCGCGGCACTGCGCTTTTGACATTGTCGCGCTTGTCGCGGCGGGTGCGATAGAGCGAGAACAGCATGAAGCCCACCGCCATGGCGAAAGTGACGAGGGCGAGGACGATGATCAGGTTCACGTCGGGCATGAAAATCTCCTTGTAACCGGTGCGTGCAATCAAACGCCGGCCACGCCCGATGGTTCCGCCACCGGTCACTGGAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTCACGGGGACGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24847-27048 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQZT01000007.1 Hoeflea olei strain JC234 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 24847 31 100.0 35 ............................... CGCGCAGGCGTCCTCGGGACTGATATCCTGCAGCC 24913 31 100.0 33 ............................... ATCTCGGCGCACTCAGCCAAGCTCGGCCCGCAA 24977 31 100.0 35 ............................... GCCGGCATCGCCACCAATGTCATGCCCGGCGAGCG 25043 31 100.0 35 ............................... CTTGATCGGCACGGTAGAAGCCGCGATCAGCGAGA 25109 31 100.0 34 ............................... ACAAGGATATCAACGGGTCCGCAAGGCGTCTTTA 25174 31 100.0 34 ............................... GGCCGCGACCAGGTGGCGGCGCGCATCCACGATC 25239 31 100.0 35 ............................... CGCGCGCAGGCTCTTGATGTCGAGGATCGCGCCGT 25305 31 100.0 35 ............................... GCACTGCTCTCGGGCGGCGCACCGGTGCTCTATGT 25371 31 100.0 33 ............................... CCCAAAAAGCTGCCCGGCGTGCGCGCCTGGTCG 25435 31 100.0 34 ............................... GCCCACTGCAGGGGCCGGTTTGGCGCGATCTTCC 25500 31 100.0 36 ............................... TCCTACAACAGCAACGATGATGCATTTGCCGACATC 25567 31 100.0 35 ............................... AAAGTTCCAGCTGTCATCGATGTACAGATTGTAGG 25633 31 100.0 41 ............................... TCCCCGCGACGACAAGGGCAAGTGCCTAAACATCACCTGGA 25705 31 100.0 36 ............................... TACAAGCAGCGACCCCGGCCCCGGAATGAGGCCACC 25772 31 100.0 35 ............................... CCGGGCAAGCTGACATCGACAACCGGACGAAAGCC 25838 31 100.0 34 ............................... CGACCTGGCCTGGCAAGAAACCGACGACGGCGAC 25903 31 100.0 33 ............................... GATATCATGTTCTACTCGAGCCGATATTTCGAC 25967 31 100.0 35 ............................... CGGACGCGACCAACCAGGGCAGCCCCAAGGGCTAC 26033 31 100.0 34 ............................... CTGTGTGCCGAATTCGGCATGGATGGCGAGCTGC 26098 31 100.0 35 ............................... GCCCGGGTGCACCGCAAACCTGTCCTTGCCGCCAC 26164 31 100.0 35 ............................... CTGGCCGTGGCGCCAGGCGACCGACAGCATGGCCC 26230 31 100.0 35 ............................... AAGGTCGCGCGCCAAGGGCATAACGTCGACACTGC 26296 31 100.0 35 ............................... CAGCCGTGGCCAGATGTGATGATGCCGCGCTCTTG 26362 31 100.0 34 ............................... GGCTATCGCTGGCCGCGATCGATGACGAGTGGCT 26427 31 100.0 35 ............................... CTTGCCGCACCGGCGGCAATTGGCCTTGTCGGTCA 26493 31 100.0 34 ............................... CGCTGGGCAACCAATCCGCCGCGCAGGCCTGCCC 26558 31 100.0 37 ............................... AGCGATTTCGCCAGCGCCTTGAGTCCGCGGTACAGGG 26626 31 100.0 34 ............................... GCTCAAAACCTCGCGGGGCGCTGATATGTGGGAC 26691 31 100.0 35 ............................... TGGTACCAGATCAATGCGTTGTAGCGGCTGTTCAA 26757 31 100.0 35 ............................... CTCTTCGAGCCGCTCTATGCGCTCGACCAGCGATC 26823 31 100.0 34 ............................... ATGTCGCCATCCCTCCCGAAATCACGTCGGCCCA 26888 31 100.0 34 ............................... GCCGGAGGTGACCGGCTGCCCGGCGTCGCCGGTG 26953 31 96.8 34 .......................G....... AGCCCGAAGCCGCAGGAGGGGCTCCAGCGCAGGT 27018 30 74.2 0 ........C...........C..-C..GGCG | C [27030] ========== ====== ====== ====== =============================== ========================================= ================== 34 31 99.1 35 GTCGCCCCTTCACGGGGGCGTGGATCGAAAC # Left flank : CGCCCGCTGCCGCCTTTCCGGCCAAGTGCCCGCCGGAGCGGCGGATCAGCCCCCTTCTAGACTGGGGACTTCGCAGGCCGCAAGGGGAGAGCGGCCGCAGCCTCCCCATGCCGCAGGACGGGCGGGGAGCACAGGCCGCTCGCCTGCTGCGCGGATGAATGTGAACGCCGGGCGGATCCGCCAAAGAGCAGGCCCCCCGGAAGCAGAAGTTCGCGCCGGCAGGCCCCCCGCCTCCCTGGCTGCGTCCTGAACGACCGCGCCCGCGCCGTGCCCGCGCCCGAGCGCACGCCCGAGCCAGCCCCCCGGGGACCCGCTACAGCGGTGCGAACCGCAAGCGTGCGGCAAAACCCCGGCAGGTTCGCACCCGCCCCAAGCACCTGAAACGGCGACAGCTCCTGCTCAAGCCCGGCACCACCCCGAGGCTGCGGCATCCCTTTTCGGCACGGATCGCGCCTGCTCCCCCGTTTCACTCGCCCCCGCAATGGGTTAGAACAACCGCA # Right flank : GGGCTTTGGCTGGCGTTAGCGGTCGGCCTTCTTGCCGCCCGGTTGTTTCAGGCGCACGCGCAGGGTCTTGCCATCGGTCTGATCGAGCTCGAAGGCGCCGGTCTTGCGGACCAGATCGCTCAGCTTGCGAAAGCCGAAGGTGCGGGGGTCGAAATCCGATGACAGATTGGCGAGCTGCGTGCCGAGCGCGCCGAGAGGCACCCAGCCGTCCTCGCTGTCCATCTGCAGGATCACCTTTCTGAGCACGGGCGTCGCCGCACTTGGCGGCTGCAATGATGTGGCAGCGTCCGCGGCGCCGCCACGATCGGCATCGAGGTCGGGCAGCAGGTTTTCCGTGTAGGTGAAGCGGCGGCAGGCCTGGCGGAAACTCTCGGGCGTCTTCTGCTCGCCGAAGCCGAACACATCGACGCCCTGCTCGCGGATCCGGGAGGCGAGCCGGGTGAAGTCGCTGTCGGAGGAGACCAGGCAGAAGCCATCGAAGCGGCCGCTGTGCAGCAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 91418-92556 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQZT01000007.1 Hoeflea olei strain JC234 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =============================================================================================== ================== 91418 31 100.0 33 ............................... CAGTGGGAAACGAGCAGCAGGATCGCAGCCTTG 91482 31 100.0 36 ............................... TCCCACAGGTCCCGCCAGTGACTGGTTCCGGCGCCG 91549 31 100.0 35 ............................... GAGAACGTGCCGCGGATTATGACGCGGGGCCGTGG 91615 31 100.0 36 ............................... TTCCGCCGGCACGGGCTCGCCCATGTAGCGCTTGGC 91682 31 100.0 35 ............................... CTTTCAATGCCGCGCACAATTGCGCTAAAGCGGCT 91748 31 100.0 34 ............................... CGCGGCAGGAGAATGGTCCTGGCCGGTGGCGCTG 91813 31 96.8 35 ................A.............. GCCAATAGCCGCGATGATCAGACGGGAATCCGTGC 91879 31 100.0 34 ............................... CGGCAATGGCCGATTTCACGTCGCGGATTGTCGC 91944 31 100.0 34 ............................... GGGTGCGCTCATGCCGCGTCCTCCCCGGCCGGGG 92009 31 100.0 35 ............................... GACCCGGCAGTCTGCGGCGTGTGCGCATGCGCCGC 92075 31 100.0 34 ............................... ACCAAAGTTGCCGAGTGCGACTATAACCCCCGAG 92140 31 100.0 34 ............................... AGCGCCACGGCCGCCGCCGTGCAGCGCCGGGCGC 92205 31 100.0 34 ............................... TTTGACAACATGAACCGGGCCAATGGTGGCGGTG 92270 31 100.0 34 ............................... CTGGTCCTTTCCGGATGGCGGCAGCCATGATGTG 92335 31 100.0 35 ............................... GGCGTGCTGGCCGACGTGGTCACGCCGCCGCCACC 92401 31 100.0 95 ............................... TTGAGTTGTGGCGACAAATCGCCGACGATGGGGGAGCCGCCCATGGAGCGTGGATCGAAACTTTCAAAAGAACAACAAGAAGCGATTTTCAAACG 92527 30 87.1 0 ...........G.-............AC... | ========== ====== ====== ====== =============================== =============================================================================================== ================== 17 31 99.1 38 GTCGCCCCTTCACGGGGGCGTGGATCGAAAC # Left flank : CCGCCATGCTCGTGCTCGTCACCTATGATGTCCGGACCTCCGAGCAAGACGGCGCGCGACGCTTGCGTATGGTGGCCAAGGCCTGCCGCGACTATGGCCAGCGGGTGCAGTATTCCGTTTTCGAGATCGAGGTCGACCCTGCGCAATGGACGCGGCTGAAGGCCCGCCTGGAAGCCATCATCAAGCCCGAATTCGACAGCCTGCGCTATTACTATCTCGGCGCCAACTGGCAGCGGAAGGTCGAACATGTCGGTGCCAAACCGGCAACCGACCTTGGCGGCGTGCTGATCGTCTGACGGTCCAAAGGGTATCAGATTAAGCGGTGCGAACCTGAAGCGTGCCGCATAGCACCGGCATGTTCGCACCGGACCCAGCTCTTTGAAATCGTGAAGCTTCCCGGATTGTCCCGGCTCCCTCCGCGCGGTTCCCGAGCCGCAGCGACCGGCTTCGCGACCACGATCCCATTCCGTCCGCTCGCGCAATGGGTTAAACACCCCGGA # Right flank : CAGCAGGCATCGAGATCAAGGCCGGTTTGGGGCCGGGTCGCGCAGGTGTTGCGAACCGGCAGCGCACGGCGGCACGAGACCCGCAGGATGAGGCGAGGTTCTTGCAAGAACGGCGTGCGCTCGGATCGGCCTTGCTTGCGTTATGCCCCGATCGGCTTGATCTCCGGTTGCGCCACCGTCAGACAGACCGAAAAGCGTCTGGCACACCGAAATGATGGCTGTCTCCGGGTGCGGTTTGGCCTCAGCGCACACATCATTTGCCGCTCACGCTGACAGATCCGGAACCACCTTGCCGATCAATTTGTTCGATTCGACCATGTCATGCGCAGCGGCGACTTCGGCCAAGGGAAAGACGCACGAGACCTCCGGTGCGATCGTTTTGGCATCGAGCAACGGCCAGACCCGTTCAAGCAGCTCCCGGGCGATCCGGCCCTTTTCCTCGACCGAGCGCGTGCAGCGTCGAACCGGTCACGATCGCCCGCTTGCGCATCATTTGCGAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTTCACGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //