Array 1 3067-1515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAC01000145.1 Fusobacterium necrophorum BL contig0145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3066 30 100.0 35 .............................. ATTGTATTTGCAAAAGAAAAGCTGGAAATTATAAA 3001 30 100.0 35 .............................. GAATCGTCCAATCCCTCTACTTGAATAATGCCTCG 2936 30 100.0 36 .............................. TTCATAGCTTTAGCATTAGCTATAGAAGATGTATTT 2870 30 100.0 37 .............................. ACTTTTAATTTCTTAGGAAGCCCCTATGAAATACGAA 2803 30 100.0 36 .............................. TTAATAATTCTAAATTTTCAAAAACATTCCCAAGTA 2737 30 100.0 35 .............................. ATAATTCCTAATCTTTTTGCTTCTTCTCTTAATTC 2672 30 100.0 37 .............................. TAGACCTGTTAAAAAGTCTAAGAACATTAAGCATAGC 2605 30 100.0 37 .............................. TTGTATGGGAACAAAAACGCAACAATGGAAATTGTCA 2538 30 100.0 37 .............................. TAATCGGAGTATCCTAATAATCTTTTATTTTCATCAA 2471 30 100.0 35 .............................. TTACATTATCAGAAATTTTAGAGTGCGTTGCCTGA 2406 30 100.0 35 .............................. ATAAATTTTAAAAACCAGTTAGCTTTTTCCAAAAT 2341 30 100.0 35 .............................. CAGCACTCTTGGAACACTGGCTAAGTCTGTTATAA 2276 30 100.0 37 .............................. ATTTACACAAGAAGCTGAACAAAAAGCTCTTGTATTT 2209 30 100.0 36 .............................. CCAAAATCTTGTCATTGTAGTATCCTGCTCCTTTTA 2143 30 100.0 37 .............................. TAACTTATGCTGCCATTCCTATTTTTAGAGCGATATC 2076 30 100.0 36 .............................. ATTTCTGCTAGATTTTCAACTATGCTAATTCCTTCT 2010 30 100.0 35 .............................. GAGAATAGATAAATATCAAAGTTACTACAGAAAAA 1945 30 100.0 38 .............................. AGTGGGAGAACGCGGAACGGGAAAAACCAGTGTTGCTA 1877 30 100.0 36 .............................. ATATATACACCATTTGCATAGATTTTCATCTGCATA 1811 30 100.0 36 .............................. AAATTCAATTCAAAGAAGATAAAATTGAGGGATTAG 1745 30 100.0 36 .............................. GCGGTAGGGGGGAAAGACAAAGAAACAGATACGGAG 1679 30 100.0 38 .............................. TTGTTTGTTTTAGGAAGTTTTTACTATTTGCAGAAATT 1611 30 100.0 37 .............................. AGTATCGTTCAATGGATTTTGGGAGTTTGCGGAACAA 1544 30 90.0 0 ...............G......G..C.... | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.6 36 ATTAGAGTATTACTAAAGTAGAATGTAAAT # Left flank : TTCCAAATGTGGTGGTGATAAAATATGTATGTAGTAGTTGTATATGATATCTCTTTAGATGAGAAAGGGACTTATCATTGGAAAAAAATTTTTCAAATTTGCAAACGATATTTGCATCATATTCAAAACTCTGTGTTTGAAGGAGAACTATCGGAAGTGGATATTGAGAGATTAAAATATGAAGTATCTAATTATATTAGAGATAATCTAGATTCTTTTATTATTTTTAAATCTCGGAATGAGAGATGGATGGAAAAAGAAATGTTAGGAATACAAGAAGACAAAACAGATAATTTTCTGTAGATATTTTCATTGTCGACCTCTCATAAGGTAAAAATCTCAGGACATTGACAAAAGAATAAAAGAACTTGATTTTCCAAGAAAAAAAGTAAAGATAGAAAAATAAAAAAGGGTTTTCTTTTAATTTTTTTTATAAAATAACTTTATCGACAATTATAGTCAAAAAAAGTTATAGATAGCAATGTATTTTAAAGTCTCGT # Right flank : GTTAAAAATTCTTAGATGAAGAAATCAGGAAAAATGAATGATTTATTGAGATAAATGTAATATAATCTCTTAAAAAATAAATTCATGTATAAAATTTCAAAAAAGTATATTTTTATGAATTATCGTGATATAATTGAAATAAAAATTGGAGAAGAGAAAGGAGGTTTTTGTGAATACGAAAGAAGATTTTAATAAAAGCAGAGCAGCTCAAGAATTGTGGTTAAGTAAAAAAAATTGGAAAGAAAAAATAGAACATATAAAAATTCCTAGTTATTTAAAAGATGACTTAGAAGAATATTTCAAATATATAAAAGAAGGGAATAATATTATGTATTCAGCAGTAATCGATAATGTGATTGCAAGTATAAATGTTGCAGAACAAGAAAAGGATTTGACTTCTGAAGAAGCTAAATATATTAGAAAAATATTATAGGAGTATATTATGATTCAATTTAATGAATGCGAGAAAAACTTATTTCGAGGATATGATGGAGCAAATG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAGTATTACTAAAGTAGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1194-2739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAC01000154.1 Fusobacterium necrophorum BL contig0154, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1194 30 100.0 36 .............................. TATAAAATAGGGAGATAGTAATGAAATGGTTAGTAA 1260 30 100.0 38 .............................. TTTTATTCCTCCTTCATTGTCGATATTAATATGTATTA 1328 30 100.0 35 .............................. CTCTTCTTTAAAGAGGTTTAAAGCTTTTTTCACTT 1393 30 100.0 36 .............................. ATTCTTTCTCGTCCTTTTAAAATCAGAATATTTCTT 1459 30 100.0 37 .............................. CATACTCATCTCCGGATACTTTTTTTCCAAATATTAG 1526 30 100.0 35 .............................. TATACTGCGAAAGGATCCAAAAATCCGGGAAAAAA 1591 30 100.0 35 .............................. ACCAAAAGGATAAATTCCTTTAAGCTACAAAACGA 1656 30 100.0 37 .............................. ATTTAAAAAGAAAAAGGGAGAGCCTAATGCAGACTTT 1723 30 100.0 38 .............................. TTACAGTAAAGAGCGCAACAAATAAAAATATCTCTATC 1791 30 100.0 34 .............................. ATTTACAAGACTATGAAAATCAAGCTGCATTACA 1855 30 100.0 37 .............................. ACAAGGGAATATTACAAAAGCTCAAGATATTAAAGGA 1922 30 100.0 36 .............................. ATTTTACATGAAGAATGACACCATTTATTAAATTAA 1988 30 100.0 35 .............................. AAAAATCCTTTGAAATTTAAGGAGGTAAGATGAAA 2053 30 100.0 35 .............................. AAAAATCCTATCGCTTTTTATCATTTAGGAAATAC 2118 30 100.0 36 .............................. AAAACATTTGAAGATATTTTAGAATTACAAAAAATA 2184 30 100.0 35 .............................. GGAGCATTTGAATGATGATCCTGAAAGCAAAATCT 2249 30 100.0 37 .............................. TAAATTCAACAGCTTGTTTTTTATCAGCTTCATCATC 2316 30 100.0 36 .............................. AAACATAAGTCAATAACTTTTATAACTGTAGTTTTT 2382 30 100.0 37 .............................. GAAAACAATCCTAAAAAAATTACTTTGGAAGATTTTA 2449 30 100.0 36 .............................. AGGAGCGAATACAGAAGGGGGAGACTGCTACATTTT 2515 30 100.0 35 .............................. ACGGTTCAAAATAGAAAGGAATCTATACAAAATTT 2580 30 100.0 35 .............................. GTTTTCTGCTAGATACATATTGTATCTAGTTGCTC 2645 30 100.0 35 .............................. ACCAGTCAGGCTAATGTACTGGCCAAGCCATTCCA 2710 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 100.0 36 CTTATAATAGAAACAGAGTGAAATGTAAAT # Left flank : CAAGTGCAATTGATTTTACATATCAGACCGGAAACGGTAGGGGAGAAGAAAGTATTTCAAAAGAGGAAAAAATTCGTCAGCATGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTACCTTACTTAAAGGAGTGAAAATAGAGAAAAAGATAACAATAAATTCTTATCAAAAAATAAAGGAGTTTCATTTGTAATAGGCTTTGTATGCATCTAGAAATGTTTTAAGTTATCACCAAAAGAAAAACATTAAAAACATTTTTAAGAGTTAAGGATAAAAAAGTATATTGAAATGAAATAATATGAGGGTATTTTTTTGCTTGTCGACCCCCAATAATGTAAATTTCCTAAGAGGTCGACAAACTACTTCTAATAAAGGACTAGAGATGATTTTTGACATTTTTTATTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTCGACAAATTTGGGAGTGAAAATGAGCTAAAATAAAAGACTTTATCTTATGCGG # Right flank : TATTTTTAGTATTGAGAAGTATTGTCAGAATCAGAAAAACTTATAATAGAAACAGAGTGGTCTTGTGGTTTGATAGGGATACTTATAAGGTTTTTAATTTTTCAAAAGTTTTATGATGAATGATATTACATTTAGGATACAATATAGTCTATGAAATGAACTGTTTGGAACTTTGAATAAGAGGATAAAGAAATGGATAAAAAAGATGAAATGATGATTGTAAGCCAGGAATCCCTTGAGAAAAAGATTTATATTATTAGGGGACAAAAGGTCATGCTTGACTTTGAATTAGCCGAAATCTATGGATATGAAACAAAGGCTTTTAATCAGCAAGTAAAAAGGAATATTGAAAAATTTGATGAAGATTTTATGTTCCGATTAACTGACGAGGAAGTCTCTAAACTTTCAAGGTCACAAAATGTGACCTTGAACAAGAGTGCAGGAAGAGGTAGTAATATTAAGTACAATCCTCATGCTTTTACCGATCAGGGAATCTATAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGAGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 6090-9471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAC01000184.1 Fusobacterium necrophorum BL contig0184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 6090 37 97.3 36 ....................................T TTTCATCTAATAGGTCCATATCCACTCTGGCGTTTA 6163 37 97.3 36 ....................................T CAATTCTTCCACAGTGCAGTCTTCTAAGGTTAATTA 6236 37 97.3 36 ....................................T CGAGGAAGAAATCCACTTTTGATTCATCTGCCAGAA 6309 37 97.3 37 ....................................T CTTGTTATTTTGTTCATTTTTATTCCTCCTTTTGAAA 6383 37 97.3 36 ....................................T ATATTAATTCTTTTACTAATTCAATTCTTTCACTCA 6456 37 97.3 36 ....................................T CATCTCCATTCCTCCTATTTCTTCTTTTATCAAAAA 6529 37 100.0 39 ..................................... ACTTGCATATTTATATCAAGTGTGTAACATTCGTTGAAA 6605 37 100.0 35 ..................................... AAAACCATGCTTCACCAACAATTTGGTATGAAGAA 6677 37 100.0 35 ..................................... TCTACAAATTCTTCTTCTTTGTCATTTTCTTCCTG 6749 37 100.0 35 ..................................... TTACATATGTTCCGCCTAGTTTTTCAATTTCTTTG 6821 37 100.0 35 ..................................... CTTCGAATTTCATAGCTTCTCCTTTTGTTTTGTAC 6893 37 100.0 38 ..................................... ATTTAACAGATAAACCTTATGTCTAAGGTATCCATCGT 6968 37 100.0 35 ..................................... TCTACAAATTCTTCTTCTTTGTCATTTTCTTCCTG 7040 37 100.0 35 ..................................... TGTTTTGCAAAAATCCTTTTTTCCTTCTTCAATAT 7112 37 100.0 35 ..................................... TTAATTCAATAGGTTTAGTTTCTTTTTTTACTAAA 7184 37 100.0 38 ..................................... AGAAATATTTAAATCTGTTATAATCATTCCCAGTGGAT 7259 37 100.0 35 ..................................... TTTCAGCTGCGAACTCCAATGCGGAACCGTCGTTT 7331 37 100.0 37 ..................................... TTTTTCTTTGTATACATCTTCCGGTAAGGCTCCGTCT 7405 37 100.0 34 ..................................... TTTCCAACTCCACCTTTATGCTGTTTTACCAAAA 7476 37 100.0 33 ..................................... TAATAATTTAAAATTTTCTTAAATGCATTTTCT 7546 37 100.0 35 ..................................... GAGCAAATTTTTTCCTCATTTTCTCTTCTAAACTA 7618 37 100.0 33 ..................................... TGTTTCACACTGTCTTTTTCTTCTGCCGCTATT 7688 37 100.0 36 ..................................... GAAAGGACGTTAGTCCTTTCTTAGAACAAAATCTTA 7761 37 100.0 36 ..................................... ATAATTCCGACCAACACAATTACTGCATTTGACATT 7834 37 100.0 35 ..................................... TGTTTACTTCTATACATATTTTCATCAACTTCTAC 7906 37 100.0 34 ..................................... ACTTTAACATAAATTGCAAGTATTTTTTTTATCT 7977 37 100.0 36 ..................................... TGCTTACAATTCTTTGAATTTCTTCCTTGTCAATCA 8050 37 100.0 36 ..................................... TCAATTTAATATCCATTATTTTGTCGCATTAAATTT 8123 37 100.0 35 ..................................... ATGTCCAACCTTCGTTGATATCCCACCCTTCATAG 8195 37 100.0 35 ..................................... GAAATATGATTTTCTTATTTCTAAATTGCTTTTGT 8267 37 100.0 35 ..................................... TCCATCTCCTCTAACATTGCTCCTAATTTTATTTG 8339 37 100.0 34 ..................................... TTTTTAATCTGGCTCATGTAAATTTTTTTCATTT 8410 37 100.0 35 ..................................... CTCTTCGTAACTTCCTTTTAAAAATAAATTCTTTT 8482 37 97.3 35 ...................G................. TCTTTTCCCCACTACAGATACATTTAGTGATATTT 8554 37 97.3 35 .................G................... CCATACTTTGATTCCCTATATATTCTTGCATTTCT 8626 37 97.3 37 ....G................................ ATTCCAAGCTCTTTTGCCATTTTGCTTAAAGAAATTT 8700 37 97.3 34 .................G................... CCCATCATATCTTCCATTGCTTTTTGCGTCACAC 8771 37 97.3 37 .................G................... AACTTTCTCTATGATCATCTATTTCTTCTTTAAATTT 8845 37 97.3 34 .................G................... ACTTTAACATAAATTGCAAGTATTTTTTTTATCT 8916 37 100.0 39 ..................................... AGGAATATACACTTCCTCATATACTCCTTTTAAAAATAG 8992 37 97.3 36 .................G................... ACATTTTCTCATCTCCCATTTTTAAAAATTTAATGC 9065 37 97.3 35 .................G................... TCATAACTATAAATGTGATAATCGCAATGATGTAG 9137 37 97.3 37 .................G................... ATTTCTTTAACTTCTTCCCATTTCTTCATTTTCATTT 9211 37 97.3 39 .................G................... CATTGATACCACTTCCTTTTTTTTCTTTTATTTTTGAAA 9287 37 94.6 35 .................G........G.......... ACTAGCAAGAAAAACTAATATCAATCGTTTAACTC 9359 37 97.3 35 .................G................... TCAAAGACTACATCAGCCATATACTCCCCCCTTCA 9431 36 86.5 0 .........................A....-A...GT | CC,CG,C [9455,9460,9464] ========== ====== ====== ====== ===================================== ======================================= ================== 47 37 98.6 36 ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Left flank : GAAAGAAGAAATAAAATACGAATTCGAGTAAAAATATGCATTGTCTCAAATAAAGTTTTTATAACATTAATGCTATTATCTGAAAATTTTAACATAAGAAAGGATTCTTCCAATTGATTGATTTTCTTTAGAAGATGACATTTCGTATTGATTTTAGAAAACATTCTGTATTTAGTATACACGGTATCAAGCTCTACTAATATTTTTTCCATATTTTTTCTCCTATTCTTGACGATTATATATTTATACTATACAATAGAAGTGGAAGAAAATAAAATATTTTTTTACGAAAGTATTTAATGTTTTATTTTATGCAATATAAAATCTTATTTGAAGGGAGGTTATGATTACGAAAGGGAAAATAGTCATATCAAAATATAAGTACTTTTTGAATAAAAATGTAGAAAAGTATCAATTTATTGTACACTTTTTTAAAAAAATTACGAAACAAAATAGTCAAAAAAGGATTGGAAATTATGAAAAATAAACACAGATTGCTA # Right flank : TCGCCCACCTCTATAGGTAGTGTGATGAATTGCCCTATTGTTTTTTAGAGAACAAAGAAATATACTGTAATCAGTAGATATATAAAAATAGGAGTAAAACCAATGGAATTAGATAGTAATTGTCATTCAATATATAAGAAAATATCTTTGGAAAGAAATGTTTTGGTCTAAAAGTTTTTGTTTGTTGACTACTGGGGGGAGCTCCTATGGAAGTCATTAAAAAATATAGAGAAGAACAAGAACAAAAGAAGAAATCATTTTGAGGGAGGTGGACGGGTGAGACAACTAAAAGCATATAAATTTAGAATGTATCCAAGCGAAGAACAAAAGATATTTTTTAATAAAACGTTCGGTTGTGTTCGTCTTGTCTATAATCTTATGCTACATGATAGAATGAAAGCATAGGAAGAAAGGAAAGAGACCCCTGATAAAAAGACAACATATCCAACTCCTGCAAACTATAAAAAAAGAGTATGAATTTCTAAAAGAAGTGGATAGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAAGAGAATATCCATCATTAATGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 5597-5891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAC01000167.1 Fusobacterium necrophorum BL contig0167, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5597 30 100.0 36 .............................. TGTTTTTTCTTTCATATTTTTTCATCTCCTTTTCTC 5663 30 100.0 36 .............................. TTATCAGTTCATCTGCTTGTGTCTTAATCAATCCCG 5729 30 100.0 37 .............................. CGATTTAACAAAGGAAACATATAAACCGGATGATTCT 5796 30 100.0 36 .............................. AATCTAATTCTTGGTTTTTATCCTGATTGTTCATAT 5862 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 100.0 36 CTCATAATCGAAGCAGACTGAAATTTAAAT # Left flank : CAGCGTGAAGAGTTGATGAAATATACTTTGACTGTAGAGTCTTATCTTCTTAAAGGAGTGAAAATAGAGAAAAAGATAGCAATAAATTCTTATCAAGAGATAAAGATAGTCTCTTGTGAGTATGATTTCTGGGTAGGATTGGGGAAGATAAATAAGGCAAAAGAGAAGGAATAGGATAGAAAGGAGTTTCATTTGTAATAGGATTTGTATGAACCTGGAAATGTTTTAAGTTGTTACCAAAAGAAAAACATTAAAAACATTTTTAAGGGTTAACGATAAAAAAGTATATTGAAATGAAATAATATGAGAGTATTTTTTTGCTTGTCGCCCCTCAATAATGTAAATCTCCTAAGAGGTCGACAAACTATTTCTAGTAAGCGACTAAAGATGATTTTTGACATTTTTTGTTTGTTGAAATCAATAAAAAATGATACAATTACAAGAGGTTGACAAATTTGATGGTAAAAATTATTTGAAATAAAGAACTTTATCTTATGCGG # Right flank : TTATCCAGTATAAACCCTAGCTTATCGCCTTGAATCATTCATATTAGTGCTACTTTCATTTCTTTGTCTCTGAGAGAGAACTTTTTTCTGTATTTTCTTTCTAAAGTTTTTTAATATAATTTTTTATTATTCTTACTTAATGATAGGAAATACTATTGGCATTAAAATACTTAAAATATTGGGAGTTTTATAAAAAAGTGCTAAGACAGAAAGTAGAAATATAATAATAATTTTAAAATTTAATTTACTTTGGAATACGATAGATATGAAATATTAAAAAATGATTAGTTTATAATTAAATATATATTTAAAATTCATGAGATGGAGGTAAACTTGGTATGAGACTTAAGTATGGAGCGGTGTTATATGTTGATAATAAAGGTAATAAACATATTGGATATTACGATGATGACGATGAAGAAGGAGCCATCATCTATCAGGGAGATTTCTTTTTGTCAAGAGAATATCTTGTTATTCCTTATAGAAGATGTACAAATAAT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCATAATCGAAGCAGACTGAAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 10801-13346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAC01000167.1 Fusobacterium necrophorum BL contig0167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 10801 29 100.0 39 ............................. GGCAGTTCCCAACAAATAACAAACCATCGTTGATTTCTA 10869 29 100.0 37 ............................. GGATGAAAAATTAGTACATATTAGCTGGAAAACTTTA 10935 29 100.0 38 ............................. GAGGGACAGTAAAGGTAATTGTAAGTGTGACAAATAAA 11002 29 100.0 36 ............................. GCTGCTATGGATGAATATATTTTTATCTTTTTCATA 11067 29 100.0 37 ............................. GATATACAATCAAGGGAATCTAAGGAGGAAAATATGG 11133 29 100.0 38 ............................. GCTTGCATCTCTAGGCATGATAAACGGTGCAGAATGCA 11200 29 100.0 38 ............................. GTCAGACAACTTATGAATTTTTTCAGAAAATTGTTTAA 11267 29 100.0 38 ............................. GATAGAAGAATGATGCAACTTCTTTCTTTTTTTCTTGT 11334 29 100.0 36 ............................. GGGAGATCTTTTAATGAAATATGTTCAAGGTCTTCC 11399 29 100.0 38 ............................. GTTTAGAAGTTTGTGTTTCTTCCATATCTTCCCATTTA 11466 29 100.0 36 ............................. GTTCTTCAGTGCCCATTTGACAATGTCTTTCTGAAA 11531 29 100.0 36 ............................. GGCGAGATGAGGAAAAGTACCGAGTAGAGTGCTTGG 11596 29 100.0 39 ............................. GTCCACTTTCACTTTATCACTAAACAGTAGATGTCGCTT 11664 29 100.0 37 ............................. GTTTTTTTCGAGAGGAGATGTGCATATCGTAAAAACG 11730 29 100.0 37 ............................. GAGAATATATCCAATACAGTGCCGCCAATAGGACAAC 11796 29 100.0 36 ............................. GAAGTAGGATTTCCTACTTAGGTACTAAAGGAGGAA 11861 29 100.0 37 ............................. GGATTTCGGATTTACAAAATTATGAGGTTCCTGTCGA 11927 29 100.0 37 ............................. GGAAGAAGAGAATATCTGGGTCTTGTTCAAAAATGGG 11993 29 100.0 37 ............................. GATTTATTTTCCTTCATGGGAAAAGACAGTTATTGAG 12059 29 100.0 38 ............................. GGAGTTAGCACATAAAATAGGAGTAGAGTTTGCTAAAA 12126 29 100.0 37 ............................. GTTCAATACCATATTTCTCAATCAACCCTTTTTTTTT 12192 29 100.0 38 ............................. ATTGATTTTCTGTATTTATAATTTCATTGGAAATTCCT 12259 29 100.0 37 ............................. AGTGTATTGTAAAAATATATATCTTTCATCTTCAGGA 12325 29 100.0 37 ............................. TTAAAAGATAAAGAAGAGATGGCATTACAAGCCATGC 12391 29 100.0 37 ............................. TTATTTGTCGCTCGCTCAAGATGAAGAAACAGGTATC 12457 29 100.0 37 ............................. TTCGTTGATTTCTAAGATTTTATCGTAATTTGTAACA 12523 29 100.0 38 ............................. TAAAATTGGCTTGGTACTGATATATTTAGTAATTATAG 12590 29 100.0 37 ............................. TTTAATAAATCAATAAAATTCTTTTTCATACTTATCC 12656 29 100.0 36 ............................. TTTGACTAAATTAGATATAAAAAAAGAGCAAACCAA 12721 29 100.0 39 ............................. TATACTTTCTCCTGATATTTGTAGAGTGATAGTAAAAGT 12789 29 100.0 36 ............................. TGAGGTGAGTTTAGAGTGGGAATATTACCAGAAATA 12854 29 100.0 36 ............................. TGAAAATTCCATCAATGAGGAGAATTTTCCATATTC 12919 29 100.0 36 ............................. TTTGGGTAAGAGAGAAATATTTCCATATTCTCTCTT 12984 29 100.0 38 ............................. TCACTTCTTCTAAAATAGAGGATTCTTTGGGAGAAGGA 13051 29 100.0 37 ............................. TTTTGGAATTGTAATTTTATCCTCTAAAACATCTGAA 13117 29 100.0 38 ............................. TTCTTTTGAGTACTCTGAAATATCTATTAAATCGGTAA 13184 29 100.0 38 ............................. TCACATTTACTCTCTTTTCTTACACTATTTCAATCTTC 13251 29 100.0 38 ............................. TAAAACAATCGCCTTTCTATTAAATTCTCCACCAATGC 13318 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 39 29 100.0 37 CTTATAATAGAAACAGATTGAAATGTAAA # Left flank : GCATTTAATTGATTTTGAATGTATTAATGAAGTAATTTTAATAAGAATATTAGGAATGACACAACAGAATATACTGTAGATAAGTATCGAATGGAGGTCTTCATAGGAAATGAATTTTAACTATAAATTTTAAAGAGCTGATTACTATGTGGACTCGTTTTAGGTGAAAGCTTCCACTAATGATAGTATGGCAATATACCTTGAGGTTAATTGATAAAAATTTATTTAAGAAGAAATGAAAAAATAGATTAAAATTGTCAGTAAAATATATGAACAAGAATAAAGAAAAGTATATTAGAGCCAAATAATATAAGTTTTTATTTGTCGACCCTCAATAATGTAAATTTCCTGAGGGTTTGACAAACTTACTTTTAGTGAGGGATTAGGGATGATTTTGACATTTTTTATCAATTGAAATTAATAAAAAATGATACCATCATAACAGGTCGACAAATTTGGGAGTGAAAACTAGCTGAAATAAAGGGCTTTATCCTAGTCGG # Right flank : TTTGTAGACTAGGTTCTTTGTCAAATCGTGTTGGTGAAAAAAACAAAATAATAAAATCGCTAGGGGAGGAATCTTTTAGATTTCTCCCTCTTTTAATATGCTGTTAGGATTACAAATTAAGATTCTTCTGCGCAAGTTTTGAAAACTTTTGTAACCATATGAAATCCGTTTCATCAACTTAATCTTTTGATGGAAGCCTTCTACAATTCCATTTGAGAAAGGACTGTCAATACTGTTTAAAATTTGGAAAGTAAGTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTATAATAGAAACAGATTGAAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //