Array 1 3025-1172 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJS01000110.1 Paenibacillus larvae strain G25-75 G25-75_contig000234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 3024 32 100.0 35 ................................ AATATGGAGCATCTGATGGAACTGGTTTAATGCGG 2957 32 100.0 33 ................................ CCATATACCACAAATGACGCGACCCAGTTGATA 2892 32 100.0 33 ................................ ATGAGTCTCTGTTTTGCAGTAATAGCCCGGGCT 2827 32 100.0 36 ................................ GAGAGATTCTACCCGTTTTACTTCCGACAGCTTTTC 2759 32 100.0 35 ................................ TTTTTCCACATCCTTAAACCGGGCAAAATATTCCG 2692 32 100.0 39 ................................ ACATACGTTGAGCTATTCGCGGGCATCGGAGGATTTCGA 2621 32 100.0 33 ................................ ATTTTCTCAAAAGTTTTCCCGTCAACATGGACC 2556 32 100.0 34 ................................ TTCTTAGCCATGTAAATAATCCCCTTTCGCTAAC 2490 32 100.0 37 ................................ TTCTCTTACATCAACAATCCCTTTATAAATAAAGAGT 2421 32 100.0 37 ................................ CCAAAGCGTTAGTTCTCTTCGGTTTACTTTGTTTTTA 2352 32 100.0 36 ................................ TTTTAATATCGCATTGCCTAATCGCGTTTTAAGATC 2284 32 100.0 34 ................................ TCAAGCTCGGCGACCTCGGCTCTGCGTTGGTCTA 2218 32 100.0 35 ................................ CCTTGGGCGTCGAAAAATTCAATACCCGTTTGCTT 2151 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 2084 32 100.0 35 ................................ TTGGGCAGTATTGGTCACCTCCGATCGGATAGTCG 2017 32 100.0 38 ................................ TACAACGTCCCTTTTAGCTCCGTTTAGTTTCTCGTACA 1947 32 100.0 33 ................................ GCTAATGGAAAACAAAGAGAATCATATATCAAA 1882 32 100.0 34 ................................ CTTGAAAACTCCTGTTTTATTGTTCATCATGGAA 1816 32 100.0 37 ................................ TCGAAGTAATCACTTCCAGCCCGGGATATCTTTAGGC 1747 32 100.0 34 ................................ TCCAATTACCGGACAATGGCCAAGAAAAAAGAAA 1681 32 100.0 35 ................................ TGGCCGCCCCTTGGATATTCGTACAACGCACTTTC 1614 32 100.0 36 ................................ TAATTCAAGTGATACGACCATAGCCGCATTGATGTA 1546 32 100.0 36 ................................ ATGTTTGCGTCAACGACGGCCTGTTGCTGCTTGCTC 1478 32 100.0 38 ................................ ATTAAAAATTTACCAAGTCAAGCCATTGACTGGGGAGC 1408 32 100.0 37 ................................ ATCCGGTGCATCAGAGATTGGCTCAACTGTATTTCAA 1339 32 100.0 35 ................................ CATCACCGGGGTGCAGATTTATTGTCAGCGATTTT 1272 32 100.0 38 ................................ ACCATGAGTTTGCAAAATACATTCAGCGAGAAAATCAC 1202 31 78.1 0 ...............T-.C...CTT...G... | ========== ====== ====== ====== ================================ ======================================= ================== 28 32 99.2 36 GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTGTTAATTACTTACGATGTGTGTACGACCAATAGTGATGGGCAAAGAAGGTTGCGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGAGTCCAGGACTCTGTCTTTGAATGCAATGTAGATGCAGCCCAATTTGCCAGTTAAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGTTTTATCAATTAGGCAATAATTACAAGAACAAGGTTGATCACATTGGTATGAAAGAATCCATTGATTTGGAAAAGCCATTGATTTTCTAATGCGGATGCATGGTGCGAATGTGAAGTGCACATGAATTTCCTGGGACATTCGCACCATGCATTTACCATATAAATCCATTTTATTGTCTATAGGCATTTTGGGATTCATTCAAACTGAACAGAAAGATCATTTTTTTGAATGGTGTGATCAAAATATGTTTAGTTTTGAATATTTCTCTCAATTTTCGCT # Right flank : GGAAATATTATTTCCACCCATACTTCCAGGTTAGACTACAAATTGATTTACAAGATAGTAATCGGGATACCTAATAACTCCAACATTTACAAGATGTTTACTGCTTGAGCTACTATCGAACCAATATTGAATATCAGTACCTCTTGTCAAATATAATGCCTCTGATTGGGCATCGTGATCAGAAAAATTCATGATTACTTGTTTGCAAGATGAACCGATTTCTGATGAACAATCTTGCTGGGTAGCTGCAGATGATGGAATTGGAATTATGAGTAAGGCTGCAAGAATAGAAAAAATAATTGCCATTTTGGATTTTACATGTTTCATCATATTCATATTAGCTTCCTTTGGTTTGAATTTTTACACCCTCCACACAATTGCAATCCTTCAAGCTTGATATATTGATAGAGGGTTCCATCCCTTCCTGCCACAAAACCACATTCACTCCTTTATTAGTCTATTATTGTAAATCGTTCTCCTTAAGATCTATTAACCTTCTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1189-2899 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJS01000014.1 Paenibacillus larvae strain G25-75 G25-75_contig000138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 1189 32 100.0 38 ................................ ATTTCTGTTGTACGTAGTGCTTTCAAACGTCCGGATAA 1259 32 100.0 34 ................................ AGTCTCTGAACTTGTAGTGGCTGGAATCACTACA 1325 32 100.0 36 ................................ CTTGATCTCAAGCTGAACAACGGTGATGAACGTCTG 1393 32 100.0 35 ................................ TCAACATAATTTTGTTTTCTAATTAAAAGTAAATC 1460 32 100.0 34 ................................ AAAAAAACAGTGAGCGGAATCAGAAAGCAAGCCG 1526 32 100.0 35 ................................ AATGATGGAGCAATATAAACACGCAACCAATTATA 1593 32 100.0 33 ................................ ACTTCTTTTTCTTCAAAGGTGACCGTTTTGAAA 1658 32 100.0 35 ................................ AATATCCACGAATTAGGTTATACTTGACGTATCTG 1725 32 100.0 38 ................................ TCGCAATCCGTGGAATCCAGTGGGAATCAGAAGAAGCC 1795 32 100.0 36 ................................ AATATTAAGACCATGTAATTGATTAACATGTTTGAT 1863 32 100.0 35 ................................ TCCCTACCAAAAGGAGGGTAGGATTAGTGGAAGTT 1930 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 1999 32 100.0 33 ................................ ATCTTGATTAAGATACAAACTATCAATTGTGTA 2064 32 100.0 37 ................................ ATGGACACGAAGCACCTTTCGCAATTAGCGAACACAC 2133 32 100.0 33 ................................ CTCACCGGCCCCTAGCGTCAGTTCGTTCCAGCG 2198 32 100.0 34 ................................ ACAACATATCCTGATCAAGCGCGTTTAGTAACCT 2264 32 100.0 35 ................................ ATTTTAATTTTCCGTTCCCCTCGTGTTGTTATCGT 2331 32 100.0 39 ................................ AGATGCGGTGATCGTTACGCGAGTACGTAATTTGGTCAC 2402 32 100.0 34 ................................ ATACGGCAATGAATATGGGCCTCAACAAGTTCTA 2468 32 100.0 35 ................................ GCTGAACTCGATATCCATATCTGGAGATAACTCTT 2535 32 100.0 33 ................................ GGCGATCAAATGGAACCCGGGGAAACAATTAGA 2600 32 100.0 34 ................................ AACCATGTAAACGACGACTTTGCCGTGTATTCTT 2666 32 100.0 37 ................................ CTCAACGCTTCCAGCAAAAATAAACCCGGTATTGCCA 2735 32 100.0 36 ................................ ATCTCTCTATCATGGAAAAAAATAGACGAATAAAGG 2803 32 100.0 33 ................................ ACACTGTCCGTCAGAAAAAACCGACTGTTCCAC 2868 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 26 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATCTCCCTAAAGTTTCCAAAATGCTGGCTGCACATGTAAATTGTGAAGATTTCACGGAAGAAGTTATTGCCAAAGGGCTTGATGAGAGGACATTTGGATTGTGGAATTTTCCTTTCCCTTAAAGGTAAATATGCCATGACGTCTCGCGCTAGTAATGGAAGACGATATAGGGTATTATGGAAGTGAAAAAGAGTAGGTACTTTTATAATTGAACGTTACTGATACATCATAAAAAGTGATAGGGAAGATATATGTTTATCAAACATTATCCAGGTAACGAGTATATAAAGAAGCAATGATTTGGAAAGGTTTATTTTTTTCTGGTGCGAATGTATAGTTCACATGAATATCCCGGGAGATTCGCACCATTATTTTACCAAAAATATGCATGCATTTGGGTTAAGTATATTTGATTGCAATAAATTTGAATAAAAAAGTCATTAAATTGAATGATTTAATCAAAATACGTTCAATTTTGATTGTTTTATTCAAATTTCGCT # Right flank : TTTAGAACGGCCATTTCTGTTTTTAAATGGGCCAACATAGGACAGATGAGGGAAAACCTGCTAGGAGTGAAAATTAGTTAGCAAAAAATCGTGGAAGGAAACTCAATGTTGAACCAGTGACCGGATTAGCCCGTATGCTTCATGACATGGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3547-4116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJS01000014.1 Paenibacillus larvae strain G25-75 G25-75_contig000138, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3547 32 100.0 35 ................................ CAGAAGTACCCCTTGGGACATATGATGTGAAGATT 3614 32 100.0 35 ................................ GTGAACAGACCTCATGATGACCAATAAATGATTAC 3681 32 100.0 34 ................................ CATTTTAGTAACAAAACTGGAATAGCTTTCGATA 3747 32 100.0 33 ................................ TCCTGATTCTATGACAACGTCAAAATATTTCTT 3812 32 100.0 34 ................................ TTTCGTAATGTAAGTTTCATGTTTTCCAGACAAA 3878 32 100.0 38 ................................ GTCAATATGGGATCGATAAATTTGGAGCGAATTGATAA 3948 32 100.0 35 ................................ GAATTTGTAAAAGTTCTACAAGATGAAGATATTAC 4015 32 100.0 38 ................................ ACCACAATATTTTTTAGGCCATTCCAAATGCCCTTGAC 4085 32 90.6 0 ........A.........A............C | ========== ====== ====== ====== ================================ ====================================== ================== 9 32 99.0 35 GTCGCATCCTATACGGATGCGTGGATTGAAAT # Left flank : GGGGAAATACACGCACCAGTTCGCAGCATACATATTAGCGCGACAAGTAGTCATCTTTGCAAGCAAGTAAAGCAGCTTCTCTTGGTTAGGGGCTACATCAATAGCGGGCATGCCTGCTTCTGCATTTGTTTTCAGTATTGTATCCATAGCGGAATCAGACGCGTGAAGCAAAAGATAGCAATGGAAGCTGATATGGAGTATTATGGTTATAAAAAAAGTAGATACCTCTGTAATCGATATTTTGTCTTGGCAATATTTTTTACAAGTGATCGGGGGGATATTATGCTATCAAATTATTATCGAGGTTAAGGACTTAATTTCTAGTGCGAATGTAAAGTACACATGAAAATCCCAGGAGATTCGCACCATCATTTTACCAAAAATATACAGATATCTAGTTGTGGTTATTTTTGATTGCAATCATTTTGAGTTAAAAGATCATTATTTAATCGATTTAATCAAAAAAACATTCTATTTTGATTGATTTGTTCAAATTTCGG # Right flank : CCTGGGCCTTCACCCACCCTAAGGGTGGGGGCTAATTAGTTGAGTCATATACGAATGAGCAGTCCGTTTTTTTACACCATCTAAACATACGAAGAACGGTATGTAGATATAAAAATGAGCTAAGAAAGATCAAGAACAAATGGCTTGGAAAGATTCAGCACTAAAACAAAATTCTCAAACTCTTCTAAAAATCTCATAAACAAAAGCATCCTCACCGACATTACTTCCACTCTTTTTGGAACGTTTTTTATGTATTCCCATAAGGGCGTCAAAGCATCAGCGAAAGAGGCAGAAAACACATCTTTGGAAAAAGTAGAGGCAGAAACCTTAAAGTCAGCAGTGGGCGGACCGTTTTCTAAGGCAAAAATTTGAGGGACCTATGTCTCTTAGAAGAGCTGTTATCAGTAGGAGGAGTGGATGCCAATGCGCTCGGAGTACCGGCTGACCAAATATCGCACATTCCTAAATTTTGTAAAAATTACTCCCTATTAATTGATCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATACGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 63613-63189 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJS01000228.1 Paenibacillus larvae strain G25-75 G25-75_contig000352, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 63612 30 93.3 36 ......T........G.............. TGTCGGATATCCGTCTGATTTTGATTTAATCGTCAA 63546 30 96.7 35 ................T............. ACTGGAAATGGGATCTTGCAGATATTCTTTTGCGA 63481 30 96.7 36 ................T............. CTATGGACCGCCGCCCGGTACTGGTCGGTTTTACTG 63415 30 100.0 35 .............................. TAATTACTGTATAAAGCACAACCCGAACGCAATTG 63350 30 100.0 37 .............................. GGCTGTGGGTGAGCCTGTCAATCACATACTTTTTAGC 63283 30 100.0 35 .............................. TTGCAGAGGAGGATTGTGAAGAAGATGAATCAATG 63218 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTTGACAGTAACACAAGGTGTATTGAAAC # Left flank : GTTCCCACCCGCGTATGCAGCCCATGTGGATACGATCCATTCCGGTACGCTTTTCGATTCTCTGTTCGTTCATAACGATCTGCTTCCACTTGTTCACTCACCTGTGCTTGTAAGACTTGGTTCAGTACAGACTCGAGCAGCTTGGCTACACCCGCATCCTGAGAATTTCCCAAAAATAGTTGATGCAAAAGCTGCGAATCTACGTTAATCTGGTATTGAGCCATTTCATAACACCTCATATATTTAGAATTTTGTGTCCCAACATTATTCTAACTGAGGGCTATGAATATGGCTCCTTTCATTTTTTGGAACCTAGCTTTTTACACAATTATACGGACTCAACTGTGGATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TGTCGGCAGCAAGAGTTCTGTCGGTTTACGTTGAATGTTGGCAGTAACACAAGGCGGATAAACCCTTAAAGTTGGACACGCACTCACTTAATCTTGCGGTTTCATTAAATTTCATTTAGACTCGAACTACTTTGATCGGAATCGCTTCCACTTGGTTCTGACTGTAAAATATCTCAGGGACCATATCCCTAATACTGGAATGAATTCTGTGTTTGTTATATTCTAACGTTCCATTTCTTGAGTGCGTTGATGAAATAAAACGAGGTAAAAAGTGACTCGTACAAAGAGTTATCAATTTACCTCGTTTTTGGATTGCATATCTATAAGCTTATTCTTGCATTATAAAACCATTTCTCATCATACTTTGGTGTATGAATTCCCTATATTGGATAATAGCAATTATTATTCAGAATAATTCAATTGAGGATGCCTTTGTTCCATGTGAGTACGCCTTTGTTCCATATCCATATGAGGATGCCTTTGTTCCATGTGAGTACACA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACAAGGTGTATTGAAAC # Alternate repeat : GTTTGACAGTAACACATGGTGTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 5622-4586 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJS01000237.1 Paenibacillus larvae strain G25-75 G25-75_contig000361, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 5621 32 100.0 33 ................................ CCAAGTCTGGTAAACCAATGTTGACCTGCTGGA 5556 32 100.0 35 ................................ GGACAACTGGACATATCAAAATGATTGTAGAATTG 5489 32 100.0 36 ................................ GCGAAACACCCCACCGTTAATTTCACGCAATTTCCC 5421 32 100.0 33 ................................ AGACGGTACGTTAATCGTACCAATGACAAGGAG 5356 32 100.0 36 ................................ ATTTTCCCATCATTATCCGTGATGGAGATTTTAAGC 5288 32 100.0 34 ................................ ACCCAAAATCATTTTTTCTGTGTCGGACAGCTCA 5222 32 100.0 34 ................................ TTGTGTAAAAAACTGATTTCGAATGAGCGCCAAA 5156 32 100.0 36 ................................ CTCATAGATTAAATCTTCCATGCCAAACATTTTACG 5088 32 100.0 38 ................................ CAGTCCCGCAACATGAATGGGACTTGTGGGCTCTTGAC 5018 32 100.0 35 ................................ CATGATGATGTCAAAACGCTCAACGATGTCGCCGT 4951 32 100.0 34 ................................ TTTCGCATCGGTCACCCTGCGAAAAAATACATAA 4885 32 100.0 35 ................................ AATCAATTCAGATTTAGAGTGAAATAGGTCCTCAA 4818 32 100.0 39 ................................ AAAAACTCTCTCACCTAATGCATTTGCTATTGCTAGCAA 4747 32 100.0 34 ................................ CGGAAGGGAAGACCCTACTGAAAGCAAGGAAAGA 4681 32 100.0 32 ................................ TAAAAAACGAGATGCCAACGGGTCGCCCGGAT 4617 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 16 32 100.0 35 GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGACAAGGTTGCTGGTTTTAATAACTTACGATGTATGTACGACCAATAGTGATGGGCAAAGAAGGTTACGAATGGTTTCGAAAACATGCCAGAACTATGGCCAGCGGGTTCAGAACTCTGTCTTTGAGTGTAATGTAGATGCAGCTCAATTTGCCAGTCTAAAGATTCAACTTATAGATATTATTGATCCGGAAAAAGATAGCCTTCGCTTTTATCAATTAGGAAATAATTACAAGAACAAGGTTGAGCACATTGGTGTGAAAGAATCCATTGATTTGGAAAAGCCATTAATTTTCTAGTGCGGATGTATGGTGCGAATGTGAAGTGCACATAAAATTCCTGAGGTATTCGCACCATGTTTTTACCATGTATATCCACTTTTTTGTCTATAGGCATTTTAAGATGCATTCAAACTGAGCAAAAAAATCATTTTTTTAAATGATATGATCAAAATAGGTTTAATTTTGAATGTTTCTCTCAATTTTCGC # Right flank : TTTTTGCGTAGACTACGAGGTCACTCCCGCAGGTTGTAAAGGAAGCTCTGGAAACCAGAAACAAAGCAGCCGTGGCAGACGTTACGAGCTTGCCTCCAATATGCTACATCGATGGGTAAAAGAGTATGAGTCAGGAAAATGAGGAGTGATTTCGGTAGAGGGGATTTGCCCTCTGGAAACAAAGAAGTTGTCCCAAGAAAATGACCACTTAAAACGGCTGCTAGGGGAAAAAGATCTTGAGATCGCTATTCTGCGTGACCTGGCAAAAAAGAAAAACCCTCACTTGCTGACAAAGTTGAAGTAGCCGAAATCTACATTCAACAGGGATACGCTATAACGCTCGTGCTACGTTTGGTGAAAGTCCCACGTTCGACTTATTATTACATGAAAAATAAAAAAGTCATGAAGAAAACAGTTAGTGAGGGACGTCCAGCGCCAGGGTATTCCTATCAAGCGAATGGAACAAAAGTACCTGATGAACATCAAGAATGGCTCATGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 30585-29671 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDJS01000249.1 Paenibacillus larvae strain G25-75 G25-75_contig000373, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 30584 32 100.0 35 ................................ AAGATCTTTTTGTTTTAATTCTTTTTGTATATCTT 30517 32 100.0 36 ................................ AAAAAAGTCATACCAATCAATACCTTGTGCAACAAG 30449 32 100.0 36 ................................ TGGAATTCTATTAGCGAAATCCAGTCAACGAGCATT 30381 32 100.0 37 ................................ AACTCTACTGCATTGTCCGCGTTAATCTTAATCTCAA 30312 32 100.0 40 ................................ TCATACCTTTGGCAATCATGTATTCACGGAAGCTTATAGA 30240 32 100.0 38 ................................ TATTATTTGCGTCAAAGCAGCATGTAACTCTTCGGCCC 30170 32 100.0 34 ................................ GTCATAAAGGAGCTGATCTAATTGGATGTTTTCG 30104 32 100.0 38 ................................ ACCAGCTTCCGTATCCCAATCACAGCCATTATAGGCTA 30034 32 100.0 36 ................................ TTTGATTTTTGTTGAATTGATCATTTTTTATCCCTC 29966 32 100.0 33 ................................ GAAAAACAAATACAAAAATAATTACACCAAGAA 29901 32 100.0 34 ................................ AGATTTCGGGACCAGCGATGACAAAACGTATGAA 29835 32 100.0 37 ................................ CCTTGAAACTCCCAAATTGGTTAATTAAAAAGATCAC 29766 32 93.8 31 .............................T.G ACCCGATGCCAGAGTACACTGCCCTCCCTGA 29703 32 78.1 0 ..TA...........A..AGT..A........ | C [29675] ========== ====== ====== ====== ================================ ======================================== ================== 14 32 98.0 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAGCGAAAGACAGAGGGTACGAATGTTCATGCGGATTCAACGCTCATCGAGATCGGGTTGGAGCGATCAATATCATGAATCAACCTGTGGCAGATGGTAACAGTCTGTCAGCCTAAGATGCTATATGCACTGTCTTAGGACGGGCTGATGAGACAGCCCTGAACTTGGGGGAACTACGGTTAGCAGAAATGCATGACCGACTACCACCCAAGAATCCCAGTGATACCGAAGGTGTCAGCCGTGGGAGTCTCAAGTTATCAATCGATATAAGGCTAACGGGTGTAAAAGAAGCAATTGATTTGGAAGGTTCATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTATTTGAATGATTTAATCAAAAAACCGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : AAAAACTAGAGGATTTAACCACTACCAACTATGCCGTTTCAAGCGATCGGACGGAACGACGCGAAAAGGCATCCTATATTGTTTAGGATGCCTTTTTTTCTCACTTTACCGCATAAGATTCCGCAGCGGTAAAAAGATAATATGCCAGACCTGTCTGCCTTGACTCCATTATATTGCGATGAAAGTCATCATCCAGGAAAAACCGGGCTTGTAAAGCAAAATCTTCAGCGCTTGTGGCATGAACATTCTGATTCAGAAAATTAATATGTTCCCTGATCAAGCCCCTAACGGTTTCGTCGTCAAATTTCATTCCGGCTTTGAGAGCTTTGGCCATTTCCTCCATAAAACGATCCGCCCGGGAAGCCTTTTCGTTCATATCTTTAACATCTATTGGCCTGTCTTCAAGAATATCCAAACCATAAGTCTCTTTCAAATATTCTTTGTGCTCGGCTAAGGCATTTTTCCATTTTTGTTCGCTTTCAAACCCTTTGAACATGCTT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //