Array 1 85169-84902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQA010000001.1 Gilliamella sp. B14384G10 NODE_1_length_953933_cov_190.894706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85168 28 100.0 32 ............................ TAACGCCTCACAAATAGTTGTAGTGGGCGTAG 85108 28 100.0 32 ............................ TTTTGGTATTTACTTAATTATGACCTTTTGGT 85048 28 100.0 32 ............................ TGAATTAGCCCAAACGCTCAGCGTTGCCCAAT 84988 28 100.0 31 ............................ AAAAAGATGGTCAGCTTTTTACGCCGTGTTA 84929 28 75.0 0 ......C....CA...T....CA.A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.0 32 GTTCACTGCCGAGTAGGTAGTTTAGAAA # Left flank : AAGCCAAGTATAGATTTAACGCAAGTATAAATACATATTATTTTGATGCTTTTTTATCGAAAATAAAAGTTTTTTAAATCTGTTTTTTACAAAATAATCATGATCAAATCATGCTCGCAATTTTTTATTTGATGATGATTGATATGACTTATCGTGGTTATATGGATATTAGAAAGAATGCATTCTCAAATAGAATTAATAAAGCCTGCATTATGAGCACTAGATTCGAGTTTTAAAGACTCTTTTTTACTCAATGTCGAACTAGCGCAAAATCAATTATTGAGCGAGAAACAGCGCATATTAAAGCAAAAAATATAATTGATAAATGGAATAATGTTTTGTCTGTAATTAGACAACATTAGTAAAACAACCCTTTTTTTACCGACACTTATAATTCATTTAAAATCAAACAATTATAAATTGGTGTGAAAAAAGGGTTTTTAGTTATAAATTGGTTATTATTCTTTTTCTGAACAAAGTTTATTGTGTATAATGTTCTT # Right flank : TTCTGTTGAAACACTTTATTAAAAATGTCTAACTCATGATTTAGGCATTTGTCACTTTTTGACTGCTGCAAAATGATGAAATTGGCATTTAAAAATTTGAGGAAAAGGGTTTTTAATAACCGCAAATTTAGCGAAAAAATTAAATGTTAATTCCGAAAAACAAAATTGTAACTTAAACTTGAACGCTTAAGCAGATCACTATATTATACGCGCCTTAAAATTCATCAATCAGCCAGATACTTGAAAGAGTCCTAATGTTAATTAATGCCAAAGATATTCTTGAAAAATTAAATCCACATAATAAAGTAAACTACGATTCAGTTTTGAAAGAGGTGATTGCTGATTGGCAGTTAGCATCAGCACGACCAAAGTTACTAATTCATAGTTGCTGTGCACCATGTAGTACTTATGTACTGGAGTATTTGGCTCAGTATGCAGATATTACTATTTATTTTGCTAATTCGAATATTCATCCGCGAGTAGAATATGAATATCGTAGT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 601152-600824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQA010000001.1 Gilliamella sp. B14384G10 NODE_1_length_953933_cov_190.894706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 601151 28 100.0 32 ............................ CATCGTGGATTGCAGTTTGGGTTGGTCAAAAT 601091 28 100.0 32 ............................ TGTGATAGGCGACTGCTCTTTCAGTTGGTGAT 601031 28 100.0 32 ............................ ATTGCTTGCTGAGCTTGTTGTAATGCATTTTG 600971 28 100.0 32 ............................ ACTAAAAAAACGTGTGCCCTTATTTTCATAAC 600911 28 100.0 32 ............................ GGACAATAGTAAATATGATTTAAACCTAACTC 600851 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 CTTCAAGGCTGCATAAGCCGTTTAGAAA # Left flank : CCGAAAAACGTTTAACCGCACAAGGTAAATGGTCAGCCGAGGTAAAAAACAAAATGGTTGAAAAATGGGGCAGCCTTCATTTGAACTATCCACACCTTCATTTTGCTAGCAAAAGCACTGGGCAACATTTTATTATGTGGCTGAAACAACAAAAATGTGCAACGGCTGTTGAAGGAACATTTAATAGTTACGGACTCAGCAAAACAGCAACTGTTCCTGATTTTTAACTAAATAATAAGGGCATTATTATAATGCCCTTAGCTGCCAATAATTAACAATATTAACGGTACAAATTTTGAGGAGCGTACTTTTTAAAGCTAAAAAATTTGAGGAAAGGGGTTTTTAAAACCTAAATACCATGCAGTGTTAACCCTTTTTTTTAACTAAAAATAAAATTTTTAAAAATCAATTAATTGAAAAGCCACCAAAAAAAAGGGTTTTTGCAAAGTAAAATAGTCTTTGCCTTTTGCACAACAATGTTTATAGTATTTGGGGTTCTA # Right flank : CAACTTATCAAACGCCCAAAGTTCAAGGCTGTAAAAGTGGAAAATTTTGAGGAGCGGGGTTTTTAAGACTAAAATCCATCCGATAAATCACTAAAATTAGTTATAACATCAGCTAGGGTCAATAATAAAAGTTTATTTTTATCAATTAGTTTAGTGCTTCTCATTTAGCGACATCAGCAATGTGCTGACAACTGAGTGAGATTAGCATGACAAACAGGGATGTTTGACAAGGCTGTTGTTTGTCAGAAACAAATCACAGCCGGTGCGTTAAGAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGTTGGTAAAGAGGGTTCGCGTAAACCCTCTTTACTCGGACGTAATTGTCGTATAGAACTAGCTACCAAACAACAAAACGTCCGAAACTCACCGCATAAAAAAATTTGAGGAGTGGGGTTTTTAAAGCCTAAAATCCATCCGATAAATCACTAAAACCAGCTATAACATTAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAGGCTGCATAAGCCGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 3 614220-613410 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQA010000001.1 Gilliamella sp. B14384G10 NODE_1_length_953933_cov_190.894706, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 614219 28 100.0 33 ............................ CGCCCGGGCACCACGTTCCTGATAGAGCGAGCC 614158 28 100.0 32 ............................ TTTTCGGAAAAGGGTTTATATCCGAAATGCGT 614098 28 100.0 32 ............................ TGAAATGGTTATAGATGCAAGAAACAAAGCGG 614038 28 100.0 32 ............................ CCGACGAGTTCGCAAATCTATTTTTATGTCAG 613978 28 100.0 32 ............................ TTGAGTACAACCGCTTAACAGCAGCAGGCAAA 613918 28 100.0 32 ............................ TCACGCAATCGAATATCCATGGGTTTTGATAG 613858 28 100.0 32 ............................ TTAATTAAAATATTAATAATATCTTCTGTAGT 613798 28 100.0 33 ............................ TGCTATTACTGGACAATTTAAGCTGTTTGTGTT 613737 28 100.0 32 ............................ GCAAGAAAAAGAAGATTTGAATAATCGCCTAG 613677 28 100.0 32 ............................ ATGATGTGCCTGCTGATACTTCAGGGATTGCG 613617 28 100.0 32 ............................ CGTATGAAATTCTGACCGCTATTTTTTGCCGC 613557 28 100.0 32 ............................ ATATAATTTTTACGTAATTTTGTAATATCGCC 613497 28 100.0 32 ............................ ATATTGTTGATAATTATTTATTAATGCATCGA 613437 28 85.7 0 ....................C....TGG | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 32 GTTCAACGCCGTATAGGTGGTTTAGAAA # Left flank : AGTACTCAATTTTACCTCTAATTTAGCAGGATTAATCTTCTTTATTGCTGGAGGTGAAGTGGTATGGTCAATTGGTTTAGTTATGTTAGTTGGCCAATTTATCGGCGCAAGATTAGGTGCAAAAATGGTTATTGCTAAAGGACGAAAATTAATAAGACCAATGTTAATTACCGTTTCTACCATTATGAGTGTCAAATTAATCTATGAAAACTTCTTTTAATCATTGCTAATAAAATTTAGAACCAGTTTTAGTACAATCAATAAGCTAACAACCAAGAATACATTAGCCAATTAAAAACCCCGTTCCTCAAAATTTTGAGGAACGGGTTTTTTGCATTTCCCAAAGTCTATATTTTAAATCAATAATAAACCCTTTTTTTTACATCAAAATTAATCTGATAAAAATCAGATAGTTGAAATTAACCGCAAAAAAAGGGTTTTTAATATCAAAATTGTCATTTACCTTTATTTGAACAATGATTATATTATATTGGTTTCTA # Right flank : TATTGCTAAATAAGCTAAAAAACTGAACTCATATGTTCAGTTTTTTTGTATACTAACTTTTTGTATTCACTCGATAAGAGAAAATATAGGCTATAACAGCAATAATGCCAAATATAAGAGATAGAAAAAACATTGTCTGATAGGCGCAATTTACTGAAATTATTTGATCTAGAGTTAGGTTGATTAATATTCCTGATAATACGCTTCCAAATGCACCTCCAATTTGCTGTATCACACGAGTGATAGCACTTGTATCCTTAATCTGATTTTTTTCACAAAACTCAAATGGAGAAGAGAGAACAGCAATCGTAGCAACACCTAATCCGGAGCCTCGAACAGTAAAACCGATGATTTCAGAGGCGTTTCCACCTACTTGAATTATTAATATACTTATTGCTGATATTATTAGACCTATACCAATAATTAGAAATGAATTTATCTCACTTAAAGATTTATAAATAAATTTTCTCGCCAACCAAGCTCCTACACCTTGTAAGGCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAACGCCGTATAGGTGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 526210-525764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQA010000002.1 Gilliamella sp. B14384G10 NODE_2_length_898651_cov_188.856042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 526209 28 100.0 32 ............................ AACCGACCCAAACTATTATATTAAAAAATTAG 526149 28 100.0 32 ............................ ATTGCAATGCATACATTGCTGTCGTATTTGCT 526089 28 100.0 32 ............................ GTTATTATTAATAACCGTAGAATAATGTTTCT 526029 28 100.0 32 ............................ TCCAACACCACGAACTGTGGCGCTAAATTTAC 525969 28 100.0 32 ............................ ACTCAGGAAATGTTTTTATTAAAGATGCGTTT 525909 28 100.0 32 ............................ TATAAATATGACAATACAGAAACTGATTTTAG 525849 28 100.0 32 ............................ ATAAACAACTCTAGTACAAGACTCAATCCAAC 525789 26 82.1 0 ..........T........--.G.C... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 97.8 32 GTTCACTACCGTGTAGGTAGTTTAGAAA # Left flank : CAGTTTCGCTCTAAATATAAAAGTTTATTTCTAGAAAATCAGATTGGAGTGCTTCATTTAGCGACATGAGCAATGTGCTGACAACTGAGAGAGGTTAGCATGGCAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATCACAGCCGGTGGGTTGAGAGCGAACGAAGGCGGAAGGCAGTCACGCAGTGACCATTTGCGTAGTCGCCGCGAGAGTTGGTAAAGAGGGTTCGCGCAAACCCTCTTTACTCGGACGTAAACGCCATATAGAACTAGCTACCAAACAACAAAACGTCCGAAACTAAAAGAACTAAAAAAGTTGAGGAACGGGGTTTTTTGAAACTTAAATTTGTACCCATTTCCAACCCTTTTTTTGACTTAAAATAAAATTATTAAAAATCAAAACATTAAGAAGTTACTCAAAAAAAGGGTTTTTAATAGTAAAATTACGCTTTGTCTTTTTGCCAACTGCATTTATAGTATGTTGTGTTCTA # Right flank : AGTCTTAACAATTATTTACCAATCTGAATTTGCTATAATTACCTAATATATCTATACTTTTTTCTGCAAGGATTGCATATTTTTAGATAAAAATTATAAATTAAAGGATTAAGAGCATGTTGAGATACCCTTATTTAGGCGCTATTTCTAATTTAATTGTTAATGCAACATTGACCAATAAAGAAAATATATCGAGTCACGGCCCTTCAATACAGCAATTATTCATTAATCAGCCAATAAAGCGAAATTCAACGTTTAATAAAACACTACTCAAATATTCATCCTCATTTGGCCAAACAATAGTGAAATTCTTGAAAAAGATTTGTTTATGTTCTATGGCTTTTTCAACTATATTTAGCCCTGTATACGCGTTAAGTTCATTTACCACAGAAAGTATAAAAGGTAGTGCACCATATTTAACGCTAGATGATGGTGTTAGTAAAATAACGAGTACAGAAGAGCTACTGGCAATTAAATTACCTAATGGTACTGTGATAACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 533505-532996 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQA010000002.1 Gilliamella sp. B14384G10 NODE_2_length_898651_cov_188.856042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 533504 28 100.0 32 ............................ AAATCCGACACGAGCTGCAACACCGAAACCCA 533444 28 100.0 32 ............................ CAGATGAAAAATTCAGAGTGATCGCCATTTAT 533384 28 100.0 32 ............................ ATACCAGACCCAACCGTTAACATCCCGTTATC 533324 28 100.0 32 ............................ ATTCAGTCGCTTGGCGCGGTAATCGGTGAAGT 533264 28 100.0 32 ............................ TCAGGTGGCATGCATATAGTAGTCGTTGAGCC 533204 28 100.0 32 ............................ ACACACCATTAGGAATAGGAATAGGTGTTGGT 533144 28 100.0 33 ............................ ATAACTCTCTAATAACATTTTTTCCTTTTTTTT 533083 28 100.0 32 ............................ GCTGAGACCATGAATTACCGCCCATGCGCATA 533023 27 92.9 0 ........................-..T | A [533003] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : TCCATATATTACCTAAACCCACAGCAGAACCGGCAGCAGCAAGCATAAATCCCATGCGAGAGCTCCACTGTGAATGACTTTTCTTCATAGTACCTGTACTCATGAATCTATTTTCCCTAGAGTTTTGATTAAATATTTAATTTTAGTATCAGCAAAAGCCTAACTATTTTTTTATTAGATAAATAAAATGCTAAATCATGCCATGAAATAAATTTATAAACAAGAAAACATTATCATTTATAACGATAACCAATAAAAAATTAAATCGTTAACCTTAAGTTTAATCGTGTTTTGAAGTGGCCAGAGTAAAAAACGAGCAATAAAAAGTTGAGGAGTGACGTTTTTGGCGATTACATTTAGACTATTGCAACCCTTTTTTTTACTTAAAATAAAATAATTTAAAAATCAATATGTTGAAAAATGGCTCCAAAAAAGGGTTTTTATTAGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCTGGCTCTA # Right flank : TTTTTAGTCGTTACATTATTTTGACGAAAGAGATTAAAAATCATGTCAAATATGCCTTTTTGACAAGGCTATGTATATTCTAATACAAATAATAGATAATGTATAAATACTTAACGTGAATGAACTAGTCATGTAATGACTAACTAGTTTCGCTGTCGATGGCAAAAATTAGTGTGTGTAACCCCTTATTCGAAAATATCCTTTGTACTAAAATCCCCTCAGAAATTATTTAAACCTCTAAACGTTAGTGAGCTAAAACAATTCAATATGACAAAAAGTTGAGAAAAAGGGAGCATGAAATCTTTGATATTGATAATCATCAGCCCATCGCATATATTACATAGAATATTTACTTCTCTAAAAAGAATAGTCATGACACAAAACATCGATTTGAACGAAATAGATAAGTTTGCAAAACTTGCTTCGCAATGGTGGGATCCCAACGGCCAATGCAAACCATTACATATTATTAATCCATTACGAGTAGATTATATAAAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 862933-861524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFQA010000002.1 Gilliamella sp. B14384G10 NODE_2_length_898651_cov_188.856042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 862932 28 100.0 32 ............................ ACCAGCGCCCAGCAAATGAGAATTACGCATTG 862872 28 100.0 32 ............................ GTCATGGGCAAAATACGCAACTGGCGTTTGAT 862812 28 100.0 32 ............................ TGAATGTGGTCAAAAAGCCATCATCACCAAAA 862752 28 100.0 32 ............................ GATACAACCGTGAGGGTAAGGCGGTCGGTTTT 862692 28 100.0 32 ............................ AACTTAAGGGAAACACCCCGCTAGCCAAAGAA 862632 28 100.0 32 ............................ TTAACCGCCCCCAGTCTTTGTATAATTGATCC 862572 28 100.0 32 ............................ TGCATCGGCTGCGGCAAGCACTGGGGCGATTG 862512 28 100.0 32 ............................ AAAACGCAACAGGAGGGATTAGGCGTTACTCA 862452 28 100.0 32 ............................ ACGGGCAATAAATCCGCGGTTAAACCGAGTAC 862392 28 100.0 32 ............................ AAAAACATAAAATCATATATCAAACAGGTAAC 862332 28 100.0 33 ............................ CGCAAGGGCGGCTTGCTTAAAACTGTTTGCCTA 862271 28 100.0 32 ............................ TCTGGTCGCTTTGTGAGCGAGAGACGCCAGTT 862211 28 100.0 32 ............................ AAACTTTATGGTTATATCGTAAACGCTACTAT 862151 28 100.0 32 ............................ TTCGTTGCGCCAATATTTATTTTCGAACTGTT 862091 28 100.0 32 ............................ TACTAAGAGCCGAAAACGCCGCATTGACAAAT 862031 28 100.0 32 ............................ AACTAAATAAATCCGTTAGATTGGTACTACTC 861971 28 100.0 32 ............................ ATTAAAGCCAATGCGAAGCATATCTAGTGCGA 861911 28 100.0 32 ............................ TGCGCGCTCTCGCATGCGTCTAATGTTATCGC 861851 28 100.0 33 ............................ GCAATTTATTAAATAGTTAACGGATTTTTACAA 861790 28 100.0 32 ............................ CTAACCCCATTTTCGTTTGGTGTATTGTTTGG 861730 28 100.0 32 ............................ ACCGTAGTCTGATATTCTCTGTTATAACGTGA 861670 28 100.0 32 ............................ TGCATTAATCATTGCTGGATTGATGCCGTTTT 861610 28 100.0 32 ............................ AAAATCGAGCGGTTTTTTATTTTTAATTTCGA 861550 27 92.9 0 ....................A...-... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.7 32 GTTCACTGCCGTGTAGGTAGTTTAGAAA # Left flank : AATCAGCTAGTGACAATAATAAAAGTTTATTTTTATCAATCAGTTCGGTAAATTTTATCTAGCGACATGAGCAATGAGCTGACAACTGAGTGAGGTTAGCATGACAAACAGGGATGTTTGGCAAGGCTGTGTTTTGTCAGGAACAAATACAGCCGATGCGTTAACAGCGAACGAAGGCGGAAGGCAGTCACATCGTGACCACTTGCGTGGTCGCCGCGGGAGTGGGTAAAGAGGGTTCTCACCAACCCTCTTAACTCGGACGTAATCGCCGTATAGGAATAGCCACCAAACAACAAAACGTCCGAAACTCAAAGAATAAAAAAATTTGAGGAACGGGGTTTTTGAAGACTAAAATCCATCCCATCACTAACCCTTTTTTTTGACTTAAGATAAAATATTTAAAAATCAATAGGTTGAAAAATGGCTCAAAAAAAGGGTTTTTTTTGGTAAAAATAGACTTTGCCTTTTTGCCAACAACATTTATAGTATATCGGGTTCTA # Right flank : TTAGTTAAAGTTATAACGCTCGAAATCCACCAAACTAGAAACGTTTAGCAAAGGAGTTTTTTAAGGTGAATAAACTTATCACATGCTATAATCGTTTTCACTCATAATTAAACTTTACACCTATTGTGAATAATAATTCAATTGACAACAAACTAAATGAAAAAATGGTGCTTATTTTCAAAGCACTCTCTGATCCAGTTAGAATTGAAATAATTAAATACTTAAAAAACATAAGAACTGAGGTCATTTGTGGTGAAATAGGCCAAGCGGTTGGTATCAGTAAACCTTCGGGAACTTATCATTTTAGGTTATTACAACAAGCTGAATTAATTAATGTAAGAAAAAGTGCTAGAGAAAAATATATAGGACTGAATAAATCAACATTTGATAAATATGTTACAGGCTTTTTTGATAGTCTTTAATATATTTAAATGTTGATTTAATCTTGAGTTTACTACTGGATGTTTATTAACTATTATAATTTGCGCCTTGTCGTTAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGTAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //