Array 1 188979-192176 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGUZ010000005.1 Klebsiella pneumoniae strain 5012STDY7312737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188979 29 100.0 32 ............................. GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 189040 29 100.0 32 ............................. ATCTATTCCAGCATCGAGCTGCACCCGCAATT 189101 29 100.0 32 ............................. GTGGTTCGGGCGGCTCCGCGCAAAACCACGCA 189162 29 100.0 32 ............................. CACCGCGTTGCTGTTCCCGCCGGTCGCCGCCG 189223 29 100.0 32 ............................. ATATCGCCGTCGCAGTGGTAGAATCGGTCTTG 189284 29 100.0 32 ............................. CCCGGAGGAAACGTGGCAACAGTTCAATACCC 189345 29 100.0 32 ............................. AACGGAATTCAGTGGAGAGATGGGAAAGGTAG 189406 29 100.0 32 ............................. AGGACGGCGAGCTGATCGCCGGACACGGTCGA 189467 29 100.0 32 ............................. GGATACAAATCCAAACAGCGAGCCATTTTCCT 189528 29 100.0 32 ............................. TTTATCGGACCGGGCGCGGACACGCAGACAAC 189589 29 100.0 32 ............................. GCGGGTTAGTTATCCATGGTGCATAGGGGCGA 189650 29 100.0 32 ............................. TCACTTGATAGTTTATCTCGCCGCCGTGGCGC 189711 29 100.0 32 ............................. GTGCGGAACAAACCAGTAGGTGTCCAGGTCGT 189772 29 96.6 32 ............................T TTTTTTGACGCGTTCGGACTTCAGGTAATATT 189833 29 100.0 32 ............................. GGTTTACCAGCGGTAAAACAGCAGGAAGGAGA 189894 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 189955 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 190016 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 190077 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 190138 29 100.0 32 ............................. CGTTTAACGCAGTGCGAAAAATTACGACACCA 190199 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 190260 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 190321 29 100.0 32 ............................. CTCGGTGACCGGCAGATCGTTTTGAAACACAT 190382 29 100.0 32 ............................. CGTCTGGCGAGGTTTACGACGAGCTGACGTTC 190443 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 190504 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 190565 29 100.0 32 ............................. CCAATTCATTAAAATACTCTGCAAGTATATCG 190626 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 190687 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 190748 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 190809 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 190870 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 190931 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 190992 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 191053 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 191114 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 191175 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 191236 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 191297 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 191358 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 191419 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 191480 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 191541 29 100.0 32 ............................. AACGTAATTGGCTTACGGGGCGGTCGGCACAA 191602 29 100.0 32 ............................. TCGCCGCCTGTTTTTGTCTCTTTCCGGGTGAG 191663 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 191724 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 191785 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 191846 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 191907 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 191968 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 192029 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 192090 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 192148 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTATTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6387-7022 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGUZ010000065.1 Klebsiella pneumoniae strain 5012STDY7312737, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6387 29 93.1 32 ............TG............... TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6448 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6509 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6570 29 100.0 32 ............................. CGAAAACGGCAACCTTCATAAAAACGTCTTTT 6631 29 100.0 32 ............................. CAGCGTCTGAACGGACGAAACATCCCTGTTGA 6692 28 89.7 32 ..........-.TC............... ATGGGCTGGCGCGACTCAAATGCCCGTTTGGC 6752 28 93.1 32 ..........-.T................ CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 6812 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 6873 29 89.7 32 ............TGA.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 6934 29 100.0 32 ............................. CACTACCAGATCCGAATGGACACCCGTAATGA 6995 28 93.1 0 ......................-.....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.6 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATACCGCGAGGTATGGGGCGAAGCGTTGACAGGGGTGTTGACAGGCCAGCCATTGAGCCACGAAATGTATATTAAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //