Array 1 31596-31328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFEB010000009.1 Escherichia marmotae strain EC237 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31595 28 100.0 32 ............................ ACACCCTAAGCCCCAGCGCGCTTTCATCAGAC 31535 28 100.0 32 ............................ AGAAGAAGCGGCGGGCAAACGACGTCAGCCAC 31475 28 100.0 32 ............................ CGGTAGAAATCAAAGTGAAATCTGAGTCGGCA 31415 28 100.0 32 ............................ TGTTTGAGAACCTTCGCCGCATGGGGCATCAG 31355 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACTACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGATTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGCCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGCCCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATCTTGACGTCTCGAAAAAGGGTATGAACCTATGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46701-45350 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFEB010000009.1 Escherichia marmotae strain EC237 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46700 28 100.0 32 ............................ TGAATCCGCGCGCAAAAGCCAGCGTCAAGAGT 46640 28 100.0 32 ............................ ACCGCGCTGGCTGCAAATATCGTGGAAAAATT 46580 28 100.0 32 ............................ CACGTAGCAATTCCCATCGGTGACGAGTTAAA 46520 28 100.0 33 ............................ GTTATTATCTGCCTGATGATGATGATACAGAGC 46459 28 100.0 32 ............................ AAGCGCCCCTGCGGATCTACGCCCATGTCATC 46399 28 100.0 32 ............................ AATATGCCACGACATTATTTATATCAAAGCAA 46339 28 100.0 32 ............................ CGCGAGCGCAACAATTCAAATTCGCGTCATGC 46279 28 100.0 32 ............................ AGTCTGCTATTTCTGGACTATCCGCAGATGAA 46219 28 100.0 33 ............................ GCCCGCATGATGGCGCGCCTGGCTAACCTTAAC 46158 28 100.0 32 ............................ ATCCCCGGAAGCGGGCTCATAGCTCGGGGGGA 46098 28 100.0 32 ............................ ACCGGCTCGCCGAGTCCGTTTGCGTACACCCC 46038 28 100.0 32 ............................ GATAACCGCACGATCCGCCGCTGGATTGAAAA 45978 28 100.0 32 ............................ ACATCGCGTAGGCGTAAACCAGCTCTTTGCAG 45918 28 100.0 32 ............................ CCATGAATCAAGGCAGGCGGACACCTTCGGCG 45858 28 100.0 32 ............................ ATGAAGTTCCAGATTGATCCAGAGGATATGGA 45798 28 100.0 32 ............................ TTAATTGGCCTGCCGTCGGGGAAAACCTGCCG 45738 28 100.0 32 ............................ GTACACACCATAATCAATACCCTTTGATGACT 45678 28 100.0 32 ............................ TGGCATTTCCCGCAGTTTTGCTGAACTGGCAA 45618 28 100.0 32 ............................ CGCGTCATCTGTCTGACCAGTTTCAGTAGCTC 45558 28 100.0 32 ............................ CTGAACGAACTGAAGCGCCAACAGCTTGCAGC 45498 28 100.0 32 ............................ TGCGGTTCTGCGGGCGTAGCGGGCGGCGAGCC 45438 28 100.0 32 ............................ TTCAATAGTGTCCGCAATATCGTCAACGGTAA 45378 28 92.9 0 ....................T...C... | C [45355] ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAAACCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //