Array 1 1-247 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000720.1 Kitasatospora sp. MY 5-36 Contig_733_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================= ================== 1 31 100.0 41 ............................... AGCCTCGACTCCGCCGCGCCCTGGCCCGACATCGTCCGGTC 73 31 96.8 41 .............T................. AGCCTGTACGCCCGCCAGTCATCAGCGCGCACCGACGGGTC 145 31 96.8 41 .......G....................... AGCGCCACAGTGGCTTCCATCGGCACTCTCCCTCCCCAGTC 217 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ========================================= ================== 4 31 98.4 41 GCTCCGCACCATCCCGGTGCGGCACCATCGC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTCCGCACCATCCCGGTGCGGCACCATCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 15121-15393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000129.1 Kitasatospora sp. MY 5-36 Contig_132_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15121 28 100.0 34 ............................ GGCGATAGAGCCGTTCCAGTTGGACATCCGGAAG 15183 28 100.0 33 ............................ CCGCAAGCAGCTGACCGCCGCGGCCGCGGCGTA 15244 28 100.0 33 ............................ CGCGATCATGTCCCGAGGCGAGAGCGGTGTCTG 15305 28 100.0 33 ............................ CAGAACGGTCACGGTCGACACCGGGGCCGAGGG 15366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 5 28 100.0 34 GTCGGCCCCGCGCTCGCGGGGATAACTC # Left flank : GGATCCGACTATCCGTTGCCGTATAAGCGGCGGGACGCATCGGTCCTGCGTCGCATCGCGCTCGCCGACCCGTCCACGAAGAACACGGCCGTGGCGGCGAACGACCGCACGATCACGATGGAGGTCTCCTGGAGCGGCTGCGACTACAAGCCCGACCTGGTGGCACGGGAAACGGACAAGCAGGTCGCACTGCTGCTCAAGCGCCGCGACGCCTCGGGCCCGAACATCGGCTGCGAGGACGGCGGCATCGCCGAGCTGACGGTCGTCCTGCGTCAGCCACTCCGCCCCCGCTCCCTGACCGACGTCCTCACCGGCGAACCCGTCCCCTACACCCACGCCTGACAACAGCCCGTACCACGCCTTCGAAGGCTCAGAGCCGGCTTGCCAGGGCGCACCTCGGAAAGACGGCCTCCGGGACACCGGCCCCGCGCCCGCGGAGCTCCGAAACCGAACTGAATGAATTGGCGCGCTCTGATCCCAATCACAGCAGGTCAGGAAGT # Right flank : CAACCTCCATCCCAGCTGGGGGAAAGAACGCTCACTTGCCCCAACGGTGCTACCGGCCCGTCGATGATCATCGGGGATCCCGGCACCGCCTCGACCTTGACCAGCGATCGGCCGCGCTGGTGGCGGTGTCAGTCCCCCGTGTCACCGTGTGACCCATGATCAACAATCTGGAGGGCCTCGACCGCGTCGACTGGTCGTCGATGGGCCACGCCTATGGTCCGGCTGACGAAGTACCGCTGTGGCTGGAGCAGATGGCCTCGCCGGACCCGAACGTCCGGGAGCGGGCCTTCAGCCGCTTCTACAGCTCGGCCCACCATCAGGGCGACGTCTACTCGTGCACGGCGGCGAGCCTTCCGTTCCTGTTCGCGCTCGCCAACGACCCGCAGGTGCCCGACCGCGCAGCTGTCATCCGGCTCATGCTCAGCATCGGCAGCGCGGCGCTGGACTGCGACCCCGACGGCGTCTACTACAGTCCGTCCGGCCACGCGTCGACGCCCCAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATAACTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 5546-6155 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000214.1 Kitasatospora sp. MY 5-36 Contig_218_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5546 29 93.1 34 .................A.C......... CCGGACTGGCCTGGGGCACCCCGGGCACCACGGG 5609 29 100.0 36 ............................. GCTGGCGGCCTGGGAGGCCGACCTCGCCCGACTCGC 5674 29 100.0 35 ............................. GGCCGCGTGGTGCACGTCATGGAGTTGGTCCGTAC 5738 29 100.0 34 ............................. GCTGGCTACTCGCCAAGGGCCTGCCCCAGCGCGC 5801 29 100.0 37 ............................. CCGGCTACCGCGCCCGCTACCAACTCCAGGTCCCCGT 5867 29 100.0 37 ............................. CCGGCCCAGCCCTCCGCCCCCGTCTACACCCCGGTCC 5933 29 100.0 34 ............................. ACGTGGCCGACCTCCAGGTGGCCGTGCGCGGCAT 5996 29 100.0 37 ............................. AATGGACGCGTCGGCCGGCCTCCGTAAGCTGACCGTC 6062 29 100.0 36 ............................. AGGTGACCGTGCCCGAGCCGCGCATCGAGGGCGTCG 6127 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.3 36 GTTGCAAGCCCTCCAGGGCTGATCACGAC # Left flank : CCCTTCTCCGACGGCTATCTGGACGGCGTCTTCTCCGTCGAGGCCGCCCAGCACTTCCGCGAACTGACCGGCTTCGCCCGCGAGTCCGCCCGCGTCCTGCGCCCCGGCGGCCGGCTCGTCGTCGCCACCTTCTTCACCGCCCCCGGCCCCGACGTCGCCGAACGCCTCAAGATCCTCCTCGCCAGCTTCGCCGACGGCCTCGACATCGCCCACCCCCTGGACGACTTCACCACCTCCCTCACCCGCACCGGCTTCACCGACATCACCACCGAATCCATCGGCGCCGACGTCTGGCCCGGCCTCGACCGCTACCTCACCGACGCCGTCCCCGCCGCCCACTGGACCCGCCACTTCCTCCCCGCCTGGCGCGACGGCCTCCTCGACTACCACGTCCTCACCGCCATCCGCATCTGACCGGCGGTGAGCGGCCCTGGGCCCGTGACGGGCCCAGGGCCGCTCACGACCCGGCAGGCGGCCGTCGGGCTGAAGACCCTCGGCAT # Right flank : CCCGAGGGTAAAGCCCAAGGTCAGCGCACCTACGGGCGTCGCCGTAGGCAGCGGAAGCGCGGCGACCGGCCGGTACTGCAGCGGCACTGGTCACAGGATCTCGCCCGGCCCGCCGAGGGTGGCGCCGAGTGTTGCTCTGTCGATCATGTCCGGGGAGCGGGCGGTGTAGGTGACGATGCTGTCGTAGCTGGGGTCGATCACGCTATTGAGGGTGTGGGTGAGGGCGCGGTACTGGGCGGCGGTGAGTTCGCCGTGGAAGACGCTGCGCTGGGTCCAGTGGAGGTACTTGCGGCAGGTTTTCAATACTTTCGGGTTGCGTTCGGCTGCGGTGTCGTAGACCAGGATGACGAACATCGGCGGCTACCACCAGGGCCGGAAGGGCTTGTACGGCGTGCCTTCCAGACACAGCCGGACGAGCTTGAGTGCTTCGAGGTGGATGAGCTCCTCGTAGCTGACCTTCCGCTTCAGCGTCCGGTGGTACACCGTCGTCGCGAGTTCCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGCCCTCCAGGGCTGATCACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 14567-14984 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000214.1 Kitasatospora sp. MY 5-36 Contig_218_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 14567 29 96.6 36 ....C........................ GCCTGTACCTCACCTACACGCAGACCGCGACCACCG 14632 29 96.6 35 ....C........................ GGGCCTCCTGGCAGGGAGAAGGGGGAGTCCGGGGA 14696 29 100.0 38 ............................. CGGAAGCACCTGCCCCGGGCGGAGCAGCACGTGACCGC 14763 29 100.0 36 ............................. GCGGCCTGCACGTGGGCGTGCTGACGGCGGGAGGGC 14828 29 100.0 35 ............................. GTCGACCCGTCCTCGCTGCGGGGCACCGTCTCCTA 14892 29 96.6 35 ..............C.............. CAGCAGCGTCAGGCGAGCACGACGACGATCAGGAG 14956 29 89.7 0 .......................C...TT | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.1 36 GTCGTAACCAGCCCTGGAGGGCTTGCAAC # Left flank : CGAGTACACGCCCCTCTTCCGCGGCGCCCCCAGAAACAGCGGCCCGGCCACCCCCACCGGCTTCAGCGGCTTCCCCCGCCACCCGCCGTCGTGCAGGGCCTGCGCCAGGGCCTCGTCCTGCCCACTGAGCAACCCGTACACCACACCCCGCGCCGCCCCGTGCACGTCCTCCCACCGCACACTCGACGCATCCGGCGTCACATCGACCCTCACCCGCACCAGACTCTCCCGACCCGCGTGCCGCAACCCGAACACGCCGCAAGCTAGTCGGGCGTGAACGATCGACACCGCATTCCTCACGATTTGGAGCAATAGCCAGCCATATGTGCTAGAGGCCCCGGCGTCACCGCCACCAGCCCCGCGACGGGAACAGCGTCCACCCGCAGAGGCAGCAGACCCAAAACGCCCTGACCTGCCACGATGCACTACCGCCGAGTCGCCGCAACAACATCGCCGAACGCAATCCGCACGCGCCGCTGGACCTGGTGCTTTACCCTCGG # Right flank : TGTCATGTTGTACTCGCCGGGCTCCGCCTCCAGAGCCGGCGGTGATCAGCCCTGGATAGTTCACAACCCGATGACCACAAGGCCGAAGTGGGCCATCGGGGTTGTAGAGATAGGTCCTGGAGGGTTCGCAACGGGGCGAGCGGGCTCACGGGGCTCTCCCCACCGGGGCGGCGATCAGCCTCGCAGGACACGACGTTGGTGGGCTCCAACAAAGGCCGCTAGCCTTGGCGGGCCGACACTCGTACGGTGCCGTCGTGGCGCTGGTCAGGTTCGTTCTCATCAGCCCTGGAGGGCTTGCAATGAGCGCGCCATAGAGTTGGTCGAGAGGCTGGCGGCGGTGAAGCCCTCGGGCGGACACCGCCGCTGGCCAACACGCTCATCCGAACCAGTCCCGACAGCTCCGCGACCAACGCTCAGGGTCGACGTAATCACCCATGAGCGGTGCCAGTCCACTCCGGGTGCCGCTGCTCCCGACCTTGCTTGCAGGTTGATTTCCTCGG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAACCAGCCCTGGAGGGCTTGCAAC # Alternate repeat : GTCGCAACCAGCCCTGGAGGGCTTGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4968-6461 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000025.1 Kitasatospora sp. MY 5-36 Contig_25_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4968 29 100.0 32 ............................. CCTTCTTCGACACCCAGTACACCCTCGGCGCC 5029 29 96.6 32 ............................T CCCATGGTCGTGTCCTCTCTGGGTGGCCGGGC 5090 29 100.0 32 ............................. GGTGCCAACATCTACGGCAGCCTCACCGGCCA 5151 29 100.0 32 ............................. CCCTGCTGCCCTCAGTGACGGACACGACGGTC 5212 29 100.0 32 ............................. CACCGTTCGCGTTTCGTACGGCGACCGCCTGA 5273 29 100.0 32 ............................. TTTGTGCAACGTAATGGGACAGGTAGGGGTTC 5334 29 96.6 32 ............................T CCCAGCCGGACGGGGTCGAGCCGCCCCAGACG 5395 29 100.0 32 ............................. GGCCGGACCAGGGTCGTCCCGCTCTGCGACGG 5456 29 96.6 32 ............................T GGCCGTCCGAACCCGGGCGCCGGTGGCGTACG 5517 29 100.0 32 ............................. CAGTCGGGGCGGTAGATCAGGCCGCGGGGGGA 5578 29 100.0 32 ............................. GACGCCGACGACGAGACCATCCGGCGCATCAC 5639 29 100.0 32 ............................. CAGCCCCTGTCCCGGGGCCTCGCCTCCTTGAT 5700 29 96.6 32 ............................G GCGAGCAGCAAAGCGAAACGGGCGGTCTACCA 5761 29 96.6 32 ............................G TTGGAAGCCGGCGAAGGCGCGGCCCGGTCCGC 5822 29 100.0 32 ............................. TGCCTGTGCCAGTCGGCGGGTCGGGACCTTCT 5883 29 100.0 32 ............................. TGAATCGGCCCTGAATCCGCCCTGGAAGGTGA 5944 29 100.0 32 ............................. TCCTCACCCTCGCCCACGAGCACGAGGGACTC 6005 29 100.0 33 ............................. AGCTTCTGGAGGGCCAGGTCCCGTCCGGCTTCG 6067 29 100.0 32 ............................. TGCTCGGCGTGGCTCCGGGCGGCGGCCGCGAG 6128 29 100.0 32 ............................. CGGCAGTCAGATGCCGGGGTTATCCACAGGTT 6189 29 100.0 32 ............................. ACCGTGAAGTCGAGGGCGAGCGCACGCATCGG 6250 29 96.6 32 ...................A......... CCGTTCGCGGACCAGAAGATCCCCGCGACCCC 6311 29 96.6 32 ............................G AAGCCCGCGGCCGTCCGGCCCGTGGCCGCCGT 6372 29 100.0 32 ............................. CGACCGAGATCCGGGGAGAGCACCTGCTCGCC 6433 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : CCGACCGCACCGGCCCCTACTCCTGGTGGTCCTACCGCGGCCGCGCCTTCGACAACGACTCCGGCTGGCGCATCGACCTCCAGGTCACCACCCCCACGCTGGCCGCCCGCGCCACCGACGCCCGCGTCGAGCGCGCCGACACCCACGCCGAGCGGTGGAGCGACCACGCCCCGGTCACCGTGGCCTACGACGTGGACAACTAACCGGCTTGTCCCCCCACTTGGACAGCCCAGAGGTGCCCCGGCGCGCGGTTGTACCGCGCACCGGGGCACCTCCTCACCCCGCCGTCCCCAAGCGTCTTCGACCCGGGAACCTCCACCGTGCCCCTGGTCAGCGTCAGCCCGCCTGCGAAGTCCCGCTCGCCACTTGCCATCCAGTCCACCATCACCACAAAGCCAGCCGGCTCCACCAACAACCCATGAGCTCCACTATGGATAGCCAACCGAATCGAACTGAATCAAATAGCGCTCGCTGAAGCGAATCACCGCAGGTCAGCAAGC # Right flank : CA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26-601 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000026.1 Kitasatospora sp. MY 5-36 Contig_26_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26 29 96.6 32 .....................A....... TACGTCGCCGGCGACCGTCAGGGCTGACCGAC 87 29 100.0 32 ............................. CGACCGAGATCCGGGGAGAGCACCTGCTCGCC 148 29 100.0 32 ............................. CCCCGAGCACCCCGATGCACCCCCTCCCCGAC 209 29 100.0 32 ............................. CGAGCTCGTGAAGTCCTACTACCCTCTCGATC 270 29 100.0 32 ............................. GCCCGTCCAGCCCCGGGTGACGCGGGGCCACT 331 29 100.0 32 ............................. TCCGACGGAGCGTGGATGTGGGCAATGCCACC 392 29 96.6 30 ....................A........ GACCTGGACCAGGTGGGCGGTCCGGCTCTG 451 29 100.0 32 ............................. TCGGGACGGTGGTGCCCGGTCAGGCCCGGGCG 512 29 96.6 32 ............................T CCGCCAGTTCATCGACCATGGATCCGGCCTGC 573 29 89.7 0 ..............A.....A...A.... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.0 32 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : CTGGCTGGACGAGCAGCTCCAGCGGG # Right flank : CACAGCACCCACGCTCGCCGACCAAGAGCGGCGCCTGGTCAATGGTGAGCGGGCCCGGACTGCGGCCGACGAAGTACGGTTGGCGGACCGGCTACAGGTACAGCCGGTGTCCTCGATCGTCGGGATCATCTCGGGCTGCTGGCCGCGCTGGTGGCTGTCCTCGCTGGGCTCCGCCTCTGAACTACCACGCCCCCGCTCGGCTTCGGCCGGGCGAGGGCGCGTTCGTCGTGTGGTCGGTCGGCAGCTAACCGAACGGCAACGTCGCGGTGCTGCGGGCGGTCAGGGTACGCGAGTAGTCGGCTGCCGAGGCCGTCAGGGCCCGGTAGTTGATCACCGGGTCACCTGCGGCGACCAGGGCGGTGGCGCACCCCAGGCACCACGGCCGAGGGGGGTCCACGTCCAGGTCCTCGATGACTGCATCCGCTGTGCAGCACTCGGCGCAGATCGGCATGCTGCCGCCCTCCTGCTCGCTCAGGCCCAGGTCGAGCCGCACTGGGTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4788-4577 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000026.1 Kitasatospora sp. MY 5-36 Contig_26_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4787 28 100.0 33 ............................ CGGAACCTTGCCAAGGTAAACGGCCGGGCAGTC 4726 28 100.0 33 ............................ CCCGGAGACGGAGCGCTTCGGCCGGGAGCTGTT 4665 28 96.4 33 .......................G.... TGCCGCCGGGCAGATGATTAAAACCGGCCTGGC 4604 28 89.3 0 .............AC........G.... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 33 GTCGGCCCCGCACGTGCGGGGATAGCTC # Left flank : GTCAAGACCCTCCTCAGCCCGGAGGGCACCGAGATGCCCGACGTCGAGAACGAACTCTGGGACGAACGCGTCGGCACCGTCCAAGGCGGCGTCAACTGGGCCGGCACCGAAGGCCCGCCGGTCCCCGCCGCCTCCGACCCGGGCATGGGCGACGACCACCTGGCCATCATCGGCCCGGAGTTCACTCGGGACACGAGCAGCCCATGACCGTCATCCTCCTCATCGCCGCCCCCGAAGGCCTCCGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAGCGCCGGTGTCTTCGTCGGCACCCCCAGCCGCCGCATCCGCGACCGCCTCTGGGACCTCCTCGCCACCCGCATCGGCGACGGCCAAGCCGTCCTCGTAGAGCCCGCCACCAACGAACAAGGCTGGACCGCCCGCACCGCAGGCAAGGACCGCTGGAAGCCCGTCGACTTCGACGGACTGATCCTCTCGGCCCGCTCCCGCCGATAGACCCGCAGGTCAAGAAGT # Right flank : CCATCGCGCCACCTCTCGGCTTTCCTTCGGAAAGGCCATGAGGTGGCGGTTTGTTGTAGTTGTAGGAGATATGACCGATCTGTCACCAGCCCTCGCCATGCACCTCAAGTCGCATGGCGATAGTCGCGCAGGACCTGCCCGCCTCGACGCGAGCGTGGATCCCGGGCGCGATCGAGCCGCACTTCACGACGGCGGCGAGAACGGGTCGATAGGCTGCGGATATGCGTTCCGTGGTGTTCGACATTGGCGAGACCCTGACCAGCGACACCAGGTACTGGGGTGATTGGGCCCGGTGGCTCGGCGTCCCCACTCACACGATGTCCGCGCTGGTCGGGTCCGTGCTGGCCGAGGGCCGCGATAACGCCGACGCGATCCGGATCATCAGGCCGGGCGTGGATGTGGCCGCCGAGTGGCGGGACCGGCAGGCGGCCGGACAGGGGGACTATCTCGACGAGTCAGACCTGTACGCGGACGTCCGTCCTGCGCTGGCCCGACTGCGC # Questionable array : NO Score: 2.68 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACGTGCGGGGATAGCTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 34-2373 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000027.1 Kitasatospora sp. MY 5-36 Contig_27_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34 29 100.0 32 ............................. CGGCTGGCGGACGCCGAGCACGTGCTGGACCA 95 29 100.0 33 ............................. GTCGACAGCTTCAGGTTCAGGGCGCCGGCGTTC 157 29 100.0 32 ............................. AGGCGGCAGACCCGCCGGTACAGCACGCTCGG 218 29 100.0 32 ............................. AGTGCCCCCGCCGACGAGACCGGGGCCTTCCG 279 29 100.0 32 ............................. GCCTCGGCGGCGGCCGTGGCCGAGGGGGCCTC 340 29 96.6 32 ............................G AGCGAGTTCTACGGCCTGGGCTCGGACGTCGT 401 29 100.0 32 ............................. CCCAACGACCAGCCCCATCAGGGGGCTTCGAC 462 29 100.0 32 ............................. GGCGTCATCCCCGCGCAGGCCGCCGCCGCCCT 523 29 96.6 32 ............................A GGACTCCTTCCCTTAGGTGAATCTTAAAACGC 584 29 100.0 26 ............................. TTCCGTCGCTCGCCGCGCGACAGCTT 639 29 96.6 32 ............................G GCGGAGTTCTACGCCCTCGGTACCCCGGCGCA 700 29 100.0 32 ............................. ACGGACACGGCGGAGGCCACCTCGGCCTGCCG 761 29 100.0 32 ............................. CGTGCGGGGCGGGGTGAACAGCGCGCCGCCCA 822 29 100.0 32 ............................. GGCTTCGACCGGATCCTGGGCGTCCTCATCCC 883 29 100.0 32 ............................. AGCCAGCGCGGCATCGAGGCGGGCCGGGCAAA 944 29 96.6 32 .....................C....... AGGCGCTCGTCCGGGCCAGGCTGGATCCCGAG 1005 29 100.0 32 ............................. TGCAGCTGCAGCCCGGCGAGTACGTGGAGCTC 1066 29 100.0 32 ............................. ATCGAGCAGTACTACGAGAGCGACTCCGGCGG 1127 29 96.6 32 ............................G GAGGACCCGCTCTCAGGCGTCGCGGATGACCA 1188 29 96.6 32 ...................A......... GGTCGACCTGGCCGGCCAGTCCCGTCTCGGCA 1249 29 100.0 32 ............................. CGCTACGTCGAGGCCTTCGGCACTCCGGCCGC 1310 29 96.6 32 ............................G AGGTGACCGCCGTGGCTGCCTCGTATCGCGAG 1371 29 100.0 32 ............................. GACACGCCCACCGGGAAGCGGCGTGGCTGCTG 1432 29 96.6 32 ............................G GGGTCCGCTCTCCCGCAGATCCGCGAGCTGGC 1493 29 100.0 32 ............................. GTCGAGATCAAGGCGTGGCGGACCAGCGGCTC 1554 29 96.6 32 ..................A.......... AGGCGGTGCGCGACTTCCGGCTCGCCCAGGAG 1615 29 100.0 32 ............................. GCGGCGACGGTGACCGTCGCGGACGCGCTGTA 1676 29 96.6 32 ............................G ATCACCGTGGATCCCGACCACGTCCCCTACTG 1737 29 100.0 32 ............................. CAGAAGAACGAGAGTGGAACGGGAGGGAACCA 1798 29 100.0 32 ............................. CGGTCGGGCGGACCGCAGTTCTATGTCGAGAC 1859 29 100.0 32 ............................. GGTGCCGCGACCATCACCCTGCTGTTCCTGAT 1920 29 100.0 32 ............................. CCAATGACCCTGCCGCACGAGGACTACATGGC 1981 29 100.0 31 ............................. TGGGGGTGTAGCTGAGGGGTTCGCGGTTGGA 2041 29 100.0 32 ............................. CCGAGCCACCCGCTGTGCGGCTGGGGCTGTTC 2102 29 100.0 32 ............................. GCGTCATGACCGCCGCCGAGGTCCGCACGCTG 2163 29 100.0 32 ............................. GTCGAGAAGGCGGACGAGCACGCCGCCGCGTC 2224 29 96.6 31 ......T...................... CGCTGTTCTGACCACCCACCCCCCAAGGACC 2284 29 96.6 32 ......................C...... GACCGATGTTCACCACCACCACCGACCGCCTG 2345 29 96.6 0 ..................C.......... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 98.9 32 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : TCAGCTGGTAGCGGGTGCGCACCCGGGTGCGCAG # Right flank : CCTGGCCTTACAGGCACTCGTAGAAGGAAGTCTTCGGCGTGCGTCGGCAGGCGGGTGTAGAGGTCGCGGTGCAGGCTCTCGGAAGCTGCCGGTCGAGAGCGCGTGTCGGGGCCGGGCGACATCCGCGCGGAACGGGGTTCGTACGGGCGGCGCTCGGCGCCGTGCGGGTGGGCCTGGCCGGTGGGGCGGGGTGCGGGGGGGCTCAGGTGCGGCGGTGGGCGAGGGTGGCGAGGTGCGACGCCACGGCGGTCGGGCGGGGCATCGCTGCGATTGCGGTGCTGAGCTCGCGGGTGGCGCGGGTCAGGTCGTCGTCGGCGAGGAGACGGTGGCACAGGGTCGGGGTGATCTGCTCGGCGGTCGCGCCGAGGTCGGTGGTGGCGTAGGTGCGTTGCGGCCGGCGGCCCCGGTCCGTCGTGGCGGTGGGGGGAATTCGTCCGGACTCCGCGGCGGGCTTCGGCCGGCGCGGGCAAGGCGGTGTCCAGGCGTCACACCTGCGGGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6238-7147 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000027.1 Kitasatospora sp. MY 5-36 Contig_27_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 6238 29 96.6 32 .....................A....... ATCAGGCGCCCTCCCCGATCCGGCCGATGAGG 6299 29 96.6 32 .....................A....... GTGTGGACGGGCCTCCGGCCCCGGAACGACTT 6360 29 93.1 32 .....................A......G GTCCTCTCCGACCGCCTCAAGCGTCTCCAACC 6421 29 96.6 33 .....................A....... CGGAAAATCGGTGCCGGGTTGCATAAGCCAACC 6483 29 100.0 32 ............................. TGCTTCCCGTACAGGTGACGGGCGCTCAGCCG 6544 29 100.0 32 ............................. CAGCAGGCCTCCGTGGGCTACAGCGCGTCCGC 6605 29 89.7 35 .......T.............A......G CGCCTCGGCGGCGGCGAGCCGGCGTTCGACGACGC 6669 29 100.0 32 ............................. ACCCTCCGCCTGACTACCACCTCGCCGCCCGG 6730 29 100.0 55 ............................. TGGTGGCCGCCGTCGGTCTGGAGACGGACGCGCAAGGCCGGGAGTTCACGTCGCA 6814 29 100.0 32 ............................. ACCTTCTTCTCCGAGCAGGTCATCACCGGGAA 6875 29 100.0 32 ............................. ATGGGCGGCGAAGGGGAGATCGAGGTAGACGT 6936 29 100.0 33 ............................. TCCCTGACGAACGACTGGCGGCCGGCCACGCCG 6998 29 100.0 32 ............................. TTCCCGGTGATGGTGTGGGATGTCTCGGTGGC 7059 29 96.6 32 ...A......................... GAGGCTGCGGGCCCGTCCTGTATGCCGCCCAG 7120 28 93.1 0 ............T....-........... | ========== ====== ====== ====== ============================= ======================================================= ================== 15 29 97.5 34 GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Left flank : CCGGTGCCGGGCGGGGTGGCTCAGGGGGTGGGGTGGGTGAGGGTGGTGAGGTGCTCCGCCACGGTGGTCGGGCTGGGCATCGCCGCGATTTCGGTGCTGACCTCGCGGGCGGCGCGGGTCAGGGTGTCGTCGGTGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCGCTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGCCGTCGGGCAGGACCAGCTGGGGGATGCCCGCATCGAGTGTGCCAAGGGTGGTGCTGCTGCCGCCTGGTACCACTGCCAGCGGTCATCGACCATGCCTCGACCTCCATGCCCGAGTACGCTTCGGAGCGTAGATCGAGGCACTGACAATCCACCCTGAATTCACGAAGAGACAACGATCGGCGCATGAGGTCTGCTCTGGGAAGCCAACCGAATCGAACTGAATCAACCAGCGCCAGTTGACGCAGATCACCGCAGGTCAGGAAGT # Right flank : CCCTGCATGGTAGGCCCGCGCAGAAGGGAGCCCCCCGGCGCGTGCCGGGGGGCTCTCATTGTGGCGTCTCGGTGCTGACCGAGTGGGCCCTGTCTCACGGCGGCCAACTGGTGTGGGGATCTCGGTGCAGGCTCTCGGGAGTTGCAGGGTGGGGTGGCTCAGGTGGTGGGGTGGGCGAGGGTGGTGAGGTGAGACGCCACGGTGGTCGGGCAGGGCATCGCCGCGATTTCGGTGCTGACCTCGCGGGCGGCGCGGGTCAGGGTGTCGTCGGAGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCGCTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGCCGTCGGGCAGGACCAGCTGGGGGATGCCCGCATCGAGTGTGCCAAGGGTGGTGCTGCTGCCGCCTGGTACCACTGCCAGCGGTCATCGACCATGCCTCGACCTCCATGCCCGAGTACGCTTCGGAGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Alternate repeat : GTCGGCCCCGCGCTCGCGGGGATTGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7785-9521 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000027.1 Kitasatospora sp. MY 5-36 Contig_27_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7785 29 100.0 32 ............................. CCGGTGACGATCTCCGTGTGCGAGCCGTTGCC 7846 29 100.0 32 ............................. GGCGTGCCCCTCCTTTGTTCCATTCAGTTGAT 7907 29 100.0 32 ............................. CTGGTGCACGCCCGCTTCACCGGCGGTGGACG 7968 29 96.6 32 ............................T CCCAGGCGGCACCGGGCGCCGGTATCCCCGGG 8029 29 100.0 32 ............................. CGCCTGGACACCGCCCCCGCCGTGGACGCCTT 8090 29 100.0 32 ............................. ATCAACCTCGGCACCGTGAACGGCGGCCAGAG 8151 29 100.0 32 ............................. TCGGCATGTCCCGTGCCGCCTTCTACCGGATG 8212 29 100.0 32 ............................. TACGCCCACTGGGAGGAGCAGGCGGGCGCCGC 8273 29 100.0 32 ............................. GGGGCTGAGTTTGCCGGCGCGGGCAAGCCGCG 8334 29 96.6 32 ............................G GGCTGGACGGTCTGGGTGTTGCCGTCGCCGAC 8395 29 100.0 32 ............................. GGGGGGTGCTCGGTGTTGTAGCGGCGCAGCCA 8456 29 100.0 32 ............................. AGACCATTCGCCAGTGGATCGACTCCGGCAAG 8517 29 100.0 32 ............................. CTGTTCACCGTCATCGCCCTGCCCCCGGGCAA 8578 29 96.6 32 ..........T.................. GAGTACAGTGCGCCCGGGTCGGCGCCGGGGTG 8639 29 100.0 32 ............................. CAGCCCCAGGCGTCCGGGTCGGCGGACCAGCG 8700 29 93.1 32 .....................G..A.... AGGACCTCGGTCGGTGAGATGGGCGAGGTTCG 8761 29 93.1 33 .....................G......G CGGCGCCGGGTCACAGGCCTTCGGTGTCGCCCG 8823 29 96.6 32 .....................G....... GGCTGTTCCGGTTCTGCGAGTTCATGAGCCAG 8884 29 93.1 32 ................T....G....... CATGGCGGCGGACCCAATGCCGCCCCCACCCC 8945 29 96.6 32 .....................G....... TCCAAGCTCCGCCAGACCAGCCCGGACGTGGA 9006 29 96.6 32 .....................G....... GCCAGGACGCCGTTCATGCGCAGCGCGGCGGA 9067 29 93.1 32 ...........A.........G....... TCGCGGAAGCCGTTGTTGAGGAAGTACAGGCC 9128 29 93.1 32 .....................G......T CCTCGACCGATCCCAGGCTCGTCCGGACGGGC 9189 29 96.6 32 .....................G....... AGGTCGATCACGGCGTTGATCGCGCTCTTGGC 9250 29 96.6 32 .....................G....... TCGGAGGCGAGGTGCTCGGGGTGGGGACAGGG 9311 29 96.6 32 .....................G....... CAGCTCATCACCGAGCGGCTCCAGCGCCGCGC 9372 29 96.6 32 .....................G....... TGCCACCACCAGGTCGCGGAGTGGTGCCGGCC 9433 29 93.1 32 .....................G...T... CCCAGTTCCCAGTCCGCAGCGCCGTACAGCAG 9494 28 93.1 0 ..............-......G....... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 97.2 32 GTCGGCCCCGCGCTCGCGGGGATTGCTCC # Left flank : GAGTTGCAGGGTGGGGTGGCTCAGGTGGTGGGGTGGGCGAGGGTGGTGAGGTGAGACGCCACGGTGGTCGGGCAGGGCATCGCCGCGATTTCGGTGCTGACCTCGCGGGCGGCGCGGGTCAGGGTGTCGTCGGAGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCGCTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGCCGTCGGGCAGGACCAGCTGGGGGATGCCCGCATCGAGTGTGCCAAGGGTGGTGCTGCTGCCGCCTGGTACCACTGCCAGCGGTCATCGACCATGCCTCGACCTCCATGCCCGAGTACGCTTCGGAGCGTAGATCGAGGCACTGACAATCCACCCTGAATTCACAAATAGACAACGATCGGCGCATGAGGTCTGCTCTGGGAAGCCAACCGAATCGAACTGAATCAACCAGCGCCAGTTGACGCAGATCACCGCAGGTCAGGAAGT # Right flank : CCCTGCATGGTAGGCCCGCGCAGAAGGGAGCCCCCCGGCGCGTGCCGGGGGGCTCTCATTGTGGCGTCTCGGTGCTGACCGAGTGGGCCCCTGTCGCACGGCGGCCAACTGGTGTGGGGATCTCGGGGCAGGCCCTCGAGAGTTGCCGAGTGGGGTGGCTCAGGGGGTGGGGTGGGTGAGGGTGGTGAGGTGCTCCGCCACGGTGGTCGGGCTGGGCATCGCCGCGATTTCGGTGCTGACCTCGCGGGCGGCGCGGGTCAGGGTGTCGTCGGTGAGGAGGCGGTGGAGCAGGGCCGGGGTGATCTCCTCGGCGGTCGCGCTGAGGCCGGCTCCGCGCTGGTGGACGGCGGCCGCGGTGATGAAGCGGTCGGAGCCGTCGGGCAGGACCAGCTGGGGGATGCCCGCGTCGAGTGCGCCGAGGGCGGTGCTGCTGCCGCCGTGGTGGATGGCGGCGGCGCAGGTCGACAGCAGGGCCCGCCACGGGACCCAGCCGTACGGGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCTCGCGGGGATTGCTCC # Alternate repeat : GTCGGCCCCGCGCTCGCGGGGGTTGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCTCGCGGGGGTTGCTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 369-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFVW01000004.1 Kitasatospora sp. MY 5-36 Contig_4_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 368 37 100.0 36 ..................................... GTGAAGGTTGGCCGCTCCGGTGCGAGGCCGGGCCCG 295 37 100.0 36 ..................................... ATCGGCTGGCGCGTCTGCAGCATGCTCGCCCACCTC 222 37 100.0 36 ..................................... TTCTGCCGCGTTCGCCGGCCAGTTCCGAGCCGGCCA 149 37 97.3 37 ...................A................. CTCGACGGCGGCTGGGACCTGACCGTCAACCAGCCAC 75 37 94.6 0 A.............C...................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.4 36 GTCGCTCCGCACCATCCCGGTGCGGCACCATCGCAGC # Left flank : CGGCACCTTCCGCCTCACCGCCAGCGGCCGCATCCAAGCCGCCACCAGTTGGGACACCACCGACAACCGCGGCGCCCTACGCTGGCCCGCCTGGACACCACCACTCACCACCACCGACGTGACCGTCCTCCTCGAACACCCCGCCGTCCGTGCCACCGAACCCGACACGAACCGCAATGTCAGAATGCTGACCAACCTCGGCGTCAGCGCCCTCTACACCGCACCCCGAACAGGCCTCAAACAATCCAACGGCCCCCTCGCCGCCAGCCGCCACCTCTGGCCCTGAACCCACCCCCGGCCACCCCTTTAACGCCCGCACCTTGACAACTCCACAGCGCCAACACCGAGAAAACCGTCCCGGCCGGACACGACTTCGGAACCACAAGCACACACGAGAACACCCCATCGCACCGAAGCGAGAAGTCCGAATCACCCCAAATGGCACCCACGTATGCACGGCAGCCAACCCGCCGAACCACCAGACCAGCAGCTCAACCGCC # Right flank : CGCGACGAGCAGTGCCTCGCGCTTCGTGTCGAATGTCGT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCGCACCATCCCGGTGCGGCACCATCGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //