Array 1 105433-104745 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWJJ010000004.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 105432 28 100.0 32 ............................ TCGTCTATATTTTCAAATTCTTCTCGAACCGC 105372 28 100.0 32 ............................ AGCAAACCACGCTCGGTAGTGAACTACGCATC 105312 28 100.0 32 ............................ AGGAAGGTGGTAAGAAGCAGATTGCGCTGACC 105252 28 100.0 32 ............................ GTTCAATTATCAAATATCACCCGCGATATGGT 105192 28 100.0 32 ............................ ACATTTAAACTAACAATTGGTGAGCCTGATAT 105132 28 100.0 32 ............................ TGAGCACGTCTGCCGCCGGGCGACCAACTGGC 105072 28 100.0 32 ............................ TTTCTGATGTACGGGCAGCCAGCGCGGATCCA 105012 28 100.0 32 ............................ GGTGCGAGCTCCTGCTCTTGTGACTGTGAAAC 104952 28 100.0 33 ............................ CCAGCTGGATGAACAAAGGCGAACCGCAAAAGC 104891 28 100.0 32 ............................ ACGAATGCGCTTACATCCTGGCAAAAGGGCGT 104831 28 100.0 31 ............................ AAAACATGGCGCTGGACCAGACCCGCAAGGT 104772 27 92.9 0 .......................C-... | T [104753] ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCTTTTTTGTGTAGGCCATGTCTGGTGCAAAAAAAAGCCCGTACTTTCGTACGAGCTCCTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGATTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGCCGGCTAAACCGACCTTTTACTCATTCTTTCTCTTCGTCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 115662-114489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABWJJ010000004.1 Escherichia coli isolate Fecal samples, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 115661 28 100.0 32 ............................ GCTGTAAATTGGCTGACCGTCGCAAAATGAGG 115601 28 100.0 32 ............................ GCGCGCTGAATTGCCAGAATCGTGGGCGCACA 115541 28 100.0 32 ............................ AGTTTTTTACCCCGCACCTCCATTTTCACATT 115481 28 100.0 33 ............................ AGGTCGCAACAAAATCCGGGTCAAACGATCCGT 115420 28 100.0 32 ............................ GTGAATCACGGCGCTTATTGCTGGCTGAAATG 115360 28 100.0 32 ............................ AGCTCAACGGTACGCGCCTGCTCGTCAATCGC 115300 28 100.0 32 ............................ AATACGCCCGACTTTTTGTGGCATTTCTGCTG 115240 28 100.0 32 ............................ TCCAGTGATTCGGCGGAGTCGCGCTGCTCAAT 115180 28 100.0 32 ............................ GTGGTAATACATCAACGACACCCGCGCGTCTT 115120 28 100.0 33 ............................ CGGCATATAGGGCGGCAGATTCCTCGGTCCGAT 115059 28 100.0 32 ............................ TGGCGGCGACGGACTACAACCGCCGCAACTCT 114999 28 100.0 32 ............................ AGTGCCAGTGCTGCGCATGCATCTGAAACCAA 114939 28 100.0 33 ............................ CGCAGACAACGGGCCGCGTCGCTACAACGTGCT 114878 28 100.0 32 ............................ TCGCCGAGATAACTGCGCACCTCGCGATCTGC 114818 28 100.0 32 ............................ GGCGAGCGGTCGGGGATCCCCTTATATAATTT 114758 28 100.0 32 ............................ GGCGCGCCCACCTCTTCCTCCAGCCCCGGGGC 114698 28 100.0 32 ............................ GGTACGCTCGGAACACAGCGGGCAGCACTAAC 114638 28 100.0 32 ............................ AACTGGCGCGACGTCCGGGGCAAACCTGGTGG 114578 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 114518 28 85.7 0 ....................T...C.CT | C,A [114492,114495] ========== ====== ====== ====== ============================ ================================= ================== 20 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGGCTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //