Array 1 465957-470082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYBP01000003.1 Geobacillus kaustophilus strain Et7/4 LG52.Contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 465957 37 100.0 33 ..................................... AAGTAACATGAAATTAAAAGATGATGACGAGAT 466027 37 100.0 36 ..................................... ACTTGGACGTGTTCATATATCTTCGCAAAAGCCGGA 466100 37 100.0 35 ..................................... AGGACATCGGGTGGGTTGACGAGGAAGGCGTGCGT 466172 37 100.0 36 ..................................... CAAGGTGATCCTGTACTATTTAAGTAAGTGTTTTGA 466245 37 100.0 36 ..................................... CGGTTCTTGGCGACAATGACGTCAATGGTGTTTTGT 466318 37 100.0 38 ..................................... TTACGAACCGCTGTTTCAAACGCTCAAAGAAAAGGGTA 466393 37 100.0 35 ..................................... AAGACGATTTCATCATCAATCAACACGGCGGCTAT 466465 37 100.0 35 ..................................... AAGGATACGAAGTAAGGGAATACTTGCTTGAAAAG 466537 37 100.0 34 ..................................... CACCAAAAGGAACGCCCTACAGGGCAGTCGGGTC 466608 37 100.0 33 ..................................... GGGATTGAACAAATGATTGACGAGGGGAAGAAG 466678 37 100.0 33 ..................................... TCTCTGTGGTTATAATGATTGAGAGGAGGTTTA 466748 37 100.0 34 ..................................... CAACAAAGATACTCGAAAATCCAAGTCCAACAAA 466819 37 100.0 34 ..................................... ATTTCTCCCTCAACCTTTGTTGTATGGTTTGCAT 466890 37 100.0 34 ..................................... CCGACAGGAAAGTGAGGAACGAAAATGCAAGCAG 466961 37 100.0 33 ..................................... AGGAATTCTTCGGCGCTGTCGCCCATAAGCCTT 467031 37 100.0 34 ..................................... ACGGTCGGTTGCGCCTTCTTTGACCGGCCTGTCA 467102 37 100.0 34 ..................................... TGGGTCAAGTGAATAAACCGTTGCAATCGTCTCC 467173 37 100.0 34 ..................................... TTTGAGGCGCTCGTACAGAACTTGCTTTGGATAT 467244 37 100.0 37 ..................................... AAAGTTGATTTTGATAATGAGGATATTGAGGATATAG 467318 37 100.0 37 ..................................... AGCAGAAGACGAAACAACAAAATGATTACGGGGAAGA 467392 37 100.0 34 ..................................... ATCAGCGTAATCGCCTGGCGGAAAACGGCTGAAA 467463 37 100.0 33 ..................................... AGTTCTTTGATAACGCGAACGACGCCACGCCGG 467533 37 100.0 34 ..................................... AGCATTCAACGGATCGAGTGAATTGAACGGGCTG 467604 37 100.0 36 ..................................... CAGATGAGTATCTGATGGGTGCGCAGGGTGTCATCC 467677 37 100.0 34 ..................................... ACTGCGTTCCGGCCGCGCAAGCGCGGTGCGTCGC 467748 37 100.0 33 ..................................... TTTGTATTTCTTGAAGTACAATTTTTGTATTTC 467818 37 100.0 36 ..................................... AACGTTCAGCAGAAAAACACGGATCAAATCACGGTT 467891 37 100.0 34 ..................................... AGGTGCAGGATCTCCTTTGATCTTTGGCAACCCT 467962 37 100.0 34 ..................................... ATTCTCTTGCTGTCTTGGCGATCGGGTGGCTTCC 468033 37 100.0 35 ..................................... TGCTTTTGCGGCTCCTATTGCTCGTGTCGTTGCCG 468105 37 100.0 35 ..................................... GATTGGTATTTTGATGTCTTAGGTTGCTCAGGTGG 468177 37 100.0 36 ..................................... ACGACAAACCATAAACCAATCATCAAGGGAGATGAC 468250 37 100.0 34 ..................................... TCCTTTCCGGTCAGAATAGAAATCGCCCGGCTGG 468321 37 100.0 34 ..................................... CTGTTCGAGAATAGATAGAAAGGATGACGCAGAT 468392 37 100.0 34 ..................................... TACTCGATTTCCGTATTCACATTGTATCGATAAG 468463 37 100.0 42 ..................................... CATATTTAAAGCAGTGGTTGTTTTTCTTTTTGATGATTTGTT 468542 37 100.0 33 ..................................... TGGTTATTGGTGAGGTCAAATTGACCTCATGGA 468612 37 100.0 34 ..................................... GCGTTTTCTCGCCCCTCGTTTCTGCGCGGATAAT 468683 37 100.0 35 ..................................... CACAAAAATAAAAAAATCCCTGCCAAAAGGCAGGG 468755 37 100.0 35 ..................................... CCATCATAGTAAGCGTAAGGAGCGCTGGTAAAGGT 468827 37 100.0 35 ..................................... ATTTTGTTGGTGTGCCATTAGCGGTCAACTCTTTT 468899 37 100.0 34 ..................................... CATGCCTACACGCTTTCTGTCATCGCATACAATA 468970 37 100.0 36 ..................................... AATCCCTCTGCCGCCGATCACTTGGAACGTCTTCGC 469043 37 100.0 36 ..................................... CTGAAAAAAAGCCGATTGTCTTTATTGACTACCTCA 469116 37 100.0 34 ..................................... TGGGTCAAGTGAATAAACCGTTGCAATCGTCTCC 469187 37 100.0 34 ..................................... ACGTTAAGCGTCATCGGATTTTGCTTTGCTTGAA 469258 37 100.0 35 ..................................... CTAGACGATTGCGCCATGAGCAAGAGCAGAGCGGC 469330 37 100.0 35 ..................................... GAGTAAGCAAACTGGTACGTGATGAACGGCGGCGT 469402 37 100.0 34 ..................................... TCGAATTTGGCCATGCCAAAGTAAATGGCGGACG 469473 37 100.0 35 ..................................... AAGTACATCCTCCTTTTCATCAAGAAAAAAATATT 469545 37 100.0 37 ..................................... AAAATTAGCCGACCTCGCAGTAACCGCGCAAAAACTG 469619 37 100.0 33 ..................................... AAGTCGTTTGGATTCATGAAATTTTCCATGATC 469689 37 100.0 34 ..................................... TGACAAATCGTGATACGGATTTCGCAACTTCATC 469760 37 100.0 36 ..................................... AAATTTTTATTCTAAAAACTCAATAACTACGAATGA 469833 37 100.0 34 ..................................... AATCACGGCACGCACAACGTTTTTGCCGCCGATT 469904 37 100.0 34 ..................................... CGGGATACGGCCAAAGAATTGAAGATGAAACCAA 469975 37 100.0 34 ..................................... ATTTGCAAGGCGGACGAAGATGAGAACGGCGAAG 470046 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 58 37 100.0 35 GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Left flank : CATTATTGGATATTTTAGTGACATACGATGTGGAGACATTGGAACCCAGCGGCCAAAAACGATTGCGGAAAGTGGCGACCATTTGCCAAAATTTTGGCCAGCGGGTGCAAAAGTCGGTTTTCGAGTGCAACGTCAATCAGGCTCAATTGGAAGAGATGGAGCATCAATTATTGCGTGTCATTGATTTGGAAAAAGATAGTTTGCGGATATATATGTTGTACGGTGACCGGTCAAAGGCAGTTCGCGTCTATGGAAAAGATCATTACATCGATTATAATGATCCGATCATTTTGTAGAAATGAGGAACAGCAATATTACAACGTGCGAACATAAAGCAATGGCGGAAACCTAGGGGAGATCGCGATGAGAGGAAAAGCTTGCAATAATGCGGAAAATAGAAAATGGACCAGCGCATGTCCTATCTTTGATACAAGTAAAATGTACAAATTCGCGTTTCTATGTCTTGAAATCCGCTTAGCGCAAGACATCTAAACGCGGGC # Right flank : CATCTAACGATACCAGGCGTGTTGATTATCCAATAAAATCCAAAGGGTATAGAAAAAAGAGCACCTTTCCTGTAGAATGTGAGTAGCGACACAAACAAACCCAGGAGGTGCTCTCTATGAACAAGCATACCACACTCCCGAATTTGATGCAAAAACTTGTTTCGGATGAAGAGATTCAACTGATTGCCGAAGCGGTTGGGTATCGTGATTCGTCTCGAACCTTTACGTTGCGCGAGTTGATTCACTTCTTCCTGCTGGCCGCCATGCATCAATGGAAAAGCTTTCGCCACGGAGCCGATGTGGGGCCTCTGTATGGATTGCCGCGATTCCATTATTCAACTGTATCCAAGAAAGCGAAAGAAGTTCCCTATGACATCATGAAACGCTTGTTGGCGTTGATCATTTCCAAGTGCAACCGCCAAACCCGCCGTTCGCTTCGGTTTCCCAAACCGCTTCGGGTGGTGGATTCGACGACCGTCACGGTCGGGAAAAACCGCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-15.90,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 471374-471840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYBP01000003.1 Geobacillus kaustophilus strain Et7/4 LG52.Contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 471374 37 100.0 33 ..................................... CGCTTCTCCTGTTCTTCCAACTCTCCTTGCCAT 471444 37 100.0 34 ..................................... TCAAATAAAATAGTATCAATTAATTCGCAGCGGA 471515 37 100.0 35 ..................................... GCTTCACCGGTTATCGTGAGACCGGAGTCACAAGC 471587 37 100.0 37 ..................................... AGCCGCAATTCCGTGGCATATTTGTCGGACGGCACGC 471661 37 100.0 35 ..................................... CATATGTTACGTGAATCTAAAATGCCTGCGCTTTT 471733 37 100.0 34 ..................................... GATTTCTTTCCATATGAACTTTTGACCGCCGATC 471804 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 99.6 35 GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Left flank : CGGTTCAAGCCGACTTCACGTGCCAGTTGGGGACGAAACAATGCCGCTCCACCAAGCGTCACCGGGTGGTGATCTTTCGAGATGCGAATGGCCGCGACATTCGGGTCGTGACGAACCTCTTCCATGCGTCTGCGGAAACCATTGCCGACATGTACCAACAACGTTGGACTGTTGAGGTCTTTTTCCGTTGGGTGAAGCAATATCTGAATGTCCCGACCTTGTTTGGCACGACGGAAAATGCGGTATACAACCAACTGTTTGCGGCGTTCATCGCGTATGTGTTGCTGCGATGGCTGTATGATCAAACCAAAAAACAGACGAACGTCTCTCTTTCCTTCATTTCGTTCGTTCGCCGTTTTTTCTCTGGGCAGCTTCCTCTCGATTGGAAATCCGGGATGGCCGCTGCTTTGTTTGAGTATGCCCAAATTTATGGAAGGCGTATGTATAATTTTGGATAATCAACACTCGTGTAACGATACATTAAAAAAATCGGCTATATA # Right flank : GAAATAAACAAGCACGTTGCGAGCAAAACAAGTGTGTATCAAAACCAAAAGAGGAAACATCCGTTAGCCCTTGGCTGAGGAAGCCAGGGGCCATTTTTTGCCGAGCAAAGAAGGAATTTGCCGCTTGCTGTCGAATTAATTTTTATGAAAACAGTTGCTTCACCTTTTCCACATCTTCTTTAAACTTCTCATGTGTTTTTGCAAGCACTTCTTCAAAGACGCCGTTCATTCGTTGTTCCAGCACAGCGATTCCTTCCCCGGTAATGCCGCCTTTGACGCATACTTTTTCCTGCAACGTTGGCAATGTGTACAGATTCCGCTTGAGCAGTTCCCCAAGGCCGATGATCATATCGGTCGCCAGCATCGTCGCTTGTTCTTTCGTGATGGCGGTTTTGACCGTCGCGGCGTCGATGAAGCGCTGAAGCAAATAGCTGAAAAACGCCGGGCCGCAGCTTGAGATGTCGGAGGCGACGCGGGTGATGGCCTCGTCGATGTACACC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCCAAAAGGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACACCCGGCCGAAAGGCCGGGTGAGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-15.90,-16.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 873067-874849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYBP01000003.1 Geobacillus kaustophilus strain Et7/4 LG52.Contig26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 873067 29 100.0 39 ............................. TGAAATGAAGGCGGAAATGGCCGCGGCGGAATGGCGTAG 873135 29 100.0 35 ............................. CAAGCAAGCCGGATGTAGATAACTATGCGAAATCC 873199 29 100.0 36 ............................. TCAAATGGTTCAATGAGCAGGACTGGGAACGATACC 873264 29 100.0 37 ............................. CAGAGATACACGTGGGACGGGATCGCGGAACAACTGC 873330 29 100.0 34 ............................. TTCTCATCAAACGTCACATCGCGCCTTGTTGCGC 873393 29 100.0 37 ............................. ATAATAATAAAATAATGGCCACTTCAAAAGGAATGAA 873459 29 100.0 39 ............................. CCGGAAGGGTTAAATATTGGCTGGATTACTTGGTTTATA 873527 29 100.0 36 ............................. ACGACGCGACTTCTGAATCGTCCGATCCGGAAGCGC 873592 29 100.0 36 ............................. CAGGGCGGACGTATTGAATTTGACTATTTAGTTAGT 873657 29 100.0 36 ............................. TGCTTTGTCGGATCATCTTCCCCCTCCTAGCGCATA 873722 29 100.0 35 ............................. TTGATCATTTTATCAATGTAAGCATTCATTTCCTT 873786 29 100.0 39 ............................. GTGTCTAACATCAAAGTAAAGATCATCAAACGATTTTTC 873854 29 100.0 36 ............................. CAAGTCCTCAACCCCATTTTCGTTTGGGATCATGAT 873919 29 100.0 36 ............................. GAATTTTTCTTGTTCAATTTTCATACGTTCAATTTC 873984 29 100.0 37 ............................. TTCAATAGCTGCTTTACGATTCCACATAATTAATCAT 874050 29 100.0 37 ............................. TTCGACACCAGAGCCGTTGCATTTGAAGCAAATTCCT 874116 29 100.0 36 ............................. TCAGATCACTGACACAATAAACGCAATAACAGCCAT 874181 29 100.0 38 ............................. CGGCTCGGCGAATACAAGTCCGCTATCATACAGCGCCT 874248 29 100.0 37 ............................. TTCAATAGCTGCTTTACGATTCCACATAATTAATCAT 874314 29 100.0 37 ............................. TTCGACACCAGAGCCGTTGCATTTGAAGCAAATTCCT 874380 29 100.0 36 ............................. TCAGATCACTGACACAATAAACGCAATAACAGCCAT 874445 29 100.0 38 ............................. CGGCTCGGCGAATACAAGTCCGCTATCATACAGCGCCT 874512 29 100.0 37 ............................. TTAAAATCGGTGAGAAAGAAATCGGGCTGAAGGCTAC 874578 29 100.0 34 ............................. AACATAAATTGCGCCGTCCACAAGGCATTCATAT 874641 29 100.0 37 ............................. TGCGATTTTAGACATCCTGAAAATCGAAATGGAAGAG 874707 29 100.0 35 ............................. CCGATTTCAAGCGGCAGGCTGGCGAGCACCGTTCC 874771 29 96.6 21 .................T........... AACCATTTCATCGCCGAAGTC Deletion [874821] 874821 29 86.2 0 .......T.........T......C...A | ========== ====== ====== ====== ============================= ======================================= ================== 28 29 99.4 36 GTTTTATCTGAACGGAGAGGGATTTAAAG # Left flank : GATGAACTATATAAACCGTTGAAAGCGTGGTGGTGAAACATGTTTGTCATCATTACGTATGACGTAGCGGAGAAGCGGGTCAACAAAGTTTGCAAAAAATTAAAGGAATACCTCACTTGGACGCAAAATAGCGTATTTGAAGGGGAGATTTCGAAAAGCCTGCTGATGAAGTGCATGTATGAATTGGAGATGATCATTGATAAAGAAGAAGACTCCATTTACTTATACGAAATAGGAAATCCGAAGAATATAAAAAAGCGGGTATTTGGTCAGGAAAAGAATTTTGATGAGTTGTTCCTCTAAGTTTTAAGAATTTGCAGTGAACCTCCTTTTAACGGATAAATGGGGAAAAGCTTGATTTATCAAGGGAAGTGTGTCATTATTTGCGCAGCATAGAAAACACAATTACTACTTTACTGCAAAATGAGGTATAATTGTTGTGTAGGCATTAGCCGGAATTCCCTGCTACATCAATGAATATTGCTTTGTAACTGATAGGG # Right flank : ATCGGCGATAATGTGATGCCCGAGTTCGACAGTGACTAGGCAAACAAAATGCCTTTCGTCCCTTGATGCAAAAGTGACGAGAGACATTTGGGCACACTTTGGGCGTGTAGCTTAGGCGCGAGGATGGATGCCTAGGATCTTCGGAGGAGGCTCCAGCCCTAGAGCCGCAAAGAGTTGCGCTTGTTTGGCCGTCAGTTCAGTCCGTTGATGCAGGTCGCCGTTTTTGGAAGAAAAATGACCAAGCATGAGACGCTCACATTCGTCTCTTACTTTTGGCCATGATTCATGAGTCAGGAGAAAGGAATCGCGAAATGCTTTGGGCCAGACGTTCCAGGACGGCGCGATCCACTTCATCTGCGCGCCCAAACGAATCAATCACCTTCGCTTTCGCATATTTGGCCTTCGGATCCTATCCGTTGTGAGCAAGCTGGAGATACGCCACGGTCGTTCCGTCTTTGTTTTTGTGTGTTACTCGTCGTATGTACATGCCTATATTATAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACGGAGAGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //