Array 1 4879-4242 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJRX01000027.1 Klebsiella pneumoniae strain EuSCAPE_TR161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4878 29 100.0 32 ............................. CAACCTCAATTCCTAATGGCTGTCTAAGGAAA 4817 29 100.0 32 ............................. CAGGGTTTGCCCTTTTGCACCGCGCAGCGGTC 4756 29 96.6 32 ............A................ AGCAACGTTTCCGGATTATATGGCTGGAACGT 4695 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 4634 29 100.0 32 ............................. CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 4573 29 93.1 32 ............CA............... CAGCGTCTGAACGGACGAAACATCCCTGTTGA 4512 28 93.1 32 ..........-..C............... CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA 4452 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 4391 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 4330 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 4269 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 95.0 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182199-184848 **** Predicted by CRISPRDetect 2.4 *** >NZ_UJRX01000005.1 Klebsiella pneumoniae strain EuSCAPE_TR161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182199 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 182260 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 182321 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 182382 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 182444 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 182505 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 182566 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 182627 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 182688 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182749 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182810 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182871 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 182932 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 182993 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 183054 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 183115 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 183176 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 183237 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 183298 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 183359 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 183420 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 183481 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 183542 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 183603 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 183664 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 183725 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 183786 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 183847 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 183908 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 183969 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 184030 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 184091 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 184152 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 184213 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 184274 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 184335 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 184396 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 184457 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 184518 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 184579 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 184640 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 184701 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 184762 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 184820 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //