Array 1 392093-393224 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP049223.1 Lactobacillus iners strain C0094A1 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    392093	    29	  96.6	    33	............................C	GGAAGATTATAAAGAGTGGGACTATACCGCTGG	
    392155	    29	 100.0	    32	.............................	TAGTAAATCGCTTAGCAACATTGTTACAGTGT 	
    392216	    29	 100.0	    32	.............................	GGTGTTTCTGGATATGTGCATGTCCAACGCTA 	
    392277	    29	 100.0	    32	.............................	GAAGAGCTTTTAGTAAAAAGAGCTTTAGAGGG 	
    392338	    29	 100.0	    32	.............................	TTAGAGAGCCTATGCAAAAGCTGCCACGAAAA 	
    392399	    29	 100.0	    32	.............................	ATAGCTTGCTTGCACTGCACCTTTAGCGAGTG 	
    392460	    29	  96.6	    33	............................C	TATGGGAAGTTTTTACTTTTCTATGTCAATGCG	
    392522	    29	 100.0	    32	.............................	GGAAAACAACAATGCGGACTGGAAAGGCAGAT 	
    392583	    29	 100.0	    32	.............................	CAGCAAAGTAGCAAACGTATGACGAAAACCAT 	
    392644	    29	 100.0	    32	.............................	AGACGCACTTACGCAAAGTATGACTTACTTTT 	
    392705	    29	 100.0	    32	.............................	AAAAGGGGTGATTCTGATGAGTTACACATTTA 	
    392766	    29	 100.0	    33	.............................	TCAGGGTCAATAAAGCTACTAGACACAGAGTTA	
    392828	    29	  96.6	    32	............................C	GATCAATTTTTGGAAAGCGGGGAGTATATAGG 	
    392889	    29	 100.0	    32	.............................	ACTTGCGTCGGTATGTAGCCCGTTCCAGTTAT 	
    392950	    29	 100.0	    32	.............................	ACGCCGTTGAGATGATAGAAAGCGACTTCAAT 	
    393011	    29	 100.0	    32	.............................	GTTGCGAAGTCAGTATTAGATGCTTTAAATCC 	
    393072	    29	 100.0	    32	.............................	GACCAACTAAAAGATTTAGCAGGCATGGTAAA 	
    393133	    29	 100.0	    33	.............................	CAACGCTTACTTCAAAGTAATAAAGTCACTTTA	
    393195	    29	  82.8	     0	.....................AC...TTA	|                                	T [393215]
==========	======	======	======	=============================	=================================	==================
        19	    29	  98.6	    32	GTATTTCCCGCACATGCGGGGGTGATCCT	                                 	       

# Left flank :   GTGCTATAAAAATTGCCAAAAATATTGAGGAATATTCATGTATTGTTAAACAGAATATTACACTACCTAATGCAATTAAGATTTTAACTGGAATAAGCGATGCAGAACTAAAAAATGGTAAAGATGAGTCTGTAGCAATTAAAGAGTTGTGCACGTTTATTGGAGATAAAGCATTAGTTGGCTATAATGTTAATTTTGATATCAGGTTCATTAATGAAGCATTAAAACGTAACGGACAATCTCAATTAACGAACAAAGTATACGATGTCATGAAATATGTAAAACGTGATAAGATGTTTTTAAAGAACTATAAGTTGGATACAGTATTAAGTGAATACGGAATAAATATTAAAGTACCACATAGAGCGATTGAAGATGTAAAAATAATACAACTTCTTATTAGCAAATTAGATGGATTAACTAATAAATCGAAAATTTAAAAGTGAATGAAAAAATGGTATCCTTAAGTTGCAGGTGGCGTCATAGATGGATCTTTTAGT
# Right flank :  AAAAACACTTCCAAATTTTTATTTACAAAATTTAGGCAATATATCATAATATGTTTAACTTAGGAGTAAGCATGTTATTTTTAGTTTTGGCTTGCTTTTTTCTTAATATTGTACTTTCCGTACATGCTGTGGATAATAAAGTTATTTTTTATAATTAAAAGAAGAAAGGTAACATATATAATGGGAAGAGAACTTATGGGGTTGGCTAGTTGTGATGATGATCGCAAAGCAATTATCAATTTTACTATAGTAGCTGCCAAATATTTTAACGATCAAGTTACAGTTGAAAAAATTAATGATAGTTTGAAGGAACATAGTCAAGCCCCTTTGACAGAAGAAGAGAAAAAATTTTATGGGGTAAAATAATTTTTGCCAAGTACTCTCTATTTTTATCGAGTATTGCTATCATGAAAAATAAAAGCACTAATTTTAATATGTATGCGTGTTATAGAATACATATCGAAATAAGTGCTTTTTTGTGATTTGAAATTTTTTATTTA

# Questionable array : NO	 Score: 6.19
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTTCCCGCACATGCGGGGGTGATCCT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-9.90,-9.80] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [1-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.64   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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