Array 1 9838-9626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVNV01000066.1 Kytococcus sedentarius strain 262_KSED 946_63081_1183049_851+,823+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 9837 32 87.5 25 .GT..............C.......T...... CGAAGTAGTACCAGGTGCGCCCAAT CG,T [9812,9815] 9777 32 100.0 28 ................................ GTCCGAGGTAGTACCAGGTGGCTCCGAG 9717 32 100.0 28 ................................ AGGACAGGAGGTACCAGCGCCCATCGAC 9657 32 71.9 0 ....AC..........TT....AT...C.TC. | ========== ====== ====== ====== ================================ ============================ ================== 4 32 89.8 27 CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG # Left flank : GGGCGCAGGTTGACGTAGTGGTCGAGCGCGAAGCGCAGCTTGAGGAGTAGCCCTCGCTCGAGGACGCCGGAGGGGACGGAGGGGTCTCCGACCGCTCCCAGGAGGATGGCGTCGTGGCCCTTGATGGCCTGAAGATCGTCGTCCGTGAGCGTGTCGCCGGTGGCATGCCAGCGCCGCGCCCCCAGATCGAAGTGGGTCGTGGAGTAGGCGATGGCGCGGTCGGCCAGAACTCGGTCGAGGACTTTCAGGCCCTCGGGTACGATCTCCTTGCCGATCCCGTCCCCGGGGATTACTGCGATTTTCAGTGTCATGCATCCATCTTCCCCGCTGGCGCTTCCCTCGGCCCGCCCGGTCCGACCCGTGGGCTGTTTCATTGGTTACGCCGTTTCAACGAGGCGGGGTCGCCGGAACATTCACGCGTTCCGACGACCCCGCGATCGGTATCGGGTTGATCAGATCCACGCGCCCGAGGGAGCGAAGAGGTACCAGCGCCCGTCAAT # Right flank : CTGGATCAATGTAGTACCAGCTTCCGCCGCTCATGAGCCATCCGGACACGCGGGCACCGTACGCGTTGTAGTAGCTCCAGGCGCCATCCTGGTTATCCCAGCCCGTGACCATCATGCCGTTGGCGTCGAAGCGGTAGGTGGCCTCGCCAATGGTGAGTGTTCGAGAGGTGGCGAACGTGGAGTCTTCGAGTTGCCACTTCCACCCGTTGCCGGTGTTGACCCAGTGGGCGGGTTCCGTCGCGGGGGCGGGATCCGGACTCGGCTGCGGCGTGGGGGCGGGTCCCTCGCCGGGATCGGTGAGGCCGAGGTAGGAGGCGTCCATCCTCATGAACTCGATGTTCTTGTAGCCGCCGGACTCATACAGCAGGCCCCAGGTTCCGTCGGCGAGGGGGTGCAGCGTCGAGTAGGCCATCTCGCCGCTCTCGAAGACCTTACCGTCACTCCAGGTGAAGCCGTCGTCGTAGGAGACGCGTACCGTGCCGTTGGCGCGGGCGCTGGCG # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:-0.14, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 642-899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVNV01000071.1 Kytococcus sedentarius strain 262_KSED 951_865_15166_3_,...,326+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================ ================== 642 30 100.0 48 .............................. ACGGGGACAAAACGGAATTTTGCGAGCAACGTGAGAATATGGTCAGAA 720 30 93.3 44 ..A...................T....... CTGCCGGTGGTGAACTCCTTGTTGCCGTTTTCCTCAAGTCAGAG 794 30 96.7 46 ...................C.......... TCGGTGTTGTACGCGCGGGTGGAGGCGGTTGCCTGGGTGGTCGGAA 870 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================ ================== 4 30 97.5 46 AGCACCTAGCGCCATAAGGTGCATTAAGAC # Left flank : CTTTTCGTCAGAAAGCACCGAGCGCCATAAGGTGAATTAAGACCCCTCGTTTCGTGGCGCGTGTTCTCGGGCAGTTCCCTGTCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAAGCACCGAGCGCCATAAGGTGCATTAAGACCGAGTGCTTTCCACGCTCGCGGCCTAGCGCTATCTCCCGTCAGAAAGCACCTAGCGCCATAAGGAACATTAAGACGACTCTGGTCCGTTTTCGGTGACGCGGAGCTTGTGGCGTCAGAAAGCACCTAGCGCCATAAGGTGCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAA # Right flank : T # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCACCTAGCGCCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [5.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //