Array 1 29080-30732 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRJ01000045.1 Escherichia sp. MOD1-EC5457 MOD1-EC5457_45_length_38923_cov_38.9427, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29080 28 100.0 32 ............................ AAATTGCTTCCGACCATAAAAAACAACTAGAG 29140 28 100.0 33 ............................ ATTAATATGGGCGCTCGGGTCATTGCGTTTTCT 29201 28 100.0 32 ............................ GCATCAGACTGATTGCCGCCCAGCACCAGCAA 29261 28 100.0 32 ............................ TGCTCGCGGCGCTCTTTGCGCTCCAGCTCTGT 29321 28 100.0 32 ............................ AAAGCCTGGAATTTCAATTTTAATTTGGGGCA 29381 28 100.0 32 ............................ TCGAACCCAGCTTGCTGTAGCTGGGCAATGTC 29441 28 100.0 32 ............................ GCAGATATCTCTATTGCTAAACTACCTGTTCG 29501 28 100.0 33 ............................ AGTTCGGGCCGAACAGCTCAAGGCCGATTTTTT 29562 28 100.0 32 ............................ TTAACAGGGCTATTTTTATTTACATTATGTGA 29622 28 100.0 32 ............................ GGCGAACGCTGCACACCACGGCGTTTCATCAT 29682 28 100.0 32 ............................ CCGCGCGAACTGGTCGCGCAGCCGTGCGAGAT 29742 28 100.0 32 ............................ GTCATACGTGTAAACAGTATCGCTACCCGGAT 29802 28 100.0 32 ............................ GCGATGGGCGTCCACGAACCACCTGGGCGCAC 29862 28 100.0 33 ............................ TCAATAATATTATCAATATAAAATATTCGGTAT 29923 28 100.0 32 ............................ TCCAGCCTCATTTGAAACGCCGCCAGCATATT 29983 28 100.0 32 ............................ TGCTGCCGTACCGCGATTACAACCAGGAATCC 30043 28 100.0 32 ............................ AAACGTATCGGCGCAGTAACGCTGGAATACCT 30103 28 100.0 32 ............................ TCATCCCGGCCTTCAATATACTGAAGGCCGTT 30163 28 100.0 32 ............................ TGACTGAAGCGCCACCAGCGATAGAGCCGCAA 30223 28 100.0 32 ............................ GCACGAACTGCGCCCGGATTTATACCCGAACC 30283 28 100.0 32 ............................ GATCAATGCGGCGCTGATTTCTCGCTGCGCCG 30343 28 100.0 32 ............................ AGGTCTGTAGCGTCCTTGTAATCTCTCGCTTT 30403 28 100.0 32 ............................ ACCAAACTGTGCGGCAGCTTTGCGGGAGATGT 30463 28 100.0 32 ............................ ACCAGAATTAATAATTTTTTCATCATTACGCC 30523 28 100.0 32 ............................ AAGATAAGAGGCAAAGCGTTCAGTGGCATCAT 30583 28 100.0 33 ............................ ACCGAAACAGCCATGACCTGGCTTAAAGATCAT 30644 28 96.4 32 ...............A............ GCGAACGTCAAAAAGAACTGGTGGCAGCAGGC 30704 28 85.7 0 ...........A........T...C..T | C [30727] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTATGACCGGGCAATGGGTGCACGTCCGATGGCGCGTGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGTTGGTGGACGGCGGCCAGGTCACCGTTGCACTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATGGTGTAAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCCTGTATGGGGTTACGGACTTTTTTCTTTGTGAGGTGAGGGCGGTTGTAACCCTAATTTTTATGGTTACTGTAACTTATTGATAATTAATGCTGCTGGAAGGTAAGGATAAAAAAGGGTAGCAGCAGGGAAATTAGATAGTTTTACTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAATGGTAGACGTTTGGTCATATCATGACGCTCTCAACTTCAAAACATTAGTCTTAGCACACAATAACAATTGTAATAATTTCGACAGAAATCAATTTCCTGCACAGAAATCAATGTTGTACTAATCCTAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGACCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGGGGGCGGGTGGAGTATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCTATTGCGAATACCACGGCATTAATGTTGGGGATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCGGGGGTGATGGTAGGATTTTGTGGTACGGATGGCACACCGCTTTACTCCGCCAATGAAGTAGATGTTGATGTCTCCTGGCTCAGCCCACAAAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 21642-21074 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRJ01000068.1 Escherichia sp. MOD1-EC5457 MOD1-EC5457_68_length_22744_cov_43.2375, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21641 28 100.0 32 ............................ GGCGCGGGAGTGCTTGATTTCGTATACGTCAT 21581 28 100.0 32 ............................ CACAGTTCGAAACCCACGTTTGCTGTTACGAG 21521 28 100.0 32 ............................ GAATTTTGGTGCAACAGCACCGGCCACCGGCG 21461 28 100.0 32 ............................ AACTTGTAACAGGAATGAATATTAATGCTCAC 21401 28 100.0 33 ............................ CCCAGAACCCGGCAAAAGTTGCGGGGGGCGTAT 21340 28 100.0 32 ............................ GCGTCCTGTGCGCATCGCTTCAGCTTCCATGA 21280 28 100.0 32 ............................ TGCGGCCCGGCCTCATCACTCTGTGCTACCTC 21220 28 100.0 32 ............................ ATTGTTAAAAATCCTGAATAAACTTATTAATT 21160 28 100.0 32 ............................ GCTAACGCGGAGATACGCCCCGGCTGCGGGTG 21100 27 89.3 0 ...........C........-...T... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAACTGAGAGGTATACGAAGCCATCTATATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGTTGCCTGACCTCATGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAAAATTTATTTAGATTGGTTTGTTTGGTTATGCATTGTTCACGCAGTTCATCCGACCAGGATTGTGACTGTATATGCTCTGGGCAATTATTTATCAAAAGCTACGCTGGAAATATGAGATTGAAGACATTCCAATCGACCCTTTTTTCAGGGTGAGATGTAACGCATTGATTTTATTTATTACTATTTTGATGCCTCGAAAAAGGGTATGAATTGGGGATTTTGTAAGTTTTAACAGTAAATCAATAGGATAGTCTGCTATTATTCCA # Right flank : ATCCATAACCCCATATTTATTTTCTTCCTTAACTCCAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGCAACGTTTCAAGAACGGTGCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAGATAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //