Array 1 35968-35142 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCR01000060.1 Geobacillus stearothermophilus strain GS27 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 35967 37 100.0 34 ..................................... GAATCGTTCAACGAGGGATACAACATCACCGCCT 35896 37 100.0 34 ..................................... TTTGAAGGCGGCGCCATGAATGAAGTACACCGCT 35825 37 100.0 34 ..................................... ATAACTGTCCACCAAAAATGTTGTGCGGTTCTCG 35754 37 100.0 34 ..................................... CGATACAGTTCCCCATCTCGTTCCTGCGTTGTCA 35683 37 100.0 34 ..................................... AAGGATATATCGAAAATCTCCCTCCGGCAAAAAC 35612 37 100.0 36 ..................................... AACAGTTCGAACAGCTCAAAAATCAGATGGCCCAGC 35539 37 100.0 35 ..................................... AATCCGATTGTCATTGTTTATCCCCTTCCTTGTCC 35467 37 100.0 35 ..................................... ATCGTCCAACGTTCTAAAGGATTAGGCGAAAATAC 35395 37 100.0 34 ..................................... CCGCTCGCTTGCCGAGCTGTCCGAACCGTTGGCC 35324 37 100.0 37 ..................................... AAGGAGACGCAGGCACAAGCGCAGCAAAGCCGTTAAA 35250 37 100.0 35 ..................................... ACAAGGAAATTTGCGCTATTATCGACGACGTGTCC 35178 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 12 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : AAATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCATCAATTCCGCGAAGCCGATGATCATGTCGGTCACCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCAGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.40,-15.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 1 3700-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCR01000174.1 Geobacillus stearothermophilus strain GS27 scaffold60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3699 30 100.0 38 .............................. CATTTCTTCCGGTGTCATTTTCTCGATCATTTCTTTGG 3631 30 100.0 36 .............................. CTCAAACTCCGCAATCGCGCCACGCATCGCGAAGAA 3565 30 100.0 37 .............................. ATACTTCGCTTGATCGATGACTAACGTGCGCGTTTCA 3498 30 100.0 37 .............................. TGGAGACGCTGACACCGGACGAAAAGGAGGTGTTGCG 3431 30 100.0 38 .............................. AACAGGTGACGATCACGTTCAACCCGTGGAGTGAGCGG 3363 30 100.0 37 .............................. CACCTCCCCCCGGTCGAAGCCGGTCGCTGATCGAAGC 3296 30 100.0 35 .............................. ACGACAGGCGCTAGGCCTGCCTTGTGCAGGTAGAT 3231 30 100.0 37 .............................. CCCTGTGTGTTTGTCGTAATCATAGCCGTAAATATGG 3164 30 100.0 38 .............................. ATGTTAAGGACGCTCTAAATGATGCAAAGCTCGTGAAC 3096 30 100.0 38 .............................. TCAATTCCGTCAAGGCGTTTCAGCAGACAGCAATTGAA 3028 30 100.0 37 .............................. GACGGCAAGATCGAAGAGGCGTGGGATGATGAAGAAG 2961 30 100.0 37 .............................. AATCGAGAGGATACAAGGTCAAGGACCATCGAGCGGA 2894 30 100.0 36 .............................. CGAGAAAAAGACACTCCCGAAGAAGGTGGAAGAGGA 2828 30 100.0 35 .............................. ATGGCTAGTTGGATGCAATAGCGGATTGCTTCGGA 2763 30 100.0 37 .............................. AGAGGTGCAGAAGTAAGCATTTTCGGCCAGAAAACAA 2696 30 100.0 37 .............................. GTCTTGTAGTTCATCTAATTCGGTAATCTCGCATACA 2629 30 100.0 37 .............................. GAGCCGCTGAAACACGTTGGGAACGGCTACTATCAAG 2562 30 100.0 38 .............................. ATCCATGAGAAACAGGTCATTTGATACTAACAATTCAA 2494 30 100.0 37 .............................. GAACTCATAATTCCCGCGACAAGATCAGCTTGCAGGC 2427 30 100.0 37 .............................. AATTCACTGTCGAGGAGTTGCAGGAGAAGAGCATTGC 2360 30 100.0 39 .............................. TCAGAAAGGGGAATGAGCAATGAATATCCGCTTTACTGC 2291 30 100.0 37 .............................. CTCGAACACCGCAAATTCTACGTATCGAGAGCCTATA 2224 30 100.0 35 .............................. TTTTTACTGTGTTTTTTATAATTTAGGGATGTCAC 2159 30 100.0 40 .............................. CCATCAGTGGTATCCCAGTCAAACATGTCGATGTCATCTG 2089 30 100.0 36 .............................. ACCAATCCAAACGCCGTATCTTTACGATTACAAACT 2023 30 100.0 35 .............................. TCTGACGCTTCGTTAATGAAACGGTAAAGGTCCTC 1958 30 100.0 39 .............................. TATTGTTTGGCGGCGATATGCGCCAGCTCGTGAATTTGC 1889 30 100.0 38 .............................. GCAGGCGGCTGTCTTCCATGATCTCAACGATTTTCTTG 1821 30 100.0 36 .............................. CGGGTTCGCGCAAGGGAGTCATTTTCGAGCCCACAC 1755 30 100.0 39 .............................. ATTTTTTCTGTATGATTTTATCAACTCCTCTCGTATCGC 1686 30 100.0 35 .............................. CGTTCAGAAACACCTCCGGCTTGTTAATGATCTTC 1621 30 100.0 36 .............................. TAATCAATCTCGATGACAAGCCGCACTTGTCAAAAC 1555 30 100.0 39 .............................. AACGCTCGTCTTGGATGGAATAGTTCGTTTCCGTCATCG 1486 30 100.0 36 .............................. TGTCGTCATCACGCAGGGGTATCGCTCCAAAGAAGA 1420 30 100.0 36 .............................. ACCTATGACGACGACCGCAATGCCAAAACCCCTCTA 1354 30 100.0 37 .............................. AATTTCATGTAGGCATTCGCGAACGTCTCGATTTCAT 1287 30 100.0 37 .............................. CTCCTAAAACATCTACAGATAAGAAACACTTGAAAAT 1220 30 100.0 36 .............................. GTCTCCGTAAATTCGCAACCGTTGTTCCGTATTTTT 1154 30 100.0 35 .............................. GTGGATTGGCTAAAGGGGTAAATGGCGTCACTGGC 1089 30 100.0 35 .............................. GATGAACAAGACAGAAAGCGGTATGAATCACTTTG 1024 30 100.0 35 .............................. AATGGCAAATAAAGAAGATTTAAAGGTTCTTCAAA 959 30 100.0 39 .............................. TGAGTATCTTGTGGACTTGTCGGTGAAACTCGACGAGGC 890 30 100.0 35 .............................. CCGTATAAACGTGTAGTGATTAGAAACTGTTTTCC 825 30 100.0 38 .............................. ATGGTTAATGGTTGCTGGGAAAGCCAGCTCTTGTGGCT 757 30 100.0 38 .............................. AAATGGATTAAGGAGCTGATACTATGGAAGAAAAATTC 689 30 100.0 37 .............................. TTCCTGTAGATCAAAAGGTGAGATCGTGAAGCGGCGT 622 30 100.0 35 .............................. AGGATACGATGCTCGCTGTTCTACCGTACGCACTT 557 30 100.0 38 .............................. GATCAATTCCGTGCACTCGAACCGGAAACGTGGGAAAA 489 30 100.0 36 .............................. GCCGATATATCTCCGTTTGAGGAACCGGTCGACTGT 423 30 100.0 35 .............................. ACGATCGAAGTCGGAATGTTAATCGCAGTGCTTTC 358 30 100.0 35 .............................. TGTCGGTTTAGAATTTCGTTGATTTTAGCGTTTTG 293 30 100.0 38 .............................. TATACGATTTTCGCGAGGTAGTCAATACGAAAATCAAA 225 30 100.0 34 .............................. TCCTCGCCTCTCGTAACATATTGGAGACAGTCGC 161 30 100.0 40 .............................. CAACCAACTCACGGCGATCAACGAAGAATACACACAAAAA 91 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 55 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGG # Right flank : CCATGACGGAACTCCAGCGTTCATAGTGAACGAAAAAACGTTCTGTAGATGAGCATTTTTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 13631-12410 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCR01000174.1 Geobacillus stearothermophilus strain GS27 scaffold60, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13630 30 100.0 37 .............................. CATCAGGAAAACCCTTCAAAAGTATCATGATAGTATC 13563 30 100.0 34 .............................. TTTCGTGATTTTCTGCCGCTCATACGCCCACCTC 13499 30 100.0 36 .............................. TTTTACCCGGCCGCTTGGAAGTCACTGCACCAACAT 13433 30 100.0 36 .............................. CCTAGAAGAAACGCTGACTATTATAAACAAATCGCC 13367 30 100.0 36 .............................. ACCAACGTATTTTTTCCAACAATACACGCTTTGCAA 13301 30 100.0 34 .............................. CGAGATGACGCAACCATTCCAACCAGAGCGACAG 13237 30 100.0 36 .............................. ACAAGCGGATCGACTGCGGCTTCGTTGCCAATTTTA 13171 30 100.0 36 .............................. CTCAACAAGCGAACCAAATTTCACTGACGGTCCGCA 13105 30 100.0 36 .............................. TCATCGTCGTAATCTTTTGCGTAGCGAGGCGCTCCG 13039 30 100.0 35 .............................. CGGCTTCAAAAGCTAAACGAGCCAGACCCATCGTA 12974 30 100.0 36 .............................. TTTCATCATCACATGCGGTTGAAATTCGATTGATAC 12908 30 100.0 37 .............................. ACCGCTATGTCGAATTAATCGAAACCATCAGCCGCGA 12841 30 100.0 37 .............................. ATTGGCAAACGGACGAGTGACGGCCAGCGTAAATGTG 12774 30 100.0 39 .............................. ACAACGCATGGGACAGTATTAAAAGCTTCACATCGTCTA 12705 30 100.0 39 .............................. ACACAAGAACAATTGCGCATGAAAGACCGACGGATGATT 12636 30 100.0 36 .............................. GTTCTCAATGTGCTAATCACTCAATCGCGGTGAGCG 12570 30 100.0 36 .............................. AATGTTTTCTATTAAGGTTGATATAAAGTCTATCAC 12504 30 100.0 36 .............................. CCTGTGACAATCCATTCAAAGGCTTCCATTTTCTCA 12438 29 90.0 0 ....C............A.......-.... | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.5 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : ACCTATGAGGGATTGAAACGCTGGTTGTAAATCTCCATTTTCACGCGATAAATCTCTT # Right flank : CTGCGCTAACGTCATAAAACGTTCGGCGCTTTTTTGTTTTCGCCGGACTTATGGGGAGTTGCATGTCTTGTAGTAGTATCGTAATTATGAATTTTATAAAAAACAATCTCGTTTTTTATACCATTTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATGCGGAGGGGTGATAGATTGATCGAAGCAATCGCCCGAATCGGAAAGATGGTGCTCGAGAAGCAAGGAGAAGTGTCGGTCATTGATCAGCTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAGGGAAACGCTGTCTGGGAAGGATGCGAGGTTGAGGAATGCGGAAGTGATTATAAGAAATATTTGTTTCGTTCCGGATCAACGCGCGGAATCAATTATTCTCCGACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACCC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9692-10650 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCR01000139.1 Geobacillus stearothermophilus strain GS27 scaffold88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 9692 30 100.0 38 .............................. CTAATCCCGCAACCGACGGCAAAGGCGGTACAGACGCC 9760 30 100.0 37 .............................. CAAGGTGAAAGACCTCGAAAACAACGAATACACGAAA 9827 30 100.0 37 .............................. ACACTTGATGCGGTGCAGAAGTTCGTCAGTGAAAACG 9894 30 100.0 36 .............................. CCAGGTTCGCCACCAGACTGTCCTTTTGGTTCAGTT 9960 30 100.0 38 .............................. ATTTATCAATGTTTTTGCGTTGTCCCAAAAACGGTATT 10028 30 100.0 36 .............................. TGCGAGATAACAGCTTATAGTCCTCGGATGTCGTGG 10094 30 100.0 37 .............................. CCACCCGCGGCGTTTCGCTGTACCATTTGGAAATATG 10161 30 100.0 36 .............................. CTTTCTCTTGGTCGGCTGGACTCATAGCGTTGCAAA 10227 30 100.0 37 .............................. AAGATTAAGTGTAAGTATTCACGTTTTGGTTTCTCGA 10294 30 100.0 36 .............................. CCATCTCCTTATCTCAATATCATATTACATCAGGAA 10360 30 100.0 35 .............................. AACGCTAGATGTTTTTTCTGGCTCACTGCCAGCAC 10425 30 100.0 35 .............................. ATGCCACACCAGATGAAATCAGCTTTCCGGTTCTC 10490 30 100.0 35 .............................. TTGGTAAATGTATGAAGTAACTCCACACCATACAC 10555 30 100.0 36 .............................. CGTTCATAATTCCCGCGACAAGGTCAGCTTGCAGGC 10621 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCATGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGG # Right flank : TAATGAAGCTAAAGGAGCATTCCCGTTAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4905-5990 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCR01000150.1 Geobacillus stearothermophilus strain GS27 scaffold106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4905 36 100.0 29 .................................... TGGATCATTGTTTGCTCATCTCCTTGCCG 4970 36 100.0 30 .................................... AACCTGTTGGCTGGTTTTGTTGTACAATTG 5036 36 100.0 29 .................................... TTGCCGAGTGGGGGTATTCTTCTTCACGA 5101 36 100.0 30 .................................... AATAACAAAGGTGATCATCCCCACTTTCTT 5167 36 100.0 30 .................................... TATGTCGTATGCTTCCAACCAAACGACCGG 5233 36 100.0 30 .................................... CCAACAAACTCTTTTCTGATTTCATGCACG 5299 36 100.0 30 .................................... TATCGTATTGATATAAGTCAATCGTAAAGA 5365 36 100.0 29 .................................... TCCAGTTCGCGTTGCATCTCGAATAGTTT 5430 36 100.0 29 .................................... TCAAAGATAAAGCCATCGGCTTTGTGAAA 5495 36 100.0 30 .................................... TTCTCCATCAGTTCTTTAGATTGGTGAACT 5561 36 100.0 30 .................................... TAAACGCCGTAAGATTAAAAATGAGCTAAT 5627 36 100.0 30 .................................... AAGCCGCAAGCTGGACGCGCTTCATCGCAC 5693 36 100.0 29 .................................... TGGACTTTTACAAAAGCCTTTGATGCGTA 5758 36 100.0 30 .................................... CAAGGGCGGTCGGACGGGGCAGAATGCCGC 5824 36 100.0 30 .................................... AAAAACAGGGGAAGGCTTGTCTAATCTTTG 5890 36 100.0 29 .................................... CAACGCTGTCGCGCTTAGCGCGACACAGG 5955 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AGCTTCGTCACGGCAAGCCGAAGCCAAGACCCTTCGTTGTTGAAATTGCCGGAACTTCTCCCGTTGCAACTGCACGTGTATGAGTAAGTTTATGCGGTTGCTCGTCTTTTTCGATCTTCCCGTCGTGACCAACCGGGAGAAGCGCGAATACCGGCGATTTCGCACATTCCTGCTGAACGAAGGGTACGATATGTTGCAGTTTTCGGTCTACAGCCGCGTCTGCCACGGACATGAAGCAACGGACAAACACTTGGCAAGATTAAAACGCAACTTACCTCCTCGAGGATCGATTCGGGCGATGGTCGTAACGGAAAAGCAGTACGCAAAAATGCAGCTGCTTCTTGGGGAACCGACAGCACAAGAAAAGAAAATCACATCCACCCAACTTACACTTTTTTAAAAAAAACGGAAATGGTCCCCTTTTTTGCATAAGCATATTTGCATTTTTTGAAAGCAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGATACGT # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 168-2332 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUCR01000046.1 Geobacillus stearothermophilus strain GS27 scaffold151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 168 30 100.0 37 .............................. GAACGGGTGACGGGTGCGATCAAAACAGTGTATGAAT 235 30 100.0 37 .............................. ACCAAGTCGTCGGGTATCTTTGGGGACAGCCGATTTC 302 30 100.0 38 .............................. CAATGGTATCAACCAAATCCCCCTTCCATGAGCGTCAC 370 30 100.0 36 .............................. CAAATCACTGAATGATGATATAATAAAAGTAACAAA 436 30 100.0 37 .............................. ATCTCGCTCTCAAGCGCCTTTTTTTGCCGTTCCAAAT 503 30 100.0 36 .............................. CCCCTCCAACTTGGCTTATACTTATTCACATAATCC 569 30 100.0 37 .............................. TTTGTTTGCGCGATTCTAAATACTCGATGAATTTATC 636 30 100.0 35 .............................. TTAGGAGAGACGGACGCCTAAACGGCGTCTTTTTT 701 30 100.0 37 .............................. TTAGTCGGCGCAAAAAAATATTTTGAGGTCGACGCTG 768 30 100.0 36 .............................. CGGCTCTCATCGACACCAACCACTGCCCGTTGTGAA 834 30 100.0 36 .............................. CGGGCGTTGTTGTGAGGTGGGAACTTTTGACATGGA 900 30 100.0 35 .............................. TAATAATAATTGTAGTCACTTGTTGCGAGTGATAC 965 30 100.0 39 .............................. AGTGAAGCGGACTTTTTCCCCTTCGATGACTTCCGGGAA 1034 30 100.0 37 .............................. AGCGCTTCAAAGCAGAAAAAAGCGCGCCTGCAAGCTG 1101 30 100.0 37 .............................. TGTACTCAATGATTGGGCGCTCTGAGGCGCTTCCTTG 1168 30 100.0 39 .............................. AAACCCGACTGCATTGTTTTCGAGAAGGAGGGGAAATTC 1237 30 100.0 36 .............................. TAAATTTCACCATACGGAGCACGAACCGTTTCGATG 1303 30 100.0 36 .............................. TGCCAAAAGTAAAGATCACCGTCGCGGAAAAAATGT 1369 30 100.0 37 .............................. AAAGACAACGTGTTCGTTGATGAAGAAGGAAACATTG 1436 30 100.0 36 .............................. AAGCATGATAAAACACAACACAGTCGTTCCGTAACA 1502 30 100.0 37 .............................. CCGGCTCATTCGTATCCAGCACGACGAACCAATCCAA 1569 30 100.0 36 .............................. CGCTTCGTTTCCAGCAATCTTTCAATCTCTTGTTCT 1635 30 100.0 36 .............................. AATAACTCTGGGTCGTCCGGTAGCCTTGCAATCATG 1701 30 100.0 35 .............................. GCAAACGAACAGGTCTCAAAGTGCGGCGCAGAAAT 1766 30 100.0 35 .............................. GAATTTATAAGACGATCGCTCGCATGTATAACCGC 1831 30 100.0 36 .............................. TTTGGATACCCAACAGGGACAACGCAGCGATTCGGA 1897 30 100.0 37 .............................. ACTGGTTTGTTCACACTCCGCGATGAGCTTCTGAGGA 1964 30 100.0 35 .............................. AAACGAGCCGCGAACAGGAAAAACGCCGACGATGA 2029 30 100.0 41 .............................. CTTCTGCTCCTAAGTGTCCGTATTGCTTGCCTATTTTGTGC 2100 30 100.0 39 .............................. AATTCTTCTTTCGGTTGTCTAATTTGTCTCCGTTAATGT 2169 30 100.0 37 .............................. CCATCCTCCTGTAATTATAATATTGTTGTTGTATCAC 2236 30 100.0 37 .............................. ATCCCAGATCGGATTGTCGCCAGGCTTGTCCACGCCA 2303 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 33 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGGG # Right flank : ATCAGTCACATCGAAAATGGCGAAAAGAAAAATCCAGGTTTTTATCGTACCTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //