Array 1 4877-5925 **** Predicted by CRISPRDetect 2.4 ***
>NZ_ORYW01000185.1 Xanthomonas fragariae strain ICMP 6278 isolate ICMP 6278, whole genome shotgun sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
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4877 28 100.0 32 ............................ TTCGCGGGCTAACGTCGGCATAGCAGCAATGA
4937 28 100.0 32 ............................ AAGGCGTCACGCCCGGAACGCTGATGCCGTTG
4997 28 100.0 32 ............................ ACGATGCTGCCGCTGGTGCCGAACACGTAGGC
5057 28 100.0 32 ............................ AGGAAGATCGCCAGGAGGACCAGGACGGTGAC
5117 28 100.0 32 ............................ GTCCTCATCTACACCACGCATCCCTACATCGT
5177 28 100.0 32 ............................ ATGAGCGGCACCGCTCAGATAGGCAATAACAC
5237 28 100.0 32 ............................ GTTGCCGGGTTGCCCGGTGTATAGCTCGATTG
5297 28 100.0 32 ............................ ATCACGGTCAGTACGGCACCGCCGATCGCTGC
5357 28 100.0 32 ............................ ACAAAGCGCGATGCACCGCGCTGGGAATCTCC
5417 28 100.0 32 ............................ AATCACGGTGTGGTAGGTGTCGATGTGGGAAA
5477 28 100.0 33 ............................ ATGGTCATTGCGATCAACCTGTTTACGTTCTTC
5538 28 100.0 32 ............................ GAAGACGGCAGTGTCATGCAGTTGCAGCAGAT
5598 28 100.0 32 ............................ CTTGTATTGGGCTGTGTCTACTTGAATTGAAG
5658 28 100.0 32 ............................ AGTACCAGGGCAACGTCCAGTGCGCATGCAAT
5718 28 100.0 32 ............................ GCTAGCGCACTGACCATCACCAGGGAGACAGG
5778 28 100.0 32 ............................ ACCACAATGTTAGAGGTATCGATCCACTGCAC
5838 28 100.0 32 ............................ ATTGCGTCATGATCACAGCATCGCCGCCATTC
5898 28 100.0 0 ............................ |
========== ====== ====== ====== ============================ ================================= ==================
18 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT
# Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACGCCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTC
# Questionable array : NO Score: 6.26
# Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37
# Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41
# AT richness analysis in flanks prediction: F [65.0-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.51,0 Confidence: HIGH]
# Array family : I-F [Matched known repeat from this family],
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