Array 1 61053-60157 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJQ01000037.1 Gallibacterium anatis 4895 contig000037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 61052 32 100.0 34 ................................ ATCGATAGATCGCTTTGCATTACTCTATCAACGA 60986 32 100.0 35 ................................ ACGTATGAAAGCAAAGAAAATCAATGTGATTGTAC 60919 32 100.0 34 ................................ GTTGCCAGCTATGCTATAAATTCACACAAGGAAC 60853 32 100.0 34 ................................ TTTGACTACGATTGGATGGAAAGCGATGACCAAC 60787 32 100.0 36 ................................ AAAGAGTTATCAGAAAAAGAACGTGAACATATTCAA 60719 32 100.0 35 ................................ ATAATAAAATGGTCGCTCGATTTCCACCTACGCCC 60652 32 100.0 35 ................................ TAGATATAGCAGAATGTTAGAAAGCCTGAATAGCA 60585 32 100.0 33 ................................ CAATCTCCGCTTTGCTTATCCTGCCACTTTTCA 60520 32 100.0 35 ................................ TTGCCTTAGTTATTGCTTACACGGTAGCTGAAGCG 60453 32 100.0 36 ................................ GCCAAAAACCTTTATAATATTTTGTTCTTTTCCTTG 60385 32 96.9 35 ...........C.................... AATCATCTGACAAAGTTCATCACAAAAGCCGTCAA 60318 32 96.9 33 ...........C.................... AATCTCTTTAAATCCATACGGTTTTAATTGCGG 60253 32 100.0 33 ................................ TATATTCCAGCAGGAATATCAGGATCTTCTCAA 60188 32 87.5 0 ...........C...............T..GT | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.7 35 CGGTCGCCTCATGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGGGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCTGTCTTTGAATGTGATATTACTCCGGATCAATGGATTAAACTCAAAACTAAATTACTAGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCATTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAAGGGAAGTAAGCCTTTATTTTTGCTAATGTTTTAGTATATGCT # Right flank : CAATACCAAATCATCTCTGTTGGCATACATCTCTTTTTAACAATTAAAATCCACTAAAAATGTCTTCATTAATAATTACCTAACACATTCAAAAAATCTGCTACTGTGTGGAATGAGCCAAAAACCAACAACAGATCCTCTTTTTGTGTCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACCGCTTGGCTTTCCAATAAATTATGATTTTTTTCTGCCACTAATTGTAACTTCCGTTGTAATTCAGTGGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTGCGGTATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTCTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCATGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 301-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJQ01000069.1 Gallibacterium anatis 4895 contig000069, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 300 36 100.0 34 .................................... ACAAAATGACTAAACAATTTTATTCAGAAGCAAA 230 36 100.0 36 .................................... TCACGAAAACTGCCATATTCAAACACGCCGGATGGG 158 36 97.2 35 ................A................... GGCAAGTAGTGAAGTATTGCTAAAAAATCTGGACA 87 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 4 36 99.3 35 GTCTCAATCCCTTTTAGAACAGGGCTAGGTTAGAAC # Left flank : CAGGGCTAGGTTAGAACTAAGGGGGCTTGAATGAGTACTAAACGCCTTAAAA # Right flank : CGTTGATGCGGATGAGGTCTATTCATACCTTTCAGACGTCTCAATCCCTTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATCCCTTTTAGAACAGGGCTAGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 21411-21584 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJQ01000077.1 Gallibacterium anatis 4895 contig000078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================== ================== 21411 31 100.0 43 ............................... ATAATTGCTCGTCTGTAATTGAGGAATGGGAAAAAATTGTCTC 21485 31 100.0 38 ............................... AAAATGGCTTATACCAACAAGCGATAGACCAATGTCTC 21554 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =========================================== ================== 3 31 100.0 41 AATCCCTTTTAGAACAGGGCTAGGTTAGAAC # Left flank : AAATAGATCTAAATAACCTGATTTATATTCTCCGCTGTTATAATCATAATATTCCACCGGGCCTTCACCCAATCCTTGATGATCATAATGTTCAACTTCAAAATAAGAGCCGGTATCATAATTATATCCCGTCCAACAAAATGCCGGCGAAGCGAAAATAATAACTATAGTAAATAATAAAAGATGCATTTTATCTTTTATCTGCCTCCCGGTCTTCTATCCGCAGCACGATCTCCGCAACGGGAACCGTCTTTTGCAGTTTGCCAAGAATAATCACAAGAACCGGCATATACAGGCGCAGTAACGGTAACCGCAAATAAAGTAGTTAAAATAATTGCAATTGTTTTCATAAAATTTCTCCTAAATTTATACACTAAATATTTAATTTCATTATTACTTCGTAATAACAAAGCTAAGTATATATAACCGTTACTATAGATAGAAAAATTTCAAATTTGATATTTCCTTAAAAAATTATCATTAATGTCTTTTATAAAAGT # Right flank : CGACTTATGACTCAGGTAATGCGTGCTGATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTTTAGAACAGGGCTAGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.06%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1623-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJQ01000010.1 Gallibacterium anatis 4895 contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 1622 36 100.0 33 .................................... TATCCAAAGCGGTTTGAATAGCGTCTTTGAACG 1553 36 100.0 36 .................................... ACCAGCACTCTTTTTATCCATCTTCTGCAACGCATT 1481 36 100.0 35 .................................... GGCAGGATATGGTAATTACTTTTTATAATATCAAT 1410 36 100.0 35 .................................... ATATACGTTAGACCTTTTTTGATATAGTCTAGCTT 1339 36 100.0 35 .................................... ACCGCTGCCTCTTTATCTTCAACGGCGGGGTTAAA 1268 36 100.0 34 .................................... ATTAGAAACTGTTTTAACATTTTTAGTTTAGTGT 1198 36 100.0 35 .................................... TGACTCGAAATCCTCGTAAGTCATTGCATCTTTAT 1127 36 100.0 33 .................................... TAATGGAATATGCATTATTGCAATTATCCATTA 1058 36 100.0 31 .................................... ACAAAACAATTATATTTTGAATTGTATATCG 991 36 100.0 33 .................................... TGAGAATATCCTTTATATCCGCCCACTTGCTGG 922 36 100.0 35 .................................... ACTTCAACAGAAACTGACCTATGCAAGCATCAACT 851 36 100.0 36 .................................... TCTAAAGCTACATTTAAATCGTTGCTATTCCATTGG 779 36 100.0 34 .................................... ACACTTTGATATTGGTGTAACCTTTATACCCTCC 709 36 100.0 35 .................................... CGGCGTAACATTTACATTTGAGATACGGTATCTCA 638 36 100.0 36 .................................... GAAAGGGTTAAGATTGTATTGATCCTTTCTATATTC 566 36 100.0 35 .................................... GTCTTTGACCGCTTCAAAGATTAGCGTATAGCCCG 495 36 100.0 33 .................................... TAAACCACCAGCCCCGATAAATACTTCTGTACT 426 36 100.0 34 .................................... AAAACAAGGTTTTTCGTAATTCCTCAAGCCCAGC 356 36 97.2 36 ...................................T ACGTTTTCCTTAACTCACTTAGCGACTCGTTGAGGA 284 36 91.7 35 .....G.............C...............T TGATGTGTACTTCACCATTTTTATTTGTACGGTAG 213 36 91.7 32 .....G.............C...............T TGAAAAGGATTTTGTACCCACGATCCATCCAA 145 36 91.7 73 .....G.............C...............T CATTCTGCAGGGTTGTCAACGTATTGATACAACATGTTCTAACCTAGAGACCCCCGCTAGGGTTAACATTTCC 36 36 97.2 0 ...................C................ | ========== ====== ====== ====== ==================================== ========================================================================= ================== 23 36 98.7 36 GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Left flank : GAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAAATGAAACAGTTCGTCATCGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTATTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCCATTGCACCGGTGATTGAAACAATTAATAGCAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAGGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCGCTACCAACCAGACTATAATTTTGCTTAAATAATAATCATATTGGAGGTTAACTATGCAGTCATTTATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACAGTGTCGGGA # Right flank : C # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //