Array 1 522120-523719 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML219773.1 Halorussus sp. HD8-83 Scaffold1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 522120 30 100.0 36 .............................. CGAGTCGCCGACGTCCTTCCCCGCGAGGTCGAGTAC 522186 30 100.0 35 .............................. CTGTACCACGCCACCCCACGTTTATCAACGTAACC 522251 30 100.0 37 .............................. ACCCGTCGACCGACAGCGACAGCGACGGATCCGAGTC 522318 30 100.0 37 .............................. CCGCTGCATGAGCGACAACTTGGTCAACCCGGCCGAC 522385 30 100.0 36 .............................. TCGAATCGCAACCCGGCCGTCGCCGTCCGGGACGGT 522451 30 100.0 35 .............................. TTGATGTCGTGTCGCTCCGTCCACGTCTCGCCCTC 522516 30 100.0 36 .............................. GAGCAGGTGGTCGATGATGGTGGGGGAGTCGTCGAA 522582 30 100.0 36 .............................. GATGGGTGACGCGCTCCGACTGACGGAGAACTTCAC 522648 30 100.0 36 .............................. CTCGCGGATAGTTCGCCAGCCACTCCAACCGGACTC 522714 30 100.0 36 .............................. CGGGGCCGTCCTCGCGGCCCTCGTCGCGCTCGCGCC 522780 30 100.0 36 .............................. CGGGGCCGTCCTCGCGGCCCTCGTCGCGCTCGCGCC 522846 30 100.0 33 .............................. TGCGACGCGAGGCGGGGACGTCGTCACATCCCA 522909 30 100.0 35 .............................. CCGAGAGCGGCGGCCGCCGCAACCGGTGCAGAACT 522974 30 100.0 35 .............................. TCGCCGCCCGTGAGGGCGAGCCACGACCATGCGGT 523039 30 100.0 36 .............................. GCGCATCACCGAGACGCCCGACACCTACGACCGCGC 523105 30 100.0 37 .............................. TCGGTTTCGCGTGGTCGGGAATCGGAGAGTTTTCGAG 523172 30 100.0 34 .............................. GAGAGTGCGTCTCGGTCACGATTACTCGCACGAT 523236 30 100.0 35 .............................. GGCGTTGCCGGGGCGGCGATGGAGGCGCTGGTCGA 523301 30 100.0 35 .............................. GCAGTCGTAGCTCATTCCCAGACCCCCGTTTCGCC 523366 30 100.0 36 .............................. ACGGTACTGCTGGAGTTGCGGGCGAACGCCCACGTC 523432 30 100.0 35 .............................. TCGAAAACCGACCGAGCGCAACTGTCGTGGACAAC 523497 30 100.0 36 .............................. CGAGGTTTCGATTCCGGCCTACCAGCAGTTCCAGAC 523563 30 100.0 32 .............................. GATGCCGGGCGGCGACCGCCGTCGAAGCCGAC 523625 30 100.0 35 .............................. ACGGAACTGCTAGAGCACAGTCCGGACCCGTCGAC 523690 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 100.0 35 GCTTCAACCCCACGAGGGTACATCTGGAAC # Left flank : GACGTCGAGCACTTCGTCGAGATACCACAGGTAGTACAGCAACTGCATCCGGGCGGGCTTTTCGAGCGTCGAGGAGACCTTAACTTCCATCACGTCTCCGGAGTCGAGCAGGTCGAGTTGAATCCGACCGTTGATCTGGTACGACCGTCGCTGATCGTCGTAACTCGTCTCGTCGACGTGCGTCCCGCGTTGGATGTTCGTGGTTTCACGGTCGATGTCCAGCCCTCGAGACATGAACCACAACTCGCGCTCGCAGACGTGGTAGTATTGGACCATCAGCCCCGTAATCCGAACTCGCGGTTCGCGGTAAGGGTCGCGCTCGGCAGCGAGATACCTGTCGAGTACGTCGCCTTCGTTGGTCCCCGACATTTGAATTCAAAGACATATCTGTACGATAAAAATTCTTCGCAAGGGTTGGGATCGCCGACGGACAGATCTTCATTTCATTTGGATACATCTGGAACCGCCAGGGCCACGCGTCGGCCCAGGGCGGTATAGCG # Right flank : CCATGCCGGATTTCCCGGCTGTAGCGGTGCTCGTGGCCGAACCCACACAAGTGTTTCCGTCGACCGCCAATTCACCTCAAACCCCCGGGAGGTCGACGGAGAAGAGAATAACTAGAACGTGAATCGACTCGACGGACCGTCATCTTCGTCCGCAACGAAGCCACCGCCGTCGAGTTCGTACGCTCCGTAGCCTTCGTTCCCGCGATGGACGAACACGTCGACTCCGTCGCCGTCCGTTCGCGGGGAGCGATCCACGCGAACGTGGGTCGGCAGCGACTCCTCCAGATCACGCACCGGAATCGACACTCGAAGGTCGGCTAGTTCCGACAGCCGGCCGAACCCCTGGCTCGCATGGCGCTCGAACGCCTCACCAAGCTGGTCGATGCGTTCGCGGTCGGCGTCGGTGACTGCTACGATGAGGTCGACGGTTTCGTAGCTCTCGTCGATGAGCGACTGTCGGCCCAGTTCCTCCGCCCGACTTTCCTCGATCATCTCGACCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACCCCACGAGGGTACATCTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 532097-533309 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML219773.1 Halorussus sp. HD8-83 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 532097 30 100.0 36 .............................. TGGTTCCGCGTGTGGACGTCACCCCACGACGGCCCG 532163 30 100.0 37 .............................. GAGTCCGGCTGGGGGCCGTGGAGGACGGTCCGCGAGC 532230 30 100.0 33 .............................. GTCTCACGGTCGACCTTCGTTCGGAACCGAAGG 532293 30 100.0 36 .............................. TTTTGCATCAAATCGTTCCGTCGGTTCCGAGAATGC 532359 30 100.0 36 .............................. GGACATCAAGTGGACTGAAGACGAGAACGGCACCCA 532425 30 100.0 35 .............................. GGCATCCAAGACCCTGATGGCGATTTCACCCAAGG 532490 30 100.0 35 .............................. CTCGAGGACGTCGACGTCGCGACCGACGGCGGCTC 532555 30 96.7 36 .........T.................... TCGCTCACCGAGACCGCGACCGGCATCGTCGGCCCG 532621 30 100.0 35 .............................. GACGACCGAGGCCTCGCCGTCGCCCTCTGCGGCGT 532686 30 100.0 36 .............................. GAATTCGAACCGGACCCCGACTGGTGGGACGAGGAC 532752 30 100.0 36 .............................. ATCGGGGACGAGGCTTGGCGGGCCGACGCCGAACAC 532818 30 100.0 36 .............................. CTCCGGACGGACGAAGCGACCGGCCAGCAGCACCTC 532884 30 100.0 36 .............................. GTGAACGCGGTGATGCGTGGGGACGGCAACCCGGTG 532950 30 100.0 34 .............................. TGGTCTAACGATGACTGAAACGGTCAGCACGCTG 533014 30 100.0 35 .............................. ACACCCAGTACTGGAGGGGGTCATCGTACTCCGCG 533079 30 96.7 36 ..............T............... GGCGGGATGCAAGGACAGGGCGCTCACGCGGCCATG 533145 30 100.0 38 .............................. ACCGGCTTCTTGTTCGCGTCGGACTGGGCGAGACCGGC 533213 30 96.7 37 .........A.................... GAGCTGCGAGGAGTACAACAGCCCCGACTACGACGTT 533280 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 99.5 36 GTTCCAGATGTACCCTCGTGGGGTTGAAGC # Left flank : GGTCGACGCGACGAGGACCGAGCGCTCGTCGTCCTCTTCGATGTCGCCCCACGGGAAGACGTTCGAGAACGAGAATCCGATGGGTCGCTCGGCGTCGTGGAGTTCGTCGTGTTTCGTGCCCCGAAGCCCCTTCCAGAGCCGCCCCCGAAGCTTGTGGTGGTAATCGTTTTGGTATGCCGCGTCCGCCCGAGCGCGTAGGCGTATCAGGAGGCGCACCGCACGCACCTCCGCGTATATCCAATTAATTCAACCATTGGATGCACCTCACGCTGTTAGCGGAAAGAATATGAATGTTTCGCACGTCCAAGAGGTCGGGGCATCTCACGAGCGTTCGACTACAGCAGCCGTCGAGTCGTGTCATGGTATCCGATACATTACTCCGTTACCCTGTATTCTCAATCTCCGTCGACCCCCTGGGGGTTTGGGGTGAATTGGCTGTCGACGGAAACACTTGTGTGGGTTCGGCCACGAGCACCGCTACAGCCGGGAAATCCGGCATG # Right flank : CGTCCACGACCCGTGGATTCCCAGCGAGTCCACTCGTTCCTCCCTCGCTTCGCTCGGTTGAGCAGTCGCGGACTCGCTCCGGAGCGCGGCGGCTTGCGCCCCCGTAACTCCGTCAGACGCCCGTCGTACGGCGAAACACAGGCTTTACCACCCGCGACCGCAAGGGAACGCACGATGAGTCTCAGGTGCTCGCTCCTCGGCCACAGTTACGGGGAGGCAGAAATCGAACGCGAACGCGAGGAGCAGGGAAGCGAGGTGGTCGTCACCGTCCGGGAGTTCGAGGAGTGTGCGCGGTGTGGCGACCAGAACGTCCTCAGCGAGAACAAGGAGGTCACCGCCATCGAGTCGCCCGCACCCGACCTCGAATCGGCGGAGTCCGACCCGGACGTGGGCCGGAGTGAGGCCGCCGGCGACGCCACCGGGGCCGCCGGCCGGGCCGGCGTGAGCGGCTCGACCGACCCCGAGGTCTCCGCCGCGGACGACGGGGCCGAGATCATGAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGATGTACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1152936-1154865 **** Predicted by CRISPRDetect 2.4 *** >NZ_ML219773.1 Halorussus sp. HD8-83 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1152936 37 100.0 34 ..................................... GCGGCGGCTTCGGTCTCGACCAACTCGGAACCGG 1153007 37 100.0 34 ..................................... TTGGCACCATCTATGGTGTCCCTGTCGCTGAAAC 1153078 37 100.0 36 ..................................... ATTGATTCTGGGCCGTTCCCGTTCACGTACCGGGCG 1153151 37 100.0 33 ..................................... TGCGTTGCGAGAGCGTTAACGTCACGGCGGACT 1153221 37 100.0 37 ..................................... CGCTCCTAAGATGCCCACCGAGACCTTCCAGTATACC 1153295 37 100.0 37 ..................................... TTCTCGTCGGCGTCCTCTTCGTCGAGGACGACCGAGA 1153369 37 100.0 35 ..................................... TTCACCGCTCCGGTCGCGTCCATCTCCGCCCGACT 1153441 37 100.0 38 ..................................... GCCGATGCTTAGCCGGCTCCGCGACCGCTACCGGCAGT 1153516 37 100.0 35 ..................................... CGCGAGGCGTGGATAGAGGCCGGCGGCTGGCAGGG 1153588 37 100.0 38 ..................................... GAGTAGCCGCTCCCGTGACTGCTGAACTCGTCCAAGAC 1153663 37 100.0 35 ..................................... GTGACAGTCGCACCAAGGTTCTCGATCTCGTGAAT 1153735 37 100.0 37 ..................................... GCGTTCGGGTCGACGTAATCACGCTCGACCCGCTCCA 1153809 37 100.0 35 ..................................... TGACTGACCGCCGCCACTGAACCGTATGGTAGGGG 1153881 37 100.0 37 ..................................... TAGGGAACGCTCTTGTGAATACCCCAAACTTCGGAGT 1153955 37 100.0 34 ..................................... CGACGGATGTTGCGGTCAGCTCGGAGTGGGTCGC 1154026 37 100.0 37 ..................................... TGGAGGTCACGCCCCGACACGTCGTTCATGTTCGTGA 1154100 37 100.0 38 ..................................... AGGCCTGGCCCGACCCCGGACCGGAGGCTTCAGCCGAT 1154175 37 100.0 37 ..................................... TGGGCCAAGACGTACCACGAGCGTCGCGGCCAGCACG 1154249 37 100.0 35 ..................................... ACAAGGACACCCTCGGCGGCCACGTCGACCGCTCG 1154321 37 100.0 36 ..................................... AACTATCTGTTGCCGAGCCACATCGGTCTGCATAAA 1154394 37 100.0 35 ..................................... ACGAGGTCGACGTCGCGGTCGAGGTCCTCGCACGC 1154466 37 100.0 34 ..................................... TTTTCGACGAACGTTACTGACGCGTCGGGCGCGT 1154537 37 100.0 37 ..................................... CTTAGAAGCCGAGTTCGGCGGACTCACGGACACGTCG 1154611 37 100.0 36 ..................................... GTTGCGAGGAGGGTTCGTCGTTGCATGCCGGTATCT 1154684 37 100.0 37 ..................................... GTGTTGCTCGTGTCGATGAAGTTGTTCGCGAGACCGA 1154758 37 100.0 34 ..................................... AGGTCGCGGGCTACCTCTGTGGCGAGTGCCGGCA 1154829 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 36 GTCGCAGAACCCAGAAAAGCCGCGAAGGCATTGAAAC # Left flank : CCAGGTCGGGTTCGACGCGGACCTCCGGACGCTTGGCGCGTCGTGGAACGCGAGCATGTTCGACCGGGACGTCTACAGCGTCTTCCTCGGCGGCATGCACGACCCGGAAGTGCTCGACGAGAGCGACGACCGCATCGGCGAGATCGCGGCCGCGGAGTTCGAGACGGTGACGGGCGCGCCCGCGGAGGTCGTCGACGTCCACCGTCTCGAACGCGGGTTCCCGGCCTACGACGACTCGTGGGCGGCCCTCGACCGCGTGGACACCCCGACGGGCGTCCGGCTCGCGACCAACTACACCGCCCGGATGGGGGTGCCGAGCCGGATTCGAGAGGCCGCGTCGCTTGCCGAGGAACTGGCGGACTCGTAACAGCACGGGGTGCTCGCCCGCAGTCTTCGTGGACCTTTTTAAATTGTCTGTACGGCCCCGGTCCACGAATTCCGGCGTGGATTTGGGGCCGTGAGAAAGCTTTATTGGAGCGCTGGGCGAAATATCACCCCCT # Right flank : CGACGCGACGGTCGAGAAGGTCGAGGTCCGCTTCTACTGTCGCAGAACCCTGGCGAAATACTCGAGAAGTAGCAAAATCAGACGCTCGGAGCCCTACCACTCCCACTGCTTGGCGGTCTCGACGAACGCCGCCGCGTTCTCGACCGGCGTCTCGCGGTCGATGCCGTGGCCGAGGTTCAGGATGTGACCTTTCGGGCCGGCCTTCTCGATGACTTCCGCGGTCTTTTCGCGCACGAACGCCTCGTCGCCCAGCAGGTACGAGGGGTCGAGGTTGCCCTGCACGGGCATCTCGCCCAGTTGCTCGCGGGCGTCGCGCAGGTCCACCGTCCAGTCGAGGCTGACCACGTCCGCGCCCGAGTCGGCCAGCAGGTCGAGTTTGCCGCCTGCGTTGCGCGCGAAGACGATGGTCGGCACGTCGCAGGCCGCGAAGATGCGGCGGTGGAGCGGCTGGAGGAACTCCCGGTAGTCGTCGGGCGTCAACAGGCCGGCGTAGGTGTCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAACCCAGAAAAGCCGCGAAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 1 275295-274519 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIU01000004.1 Halorussus sp. HD8-83 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 275294 37 100.0 37 ..................................... TCGATGAGACCGGTGGTCAGACCGAGGTCGCGGAACG 275220 37 100.0 41 ..................................... ACCGACACTGTAGTCGACGCCCTCGCCGACCGGGGGGTCGC 275142 37 100.0 36 ..................................... AGGTCGACGGCGTCATCGAGGTCTATGAGTTTCGAA 275069 37 100.0 37 ..................................... AAGTCGTTCCGCGACTTTTCCTCGCCGTAGTGCATCG 274995 37 100.0 36 ..................................... ATTGACGAGAACCGGCCGACGCTCCAGCCCGAGACC 274922 37 100.0 37 ..................................... AGGTCCGACGAGAGCGAAAGGCCGCCGTGCGCGCCTG 274848 37 100.0 36 ..................................... CGTTCCGCCCACGAATTCGTCTTCCATCGGGTCGAA 274775 37 100.0 36 ..................................... GCGGTCGTCGACGACACGCCCGAGCACGTTGTTGAA 274702 37 100.0 38 ..................................... TGGGTAGCCGGGTCGGCGTCATCAAGGGGGTTCTGTAA 274627 37 97.3 36 ......................C.............. AGGTCGAGTCCGAGTTCGACACGAGCCGCTTCCAGA 274554 36 83.8 0 ...........-..........C.......G..G.CG | ========== ====== ====== ====== ===================================== ========================================= ================== 11 37 98.3 37 GTCGCAGAACCCAGAAAAGCCGAGAAGGCATTGAAAC # Left flank : GACGGGACGGTCGTGGTCAACTTCGGCGGCGGTGCCCGGGAGGTGTTCCTCGCGCTCGCGACGGCGACGCTCGCGCACCTCGACCGGGTCGACGAGACGCTGTTCTTCCGGGACACCGACCACTCGGTCCGCAAGTGGGAGCTGCCGAACCTCGCCGCGAATCCACCGGACGAGACGACGAAGACGTTGCGGACGCTCGCGAACGTCGAGGGCCCGGTGTCGATATCGGAGCTGGCCCGCGACAGCGACGTCGCCACGAGTACTGTCGGTCGACACGTCTCGAAGCTCGCGGACGCCGGAGCCGTCAGAACCACGAACGCGGGCAAATCCAAGCAGGTCGAACTCACGCTGACGGGGCGACTCCTGCTTCGAACCGCGTGACCAGCACGGTCTTCGTGGACCTTTTTAAATTCCCTGTACGGCGCCGGTCCACGAACGCGGCCGTCGCGTAGACGACAGCAGAAACATTTATTGGGGCTGTGGCCGGATTTTCACCCCCT # Right flank : GATGGGATTCGAGTCCGGAACAGTCCGTCCTTCACTCCGGCCGGTCGCTCACTGCGCGGACTGCGTCTAACAGGCGCTCAAATCCATTTGCGTCGAGATTCGCCGCTCGCGGATTTGGCGAGCAGATGAACTGCTCGCCGTAGTGGTCGCAGGAGAAAGCGGGCGGCATGGGATTTGAACCGGAGCCAGACGGTCCTGCTCGTTCGCTCCGCTCACTACGCGGGCTGCGACTGGCAGGCGTTCAAATCCATTTGCGTCGTTGTTTGTCACTCGCGTCTGTTGCGAGCGCACGAGGCGCTCGTAGGGTACTCGTGACAAAAGAGCGGGCGGCATGGGATTTGAACCCATGACCTCTTGGTCCGGAACCAAGCGTTCCGTCCGCTGAACTAGCCGCCCTCACCCGAGCCTACTCCCCTCGCGGGTTTAACCGTTTTGAAAACCGCAACTCAGTCCTCGGCTACCGTCGGCTCGGAGCCGACCGACGAGCGTGCGCCGTCGAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAACCCAGAAAAGCCGAGAAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 2 285005-287752 **** Predicted by CRISPRDetect 2.4 *** >NZ_SBIU01000004.1 Halorussus sp. HD8-83 Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 285005 37 100.0 35 ..................................... AGCTTGAAGGGTTCGAGGTTCCTGACACCTCGGAC 285077 37 100.0 35 ..................................... AGGACGTCATCGACCCACCTCCGAGGCCTTGCCGC 285149 37 100.0 39 ..................................... TCTTCAACTCGGCGGACATTACGGACCTCAAGTACGAGT 285225 37 100.0 34 ..................................... TATTACATTGGTGTTCACTCCTATACCCTTTCGG 285296 37 100.0 37 ..................................... AAGTAACTCCCAATGCCTACAATTATAGCCCCAAGTT 285370 37 100.0 36 ..................................... CCTACGTGCGCCTACGTGCGCGGAAGGGGATTATCC 285443 37 100.0 37 ..................................... GGGGAATTGGTGAAACTGCAAGTCAAACCTTCATGGG 285517 37 100.0 36 ..................................... ACGGAGGTCGCTGTCCGTCGGTATCGTGAGAACCAC 285590 37 100.0 44 ..................................... AGCAGAACGAGCAGCAGGAGACCAGCACTCAGCAGGGAGGAAGC 285671 37 100.0 37 ..................................... GCTATCTCGGTCGGGTCGAGTGAGAAGGTAAAGCTGC 285745 37 100.0 36 ..................................... AATAGTTACGACCGCGTCCTCGTTGATTTCGAGTGG 285818 37 100.0 37 ..................................... AAAGTATCGGTAACTTCATCGATTTCGTTATCTTCTA 285892 37 100.0 37 ..................................... ACCTGCCGAACGGTGGCTGGAACGGCGGCGGCGACGG 285966 37 100.0 36 ..................................... GAAATACTACCGATACAAAAGAAATAACTCTTGTAA 286039 37 100.0 37 ..................................... AAGGAATCGGCGCTCGTCGAGAAAACGACGCGACTGG 286113 37 100.0 35 ..................................... GGCATTAGGCTCGGCCTCCGTCGACTGCGTCGAGT 286185 37 100.0 37 ..................................... CGAGCGTTCGTCGACTACCAGCCCCGACCGAACGACG 286259 37 100.0 35 ..................................... TCCGAGTATGGGACCAGACGAACGGAACCGAGTAC 286331 37 100.0 36 ..................................... GGTTCGGCCTCGACCAACTCGGAACGCCCGCGCTGG 286404 37 100.0 37 ..................................... TAATGGATTAAGCTTGTTGTGCCTTACCATTCCGTTT 286478 37 100.0 36 ..................................... TAGCCGAGAGAGTTCAGCGCGTTCACCCATGCGTCG 286551 37 100.0 35 ..................................... TTGGAAGCGTTCGCAGTGCTGGCAGCGGTCGCCGT 286623 37 100.0 37 ..................................... AGCCATTTAAGCAAATCACCATAACTATGCAAATATT 286697 37 100.0 38 ..................................... AGCAGTTCGACGCCGGGGCGCTGGCCGACATAGCGGAG 286772 37 100.0 36 ..................................... ACGGTTGCTTCGGGGATGGCGACGGTGAGCGGCTGT 286845 37 100.0 35 ..................................... AGAGAGAGGCGCTAACGCGTAGATTTAGTTCGGGG 286917 37 100.0 37 ..................................... GTTCACCCTACTCAGACGTGCGTGCAACCCGGTTTCG 286991 37 100.0 36 ..................................... GTCGCGAGGTTGACGACGTGCTGCGGGACGCGCTTC 287064 37 100.0 35 ..................................... GGTTCAGGAGCCGTTCGCGAACGACTACGCGCTCC 287136 37 100.0 35 ..................................... CGGTAAACGCCGCGAGTGTAGGCCGGGTTCCGGAA 287208 37 100.0 37 ..................................... AACTGAACGACGCTATCATGGCCGCCGACCAGGGCCA 287282 37 100.0 36 ..................................... GACGTGGTCGTGGTTCTGTTCTCGTCGCTCGTGTTG 287355 37 100.0 36 ..................................... ATGACGAAGTGAACCAACACTGGACCTACGTCTGGG 287428 37 100.0 36 ..................................... ACGATGGGCGGGCCGCGCTCGCCGGCCTCGCGGTCG 287501 37 100.0 33 ..................................... TTGAATTCGGACGCGAACGCGTCAGCGTGCTGG 287571 37 100.0 37 ..................................... AGTAGCTATCAGTCGGTCGTGTCGGATTACGCAAATA 287645 37 100.0 35 ..................................... TTTATCTGTCGTTGCGTCCGCGTCGACGAGCGTGT 287717 36 89.2 0 ...................T.A......T.-...... | ========== ====== ====== ====== ===================================== ============================================ ================== 38 37 99.7 36 GTCGCAGAACCCAGAAAAGCCGCGAAGGCATTGAAAC # Left flank : CCCGACGGAAGGCGATTCGTCAACAGGCAATCCTGTTGCGGAAGGCCATTACGGGCGAGTTGGACGAGTACCACGCGCTGACCATGTCCCGGTGACGACACACATGCGACTGCTCGTAGCCTACGACGTCAGCGACGACGCGAACCGCCGGCAGGTGTACCGCACCCTGCAACGGTACGGGGCGTGGAAGCAGTTCAGCGTGTTTGAGGTCGAGGTGACCGACTCCCAGCGCGTGGAGCTGGAGGACGCGCTCGAATCCCACATCGAACCGACGGACGGCGACCGGATTCGGGTGTATCGACTCTGCGAATCGTGTCTGGACGACGTGACCGACATCGGGAACGCCGAGACCGACGACTCCGCGACCGTGATCTGAGGCTCCCGACCCCGACTTCATCGACCTTTTTAAATTGTCTGTACGGCCCCGGTCCACGAACCGCGGCGTGGATTTGGGGCCGTGAGAAAGCTTTATTGGAGCGCTGGGCGAAATATCACCCCCT # Right flank : CCGTAACTGCGCGAGCGCGAAAATCGGGGTGACCGTGACCATCACAATCTATACCCGTTTGAATTCACTATGAATTTGTATGAGCCGGACATCCATCCCCGTCGATTCAGCGACGAAGGAGCGACTCGACGAACTGAAGCGAGAAACGGAGACGTGGGACGAGTTCCTCAACCGAATTTCCGCCGACGAAGACCCGATAAAGTTTGGTGCATGGTCGGACGAGGACGCAGAAACGGCGATGAAGCGTCTCCGTGAGGGACGGGAGCGCGACCAGACATGACATTTCTGGATACCTCGACGATAATCCAGTATCTGAAAGGCGACGAGCGCGTTCGTGAGTACATCGACGGGAGAGAACCGTGGTGGACCTCGACACTGTGTGCGTTCGAAGTGGTCCAAGGCCGATTAGGCTCCGGAACGACAGACGTCGAAGCGGTCCGCCAAGACTTCGCCGGAGTCCAAACACTGGACCTGAACGAGTCGATTGCACTTGAGGCTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGAACCCAGAAAAGCCGCGAAGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //