Array 1 34568-34211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDLR010000011.1 Fusobacterium ulcerans strain DFI.2.87 HPPJLFFL_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 34567 29 100.0 38 ............................. TTTTGTTCTTGATTAGACTTCTGTATAGTGTTAGCTAA 34500 29 100.0 36 ............................. TGAAGAAACTTAAAAAATTATATACAGAAAAGCAAA 34435 29 100.0 36 ............................. TAAAAAGACATTGAAAATAAAGAAGAAAAAAGAAAA 34370 29 100.0 38 ............................. AAAGAAAAGAAGGTTGAAATATACCTTCTTTTTTATTT 34303 28 79.3 37 T....A..T...-..A.A........... TCTTCTTTTCATTTCCTCTTTATTCAAAGTTTTCCAG 34238 28 86.2 0 ..C..A..T......-............. | ========== ====== ====== ====== ============================= ====================================== ================== 6 29 94.2 37 ATTGACTAGTAACTTGATAAGTTTTTAAA # Left flank : CTATACCTGCTCCAGTAATGGGAGGGGTTTCAATAATATTGTTTGGAATGATTTCATCAGTAGGAGCAAGAACATTAGTAGATGCAGGATTGGATTTTTCTAACTCAAGAAATCTTATCATAGCATCATTAATATTTGTATTTGGAATAGCAGTAGATAATATTGTTATCTGGAAAACAGTTTCTCTTTCTGGGCTTGCACTTGCAGCTCTTGCAGGAGTAGTTTTAAATAAGGTTCTTCCTTTAGATAGAGAAGTAGCAATAAATAAAAAAATAGATTAATTTGAAAATCCATTGATCATGCAAAATTTATGATTGATGGATTTTTTATTTTCCAAGGGAAAAGATACCAATGAAAATTAAGTTAAGAAATAAAGATATAAATAGAAGAGAAAAATAAAAATGAAAAAATCTTTGTTTAGGTTGGAAAAATAAATATAAAGTGGTATAATTAGAGCAATGGAGAAGATAAAGGAAAAAAGAAGTTGTGAATTGATGGAG # Right flank : TGTATTCTTTAAATATATTTTTTTGATTGAATAAATAAATTTTTAATAATGTTCTCATTATTTTTTTGTGATTCCCAACACAATTATCACATTTTTTTAACATACAAAAATATTAAATTTAATGTACGCTAATTTAATTGTCAAATTTATACGGATAAAAATTTTGTTTTAAGATTGTTTTAGAAAGAAAATTAATGTCAATAAAAAAAGAATTTTAAAAATATAAATAGTGATTATTTATAAATTAGGATGCTTAAAATTTAAAAAAATAAAAAATCGCAGATATTAAAAACATCTTTGGATAATGCAGCAGTAGAAAGTATATATGAATAGTCATGAATATATTGCTTTAGGGAAAATACTCCTGTGATAACAATTAGGAGGGATTAAAGATATAAATATTATTTAGTAGAAAGCATAATTGCTGCTGATATAAAGTATACATGATATTTCAAGGGTACTTTAATGGAGAATTTTATTTTTTATTTTAATATAATTAG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGACTAGTAACTTGATAAGTTTTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 18596-19085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJDLR010000013.1 Fusobacterium ulcerans strain DFI.2.87 HPPJLFFL_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 18596 30 100.0 36 .............................. TATCTTAATCAGGAAATTCATATACCAGAAGTGAAT 18662 30 100.0 35 .............................. CCATTGATTACATTTTCATTAAATAGTGCTGATGC 18727 30 100.0 36 .............................. AACCAATAACCAAGATTGTCTATTTTTAATTCTTTG 18793 30 100.0 37 .............................. GATGATTTTCAAATACTTCTATTTGCTTACTCAATAG 18860 30 100.0 36 .............................. TATATTTCTTTTTGGTTTCTATTACTTCATCTACAA 18926 30 90.0 34 ......T......A....A........... GCAGGACATGGATATTATAACAATGAGGCTAGTT 18990 30 90.0 37 ......T......G....A........... TCTTTTATATCTTCATTTTTAAATCCTGTTATTGCAA 19057 29 70.0 0 ......T.TC...-.CATAA.......... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 93.8 36 ATTGAACAGTAACCTTTGGGGTTTTTAAAT # Left flank : TATAGAATTGTACTCTCCCTTTTCTCTCATCTCTCTAAATGTAGTTATTCCTATTATTGGTCTCAATTATTTTTCCTCCTCAACATCTCTTTGTTCTATTACATTCTACTATATAATATACTCTTTAGCGAAAGTTTTTACAACCTGCAATTATAAATTATCAGAAATCTCTTTTTTTAAAATATCCTGTATTTTTAAAATACTATATTTTTCATAAAAAAACAAACAAATTTTTTTACCTTTTTAAAATTTCTCTGATATAGTCTGTAAATTACAGCACAATATTCTGACATATAAAAAATAAATTAATTGTATATTCTGATAATATATCTTTTTATTTTCCAAGTTACAAATTGTATTTTATCAAATAATATTCTTTAAGATGTAATACTTTGTAACATGTTTTTTTATCTATACTTGGTTGGAAAAAATCCATTAAATATGCTATAATTAGAATGTTAAGTAAGAATAAGAAATTATTAAAGTCTGAATTTATGACC # Right flank : TGTTCCAGCAATTACAATTCCTATTCCTGTTTGATCATTGAATATCAACTGATAAGTTTTTAAATCTTAAAAGAGAAGCTTCTGTATATCTAGGTTTTGGTATTGAATATCAACTGATAAGTTTTTAAATACACACCAGAAAATAAAAGAATCCATAGAAAAATTAAATTGAATATCAACTCATAAGTTTTTAAATTATTCAAATATAAAGTGCAATGTTTCTCCTGGAATAAATTGAATATCAACTCATAAGTTTTCTCCCTTTTTCAAATAAAAAAGAGAAGAACTGGATATTAGCTCATGACATTTTGGTATATCTTCAACTTCTCTAAAATTTCAAATTCTTATTTTATTACATTCTTAATGTTAATTATTTATTATTAATTACTTATTGAATAAAATATCAAGCTCCATTAATAAGTCATTATATCTTTTTAATTCATGATTTTTTACCGGAATTAATGGATTATAAATACAATGTTGAAGCACATCTGCATCTT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACAGTAACCTTTGGGGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //