Array 1 25626-21980 **** Predicted by CRISPRDetect 2.4 *** >NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 25625 29 100.0 36 ............................. AGAACCCCAATTTTCTATAGAAGCTAAAAAGGATTT 25560 29 100.0 36 ............................. TTTATGAGGCCCGCTTTCGATGAGTCCAAAAGAAAT 25495 29 100.0 36 ............................. GATACGGCTCTTTTTAATGTATCTATAGATGTTTTA 25430 29 100.0 36 ............................. AAAGAAATGTACGACAAACAATACTGTTATCGCTGA 25365 29 100.0 36 ............................. TCACATATTCAGATGTAACGTCCGTGACAGTCGCAG 25300 29 100.0 36 ............................. CAAGCAAGAATTTTACATTTTTGTAAAATTGCTTAA 25235 29 100.0 36 ............................. GAGGCTCTGCGAAGCGGGATACCCAGACCTTTCCAG 25170 29 100.0 35 ............................. CTTTCAAATTCTACTCTAAGTATACACCCGCATGA 25106 29 100.0 37 ............................. TGTACAGCAGCAGCTGCGGCATATATAGCTCGTGGTG 25040 29 100.0 35 ............................. AAAAACGAAATCGGCTTTTCGGAGGTGGCATGATG 24976 29 100.0 37 ............................. ACGACTTAGCAAAAGAAGATAAAACAGTATACTTCAT 24910 29 100.0 38 ............................. GCCTACACGGTTATTTCAGCTATTTTCTCTATCTTTAA 24843 29 100.0 37 ............................. AATATGTGAAAGTCCTTGAAGACTTAAAAAATCAAGA 24777 29 100.0 38 ............................. TGGCAAGAAAAATGATAATCGGCGGACAGGAAATAACA 24710 29 100.0 37 ............................. GATTTGTAGAAAGTAAGGTTATAGAAGAACTGGAAAA 24644 29 100.0 38 ............................. GCAAACTCACTAATGGATGGTCTTCTAATTCTTCTACT 24577 29 100.0 41 ............................. CAGGAAAGGTTTATACTTATGCAATACACAGGTTTAAAGGA 24507 29 100.0 36 ............................. AATAAGAAAAGGATATTTTCGTGTTGTTGTTGAGGC 24442 29 100.0 37 ............................. GAATATTATCAACAAAAAAGAAAAGAAGAGGTTTTAA 24376 29 100.0 35 ............................. GCTTGCAGACCAATTAGCAGAGCAAGGAGAACATG 24312 29 100.0 37 ............................. AAAGACAAACTGCAGGACATTAAAAACGACAAGGTTA 24246 29 100.0 36 ............................. TAGGTTCAAGTTCGATTTTTAAGTATCCCTGCAAAA 24181 29 100.0 37 ............................. TATGATATACTGCCAAACAGCGTAGCAACATATCTAA 24115 29 100.0 37 ............................. GACATTGGCGACACAAAAAGCAGACGGGCTGTTACGA 24049 29 100.0 37 ............................. CTTTGATTTTGTTAAGTGCTCTTGTTAGTTTTTCGAC 23983 29 100.0 36 ............................. TTAATAACATTTTTTGCTTTATATACTGTCCAATAA 23918 29 100.0 37 ............................. AAGCAAGCACAATTGTTTTTAAATGAGTATGAAGAAA 23852 29 100.0 37 ............................. CAAACAGCGTTGCTCGTCTACTGGCTGCCCTAACACG 23786 29 100.0 36 ............................. AATTACGGCACCTACCACAGCAAGCGTAAATACTGC 23721 29 100.0 36 ............................. CGCATTGTTGAATTTGAAACGGATACCGTAGGGCTT 23656 29 100.0 35 ............................. CTTTTTTAAGGTCTTCATTTACTGCTAACAGATGT 23592 29 100.0 37 ............................. TTTCTTATTCACAAGCACTCCAGCCGCAGCTGTAACA 23526 29 100.0 39 ............................. GTTTCGTAATTAGAGATAGTCCCTTTTGTGGTATTAAGC 23458 29 100.0 36 ............................. GAGTTGAGGAATTCGTCTCCGGCTGCATCCGCAGCT 23393 29 100.0 36 ............................. TTCGAAACTGTTAGGGGAAAGGAAAGAACACAAGAT 23328 29 100.0 37 ............................. TCCGATAGCGTATTGTAACCTTGTGACTTAGCTCGGA 23262 29 100.0 38 ............................. TCCAACAACAGGAGCATATTTATCGTAAACACTATGAT 23195 29 100.0 38 ............................. GACTACGAAACATTACAAAAATTAGCAGACATTTTTAA 23128 29 100.0 37 ............................. AAGAAGAGTGATGCTAATAAATACCCTTCAGAAGCTC 23062 29 100.0 37 ............................. CTTTTTGTTGTTATGTGTTGATTTGCTAACTTTAGTA 22996 29 100.0 39 ............................. GGACAAGGCATATTAAACATAATTGCAAATCTACTACAA 22928 29 100.0 36 ............................. CTTTTACTGCTGATTCAAGGAATTTTACACTGTTAG 22863 29 100.0 36 ............................. GAGGAACAGAAAGCTCTTGTATCCGATGCAACCGGT 22798 29 100.0 38 ............................. GTGGTGTTGCTATAAGAGCTGATGAAAGTTTAAATAGG 22731 29 100.0 35 ............................. TACGTGGGAGGCAGAAGCTCCAGCGGTGATGGCAA 22667 29 96.6 36 ......C...................... GAAATATTACAAAGATTAGCAAGTTTTTTTGATGTT 22602 29 100.0 37 ............................. ACGTTTCTCTAACTCCTTTTATGTCTATCGTTATTGA 22536 29 100.0 39 ............................. AGAAGACGAGCAAGCGGTGCAAATGAAGGTAGATTATGA 22468 29 100.0 37 ............................. TCTATTTTTTAAAAAATCAAAATCCTTTTTAAAACTT 22402 29 100.0 36 ............................. GTGTCATCGTGCTTTCAGTTGGGGCAGTACCAGTTT 22337 29 100.0 37 ............................. ATCAAAAGGACTGTTAGGAAGAACATTAATAATCATA 22271 29 100.0 36 ............................. ATCATAAATTGGATAAAAGTTATACACATTATCTAC 22206 29 100.0 36 ............................. ACTGAGGATCTTATACCTTCTGATAGAATAGATTTG 22141 29 100.0 36 ............................. GAAATTATGGTTTGATTGTTGAGGAGGTGTTAAATG 22076 29 100.0 39 ............................. CTGCATAAAGCCTCAGAATAAGCTCATTAGCAATAGCAG 22008 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ========================================= ================== 56 29 99.9 37 GTTTTATCTGAACTATGAGGGATGTAAAT # Left flank : TGAATTTTTGCCTAAAGGAGTGATTGAGAATATTTGTAATAGTCACATACGACATCAACGAAAAGAGAGTAAACAAAGTAAGAAAGATTCTAAAAAAATACTTTACATGGGTACAAAACTCTGTATTCGAAGGTGAAATCACATTTGGGAAACTTGAGAAATGCAAACGAGAATTGCTTTCAGTAATAAAAAGAGATGAGGATTCAGTATATTTTTATGAAATGGAGTTTAAAATTGTCTGCAACAAAAAGGTATTAGGGCAAGAAAAAAATTATGACTCCATAATATTGTAATTATGACAATATAATCAATTTTGCAGCGAACTTCGCCATAGGGTATACAACAGCAAGGCCTTGACATAACTAAAAAAAGAAGCTATTTAACAAAAAATGCTAAATCCAGACCACCCCTTCGCTGCAAATCATCCTTGTTGCAAATAATTTTGAATTTAGTATAATTGTAGATGATATCTGAATTTAATAGTTCTGTTATTAAAGTGG # Right flank : TTAAATTGATAACGTATATAAGTTGTGTCTGTTACTGTAAAAGTCAATATATTTTTGTACAAAAAGTGGAATATAATTTTGTACAAAAAATGTACTAAGATGCATTCGAAGAACTGTTAAAATATTCAACTTTTGACTTTAATCTATATGAAGGCCCTTTTATTGATATAACATGCGAATGATGAAGTAATCTATCCAATATTGCATTGGCTAATGTTGCTGATCCAAATACTTCTGCCCAATTAGAAAAGGGCATATTAGTTGTAATAATAGTACTATGCTTTTCATACCTTTTAGATATTAGCTGAAAAAATATATTTGAAGCATCTGTGTCTATTGGTAAATATCCTACTTCGTCTATTATTAACACTTTATACTTTGAAAAATGTTTTAATCGGATCTCTAAACGGTTTTCTGCTAATGCCTTTTTTAATTGAGACATTAATTCTTGAAAATGAATGAATAGGTAGAATATCTGTGCTTAGCACATTCTATCCCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 791663-793620 **** Predicted by CRISPRDetect 2.4 *** >NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 791663 30 100.0 36 .............................. AGCGCTTCTTTTCTGAAAAGTTTACGACTGCCACAA 791729 30 100.0 36 .............................. TTGTTTGAGGTGATAAGCCACCTTTTTTGCCGTCTA 791795 30 100.0 38 .............................. ATATATACGCCCAAGTACCCAGATGTTACCTGATTAGC 791863 30 100.0 36 .............................. TTTTCAAGTGCTTTGATGAGTTTTCTAACTTCTTCT 791929 30 100.0 35 .............................. TTATGATGGACAATTACAACCATTCTCCCTGGATG 791994 30 100.0 36 .............................. TAAAGATACAGTATGTTGATTTCTATTCTGTTGAAA 792060 30 100.0 36 .............................. TAACATCATAATTTTATGATGTCAAGTAGTTTTTTA 792126 30 100.0 37 .............................. GGTCAATGGCGGGATTGCAGAAACATGCGAGCCAATG 792193 30 100.0 37 .............................. AGAAAAAGTAGCTACGACCATTGCCAATGCGATTTGC 792260 30 100.0 37 .............................. TTTCGCCAGCGCTAGCATTTGCACTGTTAGCTAATAA 792327 30 100.0 35 .............................. GAGCAAAGAACAGTTAATCCTTCTCCTTGTTTAGA 792392 30 100.0 37 .............................. TCCCCCCCCTTTATCATTCATTGCTTTCTTCTTCCTC 792459 30 100.0 35 .............................. GGTAGCAAGGTTTTTCTAGAAATTATTGCTTTTCC 792524 30 100.0 36 .............................. CAGTGAAGAAGAACAAGAGAAAGAAACGCAGCAAGA 792590 30 100.0 36 .............................. AATATACTTTATGGTGCACAATATCTCCAGGTTTCC 792656 30 100.0 39 .............................. AAAAATATTCTTGACCCTAAACGGACATGAGGGATTTTC 792725 30 100.0 36 .............................. ATATCACACCGTATCTGGATATGGCGAACGCAAAAA 792791 30 100.0 36 .............................. GCAAGCCTTTTGCGCTAAGCAATGCTAACGCATTTG 792857 30 100.0 35 .............................. TTATTGATTGTCGTAAAGTACAGCACTAAAAAGTC 792922 30 100.0 36 .............................. ACACCAGTTACTGCTGGCATATTAATCAACCTCCTA 792988 30 100.0 37 .............................. AAGATTGGCTTGATTCCGGTGGACGTGACAAAATCGT 793055 30 100.0 38 .............................. AGCAGACTGCTTCCCTGTTGCACAGTTTCAGGAGGCCC 793123 30 100.0 36 .............................. AAAATAAACATTTTTATCCCTCCATACTCATTATTT 793189 30 100.0 37 .............................. AACCATTTATCTGGTGTGTCTGGATGCATAGGAAGAC 793256 30 100.0 36 .............................. GAAGAAAAGAAGTATGCAACTAGCTACATGGCAACG 793322 30 100.0 35 .............................. CAGACAGGGACACCAGCAACATTCGCAGGATATCC 793387 30 100.0 38 .............................. CTGTTGAAGATTTGAATTTCATTCATATTAACTAACCT 793455 30 100.0 37 .............................. CCAAAAAGGACATTGGTCCTTTTTGGTAAATTTCATA 793522 30 100.0 39 .............................. ACTCTAAAATGAATGTACTTCCTCATCTTTTCTTCAAAG 793591 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 30 30 100.0 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : AAGTCATGTCAAAAGCAGTTCCTGCTGGCAGTGTATATTATTATGAGATATTAGAGGGGCCAATCGATAGCCTAATAGAAAAAATATATGAATGTGGAATTTCTGATGCCAGAGCTAATGAAGGATTTGGAAGATGTTTGATGGGGGAATATGATTGGTTAAATTAATTACTACTGTTGCTATATCACTTTTTAACAACTATAGCAAGGAAAAAAGTATATAGATGTGTTTATTGAACTGGAGCCATATATTGTAATAACGACTATAGGATTAGCGAAAAGTACATTTTATGCTGTGTTTATTATCTACAACAATGGTAATAAATTTGTCGTCGATCCCTAATAGTGCAAAAACATCTAGGGATAGACGACATTTTTATTTTGCAAGTTTTCATAAAATAATTGATTTCATTAGATATTATGGTATAATAAAGTCAGGAAACTTGACATGAATTAAAAAAGTGTAAATTATTAATGTGCTATTTATGCATGTTATAATGG # Right flank : CAGCTCCTCGCGGGTATACTGGGATTTCATGCCCAGAGCGTTTTTAGCCTACCTAGGAATTGAAACTTGGAATGCTATTTACAGCAACTTAGCAAAACATGAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCATACCGATGTAAAAATATGGGATAAATGAATGGTTAATAAAGTAAAATAAAAAGTTAAGACGCTGCAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTTTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTCGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTTCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTTTCTTTTGCCTTTGAGGCAGCTAAGAACACAAATGGGCAGCAGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2217711-2216208 **** Predicted by CRISPRDetect 2.4 *** >NC_014209.1 Thermoanaerobacter mathranii subsp. mathranii str. A3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2217710 30 100.0 35 .............................. CCTAATGTAACTTAATTCCAAACTTATAAAACCCT 2217645 30 100.0 36 .............................. AGCTCACTGTTGATCTCTTTACGCCGTGCCATGATT 2217579 30 100.0 39 .............................. TTATTATCTCCTTTCTCTACTTCTTTTTTCTTTATGCCT 2217510 30 100.0 38 .............................. AAAGTTAGTTTAGAAGGCTCTACAAATAAATTGCCTTC 2217442 30 100.0 38 .............................. ACATTTTTTCCTCTTCAGGATTAGAAATGAAAGCCAGC 2217374 30 100.0 36 .............................. AAGTATGCGTATGGGATTGTGTATTGCTGTAACTCC 2217308 30 100.0 37 .............................. AGTTCTTGTCTGACAACAAAATAGTCATTTGTTTCTA 2217241 30 100.0 39 .............................. TACAAATCCTTTTTTGGATCAGTCTATACAAGTATCTGC 2217172 30 100.0 36 .............................. TTGGATCTTTCAAATCAGACAGGAATAAGCGTAAAC 2217106 30 100.0 38 .............................. CAATATTCCCCACTTGAATGGTGATAACACGGTGTAAA 2217038 30 100.0 36 .............................. GAGTTGACATCAGTGACGACCCCGACACCAGTTGGG 2216972 30 100.0 35 .............................. AATATAAGACATTCATTCTACTAGCCTTAGAAACA 2216907 30 100.0 38 .............................. TTTGAAAGAAAGGTGGTGAGAAAGTGAAGCAGAAGCGA 2216839 30 100.0 36 .............................. GGTTTTGATTTATGATTGTTTCGCTTGCCATTCTCG 2216773 30 100.0 37 .............................. AGCACTTGCTGTCCGAAGTTATTGAGGATGAACCTTT 2216706 30 100.0 37 .............................. CAAAGAAAAGTTTACTCGCACCCTTATCCCGCATCCA 2216639 30 96.7 39 .........T.................... TGCCTCAGCCTGTTGTAGATGTAGAACAGGATACATCAG 2216570 30 96.7 36 .........T.................... TTTTTAAAGATTTTTATCTTTTTCGTTTGCAAAATG 2216504 30 96.7 36 .........T.................... TTAGCTTTTAAACATGCCGTACGATGGCAACTCATT 2216438 30 96.7 37 .........T.................... CAGCGCTTGAAAGTGATAGAGACGAGGACATAGAAAC 2216371 30 96.7 38 .........T.................... TTGAACCGCTCTCTAGAGAAAGGTCCAATCCATTCCTC 2216303 30 100.0 36 .............................. TTGTAACCAAAGTCCAAGCCATAGTAGATAGTATTG 2216237 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.3 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : GATATGTGTATTTCCAAATTTAAACTAATTGAAGATGACTATTATAAAGTAGATGCGTTTATCGAATTGAATGAAGAGGCCAAAGAATTGTGGCAAAAATATGTGGGACTTAAAGACATAAAAAATCTATTTGAAAGGAGAAATATTTTTAATCGCTTTAAAGCTGATTTCTATAAATATGTAATATCAATACCCGCAACAGCTGAAAACATGCCTCCTGATATATGGGGTTTCAAGTATGTAAATTATGACAGTTTAAATGAATATTATGACAAAGAAACAGGTTTTATTGCAAAAGGAGTTATAGGTATATGGTAATAAAAAATGTCGTCGATCCTTAGTAGCGCAAAAATGCCTGGGGATCGACGACATTTTTTATTTTTTGGTTTTCAGATTGTAGTTGATTTTATCGAACAATATGATATAATAAAGTCAAGATACTTGACAATAAATTAAAAAGTTATAAAACTTACATGCACTATTTATGCACGTTATAATGG # Right flank : TGTAAAAGCAGCTGCTTTACATACTATTTAAAAAAACGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATATAGAACTAAATGGATATAGCTACATAAATAAAATATAAAAAAGTTAAGACGCTGCAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTACAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATAAGGTTGCTTTCGTTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCTCTTGAGGCAACTAAGAACACAAATGGGCAGCAGAGGGGAACTATTCCATATTCGTGCCGATTTCGGCTATGTGGGAATAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : GTTTTTAGCTTACCTATAAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //