Array 1 5761-6674 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADOZR010000067.1 Flavonifractor plautii strain J1101653_170612_C3 NODE_67_length_16324_cov_32.8119, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                        	Insertion/Deletion
==========	======	======	======	=================================	=======================================	==================
      5761	    33	 100.0	    35	.................................	ACGCATAATCCGATACTGCTCTTCCTGCCATTTCC    	
      5829	    33	 100.0	    33	.................................	TGATGTCCCTGAGATTTCCGCCTATGCAGAAAA      	
      5895	    33	 100.0	    35	.................................	AAGGCCGCCAAGTTCCACGACTACTTCACCAGCGC    	
      5963	    33	 100.0	    34	.................................	ATATTGATAATACAAAGATTACAAACTATCAATA     	
      6030	    33	 100.0	    36	.................................	CATATGCATCCTCATTAAATGCTCTACAATTTGTAA   	
      6099	    33	 100.0	    36	.................................	TCGGTGAAGTAGGCCGCCCTCCGGCCCTTGACCCAC   	
      6168	    33	  97.0	    33	..............G..................	CGGTTGCCCCAGCCGCCAAAGCCGCCGCCCATC      	
      6234	    33	  97.0	    34	..............G..................	GGATGTTGACGCCGATGCTGGGCGTCACGGTGTA     	
      6301	    33	  97.0	    35	..............G..................	TGCTATGAGATGGACGAGTATTGCCAGGCGATCCT    	
      6369	    33	  90.9	    39	............G.G..........A.......	TGCTCGTTGCTCTGGTAGCTCTGCTTGCCGGCGTAGGCC	
      6441	    33	  90.9	    33	............G.G..........A.......	GCGGAGCTGGCGGAAGACGACGGGGAGCTTCCA      	
      6507	    33	  90.9	    35	............G.G..........A.......	TGGTTGGCCTGAGAGGCAGCCAGCTTGAGGGACTG    	
      6575	    33	  97.0	    35	..............G..................	AATCTGCCGGAGCTGATGGCCATGTTCAAAGAGAT    	
      6643	    32	  84.8	     0	.......T....G.-..........A.....C.	|                                      	
==========	======	======	======	=================================	=======================================	==================
        14	    33	  96.1	    35	GTCGCACCCCTCACAGGGTGCGTGGGTTGAAAT	                                       	       

# Left flank :   TGGACGCCTATCCGCCCTTTTTATGGAAGTGAGGCCATTATGCTGGTTTTGATTACCTACGATGTCAATACGGCGGATGCCGCCGGGCGCAAACGCCTGCGGCAGATCGCCAGGCAGTGCGTCAACTACGGCCAGCGGGTTCAGAACTCCGTCTTTGAGTGTAAGCTGGATCCAGCCCAGTACAAGCTGCTTCAAGCCAAGCTGTGCGCAATCATGGACCCCGAACGGGACAGTCTCCGCTTTTATTCCCTGGGAAATCGCTATGAGCAGAAGATCGAGCACTTTGGCTGTAAGCAGACCTACCTTCCAGACGAACCTTTGATTTTGTAGCGTGCGAAGTCCAAGATGACACGCCTTCTCCGGCCGGTCCGCACCCAAAAAGCATAAAGATACGCTCAACGGAGCATAAACGCCTTTGTCGTTGTCTCTCAATCTGTTTTTTCTTGTAAAAAGCGAATAAATTAATGAGTTTAAGTTCTCGTTTTTTAGCAAAATTTGCC
# Right flank :  TGTCTTACAGGGGCGCCTGGTCAGTTTGCAGGAGACGCCGCATAGGGGCGCGGGTCGATTCATATTTTTCACCCCGCGCCTCTATTGTTTGCGCTTCTTTTCGTTGACTGGTCTAGTAGGGAATGATATAATAGGATGATTATGACAAAAACTATGGTGGGAAGATCGTATTATGTGGATTTCAACTGACTGGAAGGACTATGAACTGCTGGACTGCGGCGGCGGCGAGCGGCTGGAGCGCTGGGGCAAGTATCTGTTGGTGCGGCCCGATCCTCAGGCCATCTGGCGTCCGGAGGGGCGGCATCCCGGATGGCGGAGGCACGACGCCCGGTACCAGCGCGCCTCCACCGGAGGGGGCCAGTGGGTCAAGAAGGAACTGCCCCAGCGCTGGACATTGGGCTACAAGGGGCTGACTCTCAACATCAAGCCCATGAACTTCAAGCATACCGGCGTCTTTCCAGAGCAGGCAGCCAACTGGGACTTCGCCATGGAGCGCATCC

# Questionable array : NO	 Score: 5.75
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCCTCACAGGGTGCGTGGGTTGAAAT
# Alternate repeat :   GTCGCACCCCTCACGGGGTGCGTGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 88% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-4.70,-6.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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