Array 1 12360-10012 **** Predicted by CRISPRDetect 2.4 *** >NZ_VUMR01000052.1 Holdemanella porci strain LKV-472-APC-3 seq52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 12359 36 100.0 30 .................................... CTGTGCGAAAGAATTGCGTAATTGAAGGTA 12293 36 100.0 31 .................................... TGGATTGAATGAATATATTAATGCTTGCAGA 12226 36 100.0 30 .................................... TTCACGATTGATGAAATGAATGAATTTATC 12160 36 100.0 30 .................................... GCAAATAGCACAGATGGTACAATTAAGAAA 12094 36 100.0 30 .................................... GGGACATGAAAGAAATGTTATCCGAAGATA 12028 36 100.0 30 .................................... TGGATGATTTATTTATCGCAGGATCTAATT 11962 36 100.0 30 .................................... TTATTTACAATCCAAAGTTAAGGAATACTG 11896 36 100.0 30 .................................... CTTGCACGCAGGAAGCTATGTGACATCAGT 11830 36 100.0 30 .................................... ATACATCCTGTTATATAATCAACTACATTC 11764 36 100.0 30 .................................... CAGTAATCCTAACTCCAAATGTACCACTAG 11698 36 100.0 30 .................................... CTGTTTGCGTAAAAATAGTCATACATATCG 11632 36 100.0 30 .................................... TATACGTTGATGTATTTACGTGTATAGTCA 11566 36 100.0 30 .................................... TATTTATGTTGTGCTATTACAGATGAACGT 11500 36 100.0 30 .................................... TTTTTTTTGTGGCTAATTGTAAGTGTAGGA 11434 36 100.0 30 .................................... TTACCTCACTTTCTATACCATTATTATACC 11368 36 100.0 30 .................................... TTTTTTAAATGGGTCAACTACCCACTCTTT 11302 36 100.0 30 .................................... TTAGGGCAAATGTTAAAAGTTGCTAATCCC 11236 36 100.0 30 .................................... TGAGATGAACCATCAACAATAAGTTCCCCT 11170 36 100.0 30 .................................... ATTAAACATCCAATCGTCAATATAACAGAT 11104 36 100.0 30 .................................... ATAGACCCTCAGCATTATTTACGGCATTAA 11038 36 100.0 30 .................................... ATCACAAGCTATGCAAAGAACTTTACTATC 10972 36 100.0 30 .................................... AAACTCATCAAGTAATCCAAATAGCGCCAC 10906 36 100.0 30 .................................... CTTTAGGCGAAGGGTTATTGTCTACACCGC 10840 36 100.0 30 .................................... GATGAAATTGTGGAAGTTGCTTTCGTTGGT 10774 36 100.0 30 .................................... AGAATTAATACAACTTTAGAAACTCAAAAT 10708 36 100.0 30 .................................... TCTGATGTAGCACCATCAACCCTACCTCGT 10642 36 100.0 30 .................................... TCAACTAACTCTCTAAGTGTATCCATTGAA 10576 36 100.0 30 .................................... TTCCAGCATTCGTACTAGGTGCAGGAGAAT 10510 36 100.0 30 .................................... CTATTTGCGTAGAAATAGTCATACATGTCA 10444 36 100.0 31 .................................... TAGTATCAACAAAGAGTCTAGCTTTATAAAT 10377 36 100.0 30 .................................... TTGAAGAACCGGATGTTATGATTGACTCAA 10311 36 100.0 30 .................................... CCAGACAATTTATTGACGAGCAAATGGAAA 10245 36 100.0 30 .................................... CTAGATACGGCTTGCAAAACCTTGTATATA 10179 36 100.0 30 .................................... ATCTTGAGAGATTACATTGTTTAATACATC 10113 36 100.0 30 .................................... GCATTTTCGTGTTCTTACACTTAAATTGTA 10047 36 83.3 0 ....................A.....G.G..G..TT | ========== ====== ====== ====== ==================================== =============================== ================== 36 36 99.5 30 GTTTTGTTACCATAAGGATTTTTGCTAGAACAGAAC # Left flank : AAGCAATTGATAAAAATGTTGTCACCATATTATGAAGACGAATTACAAAAAGATGAATTTGATCTAACGAAAGATGAATTGATTTTGTTTCAATTGGATTTAGTTGAATATATATCCAATCATAATTCAAAATATGATAATATCTTTGTTTTCGGCAAACTAGATAATTTAAGTGATAAAATTCTTCAGAAAATCAATAAAATTGAGAATGTTATATTGATGATTTTTACAAATTATTACAACGATTTAATGAATGTACAAAATACAGCTTTATTGCAAGATAAAATAATAGATTTTGCAGACATGGAACAAATTTATTACGACCTATCGCAAAAATCACTTCAAACATATACGTTACAGGAGGTAGAACAAATGACAATTAATTATTTACAACAAATATACACTCACAAAACACATGATATTTATCAAGAACTAGACCATTTTTCAATTAAATAATTAGTATTCTATTACATTCAAAAATGTGCTACCATATTTTTGAG # Right flank : TGAAAAATGAAAAAGGGAGTGACACCCCCGCCAGAAAGGGCAGAGGGGCATTCCCATCTACATTTTATTGTGTAAATGTTAATTAAATAAGGAAGAATATAAATATTTGATTAATTAAAAGGTATGTAATGTGTTTTTTGGAAATACAATACAAATAAACTTAGTCCATTTTGTTACTGTATATTTTTGCTAGAATATCGTTTATTTATCTTGTTTAATATTGACTACAACATACTCACAAATACCCTCTGTTCTTATAGGAAAACCCCAACCAACAAGTTCTGAGCTAATGTTTTTTGCGTAGTGTTTAAATGTTTTTTTTCCGTAATTACCCGCAAAGTTGGGTTGTAGGTGGTAAGAGAAAGATAGTGGAAACATTTGTCCGTTATGGGTATGACCGCTGAGTTGAAGGTTGACATTGTTTTTAGTGTTTTCTTCTGTTCCTTGGGGTTGATGGTCTAGGACAATATTGTAGGTGGTTTTATGGATGGTATACATAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATAAGGATTTTTGCTAGAACAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //