Array 1 768-1596 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248354.1 Porphyromonas gingivalis SJD4 scaffold113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 768 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 835 36 100.0 30 .................................... TATGGAAGATTAAGAGTGATGTTAAAGGCT 901 36 100.0 30 .................................... ATATCCAAATTAATGAATATGAACCCTACT 967 36 100.0 30 .................................... TGCTTATAACAGGGCATAAAACCGAACAAG 1033 36 100.0 30 .................................... GGTAATGAATTCAAGAATCGGCTAGAGTCC 1099 36 100.0 30 .................................... TCTCTCGACGTGCTATCAATGTTCACCCGT 1165 36 100.0 30 .................................... GCAGCAATGGATATATCTTGTAAGTGTTCG 1231 36 100.0 30 .................................... GATGGAAAATATCATGAAAGTCACATAAAA 1297 36 100.0 30 .................................... TTATCTTATATTATTTGAAACAGGAGAATC 1363 36 100.0 30 .................................... AGTCAGGATATAAGTCAGAACTGACGATGT 1429 36 100.0 30 .................................... AGTTGTGTGTAATACTATTCCTGCTGGAAC 1495 36 100.0 30 .................................... GTGATTGTGTGAAAAATGATATACGGTGCC 1561 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : TATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGGGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCGAAAGGCCTTTAGGGGAGGTATAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTCGGTGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCCCTCATACAGCAGGCTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAAGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCACCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATTCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CCTACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGGCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATGCTGATCATCCGTTCGGCCATTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 27-4732 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248348.1 Porphyromonas gingivalis SJD4 scaffold107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 27 30 100.0 36 .............................. TATTTACAAACTACCAGGTAATCTCTAATTTCCTCA 93 30 100.0 36 .............................. GTTTGTAGTCAGTGTTTATACTCTTTGCTGTTAAAT 159 30 100.0 36 .............................. AGAGTCTTTCGTGATAATAATACTAGGCTTTACTGA 225 30 100.0 35 .............................. TCTCAGACATAATATAACAAAAAGAAATTAAACAA 290 30 100.0 36 .............................. TCCATTAGAAGACGAATATCATATAGATACTTCTCC 356 30 100.0 36 .............................. CAAGGTCCAAATAGCGACACAGAGAAAGTAAAGGCT 422 30 100.0 35 .............................. ATTAATAGCGGTATTGGTGGAAAGATACAGAGCTT 487 30 100.0 35 .............................. TATTCCAGGATTAAGCGACGTCTTGGGCCCAACAG 552 30 100.0 35 .............................. GGGACACGTGGTAGAAAGCCACCTGTTCCGCCAGA 617 30 100.0 37 .............................. CCTATGAAATCCCAGAGAAAGCTAACAACAATCACTT 684 30 100.0 37 .............................. CGCCATTTCCAATTAAGGTCTCTTTTCCAAAAAGCTC 751 30 100.0 36 .............................. AAGAAGGTACTGAATCAAAGCCGGGGATAACTCTAA 817 30 100.0 34 .............................. GAACGGACCCAGCTGCTACATAAGTCCCCATTGC 881 30 100.0 35 .............................. TCATTTTCAATTATACTCTTCACTTTATCAAATCT 946 30 100.0 37 .............................. CTGCCTGTTGAGCTGCAAGCATGGGGTCATTAGTTGC 1013 30 100.0 36 .............................. TTTATGGCCAAGGTAAGAAACGTGGTTTATTACTAC 1079 30 100.0 36 .............................. TGATAGTTCTATTATGAGTGGGGCTGTGGTAAACTT 1145 30 100.0 35 .............................. GGTGCCTTTATAGTGTAACGAACTTCCGCATCCTT 1210 30 100.0 36 .............................. TAATATCCAAATAGCTCCACCCCCTGCTGTTAGACA 1276 30 100.0 36 .............................. CTATATCTTTGATTTTCTTTCCTACATATTTTCCTA 1342 30 100.0 36 .............................. TTGGAATATGGCTTCTCCAGGCCAAAAGACAATCTT 1408 30 100.0 37 .............................. TCTATATCTTTGATTTTCTTTCCTACATATTTTCCTA 1475 30 100.0 36 .............................. AACATAACGTAACCAGTACGCCCTCCCGGGAAATCT 1541 30 100.0 36 .............................. CTTTCAGGAACCTGTAAAGAGGCCCAAACCAATCTA 1607 30 100.0 35 .............................. CTTCTATAAATACCTTTCCTTCCTCTGCTAGTTTT 1672 30 100.0 35 .............................. AACGGGAATGTTGAAGCCACCATCAGCGGCCACAT 1737 30 100.0 36 .............................. CTTACCGCCTCAACCGTGCTATAGCTTGATTTCGAT 1803 30 100.0 36 .............................. TCAAAAGCACCCGGAAGTATCTTCTCCCTAAATCCG 1869 30 100.0 36 .............................. GAAATAGAAGCTTTCACGGAATACTCAGTTGTCGTA 1935 30 100.0 36 .............................. AATCTCTACCTCATGAGCTTTCAGCAGCTCTGTGAA 2001 30 100.0 37 .............................. ATCAGCTCCTGCAGCTTGTTGAGCGGCGCGATAACCT 2068 30 100.0 36 .............................. ATCGCAAAGGTGGGTGCCGAGGCATTCGCCAAATCG 2134 30 100.0 34 .............................. TTCTGGAAGATGTATCGCGGGGAAGTGCGGGCTT 2198 30 100.0 35 .............................. TGATGAGGACGGCGTGCGCAAGGCGGAGCCGGCAC 2263 30 100.0 37 .............................. TCGATAGCGGCTCCGAGGAGCCTGTCGATACTTTGAC 2330 30 100.0 36 .............................. CGCTCGTACGAGCGATACTTGGCGGGCGTAAATGAC 2396 30 100.0 37 .............................. ACGGACAACCTACACAAGACCCAACTCAATCTGTAAA 2463 30 100.0 37 .............................. GGGATTCGGCCGCTATTCAAACGCCGCGCAAACAGAG 2530 30 100.0 36 .............................. CATCCATGGATGTCTTCTTCGCCTTGGCTTTCTTCT 2596 30 100.0 36 .............................. CTACACTAAAAAAGCGAGCTAAAGAGCTGAAAAGTT 2662 30 100.0 37 .............................. TTACAAGCTTAGACCCGAGAAGAATGTCAAGAACTTT 2729 30 100.0 36 .............................. TATTCATCGAAAGAGGAATCAAGAAGAGCTGTCAAA 2795 30 100.0 36 .............................. AGCAAAGAAGGAGAAGGGGAGTTATATAACGCCATG 2861 30 100.0 35 .............................. AAGTTTAACAAATAAAAGAAATCATTAGGCAGCAG 2926 30 100.0 34 .............................. ATATTTCATTAAAAGGACTCTCTGAGATTACTGA 2990 30 100.0 38 .............................. ACTCATAACCTCAGATATAACCTCTTGAGGATAACCAG 3058 30 100.0 35 .............................. AAAAAGCTCACAGTTCCACCTATCTTTTTCACTTG 3123 30 100.0 36 .............................. TCATTAGGCAGCCAGATGAAGGAAAGGCCTCATCAG 3189 30 100.0 36 .............................. TCATCTGAGAAGCCTGTGCTACTAGGGCTGTATTTG 3255 30 100.0 38 .............................. TCACACTTATTCCGCCAGTTAGTGAACATGGGTTACAT 3323 30 100.0 36 .............................. CGCGTTGTATTGCTTGTATGATTGCATGCGCTACCT 3389 30 100.0 35 .............................. CGCGCTTATGAGCGAGATACGGGCAAGCCCGCCCC 3454 30 100.0 36 .............................. AGTTTGTCGAGCTGTAGGACGCGTGTTGCTTTGAGC 3520 30 100.0 35 .............................. CCGCAAGCGCGGGCGGATGTCTATAAAAAATACCT 3585 30 100.0 37 .............................. TGGTTTTCTCATAGAAGAGCCGTCTAAATGCCTGTGA 3652 30 100.0 37 .............................. TAGCGGGTGTATAACTGGCGGATCGGCTCTATCAAAG 3719 30 100.0 36 .............................. TTTATTGTTTAGATTCGACTGGGAGGCGACGACCGT 3785 30 100.0 36 .............................. AGGCACTCGAGGTGCCAACGAGGGAGCTTTTCCCCG 3851 30 100.0 35 .............................. CATAATGAAGAGATTAATACACTGAAACAGAACTT 3916 30 100.0 36 .............................. TCAACATCTACGACGTAGTCAGTCTCTAATTCTCGA 3982 30 100.0 36 .............................. GAAACTAAAAGATGAAAACGCAGATGGATTATCAGG 4048 30 100.0 35 .............................. TGCTTGATTACTATAATAATCTAATGCCAGGCCAC 4113 30 100.0 34 .............................. AAACATGGTTAAGTGCTGGCCAGAGTCTACAACA 4177 30 100.0 34 .............................. AACAAATAAAAATTTTGCAGCCCATCATAAACTC 4241 30 100.0 37 .............................. TATTCCAAGTATCTGATTATTTGGGAGAATATTCGAA 4308 30 100.0 36 .............................. TGTTGTAGAAGGTGATTCTGCAGCAAGTCCACTAAT 4374 30 100.0 35 .............................. ATAACACACGAACATCATATTGTTCGCGCATACCT 4439 30 100.0 36 .............................. AATAGGCCGATCGAGGAGAAGAAAATTCCTCATTTT 4505 30 100.0 36 .............................. GTGAAAAAGTAGCCAACTGTAATATTTTCGTAGATC 4571 30 100.0 37 .............................. TATCAAAGAGTGACGAGGACGGAATGCAAATAATGAA 4638 30 100.0 35 .............................. AGAGGAGACTCCGATTCTTCCAGCCTAAGTGGAAG 4703 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 72 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TATGTGAATAAGAATTGTTATGATTCG # Right flank : CAGTTTATCCTAATTTCTCAGCAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 123-3377 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248359.1 Porphyromonas gingivalis SJD4 scaffold118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================= ================== 123 30 96.7 38 A............................. AATCGGAACCTGCTGTCGCACGCCTCATACGCCCGAAT 191 30 100.0 89 .............................. CATAAGATGGAAGTGGCGAAGGCGAAAATCGACGAAGTTGGTGCAATTGAAATCCACGATAAGGCCGATTTGCCAGTCGATCTCCTCGA 310 30 100.0 35 .............................. GCCTGCTCCGTGCGTTCTCCGAATAAATCCCAGTA 375 30 100.0 37 .............................. CAGACCCAAGCAGAGTATTTGCAAATGAACAAAGCTA 442 30 100.0 36 .............................. TAATCCATTAGCAAGTCTTTTGAGCGTTGCGACTAT 508 30 100.0 37 .............................. GTCCGCTCAGCTGCGCTGCGTCGAGCAGCCGGATGAT 575 30 100.0 37 .............................. TTCATGTCGCGCTGGGTGGCAGATGAATCCGCCACCT 642 30 100.0 37 .............................. AGAAGTTAGCCCTTAGTGTAGTGAGAAGCTTATAGTC 709 30 100.0 36 .............................. CGGTAGAAAAGAAGTGGGTGGCTTCGTCCGTCTTTG 775 30 100.0 35 .............................. GACCAGCCATCCGAGCAGCTTTAGCAACCATTCGA 840 30 100.0 37 .............................. AGAGAACGGACTGGTGACGAATCAGGAGCTGTCCGAA 907 30 100.0 37 .............................. GACCGCATTCATCATCTCTTTGAAATTCATATTCTAT 974 30 100.0 38 .............................. CAGTCAGATTATCGAGCGCCTTCGTTGCCATTTCTCCC 1042 30 100.0 35 .............................. TGTTCTTCGTATCGAGCGTATGCAAAGCGATTTCA 1107 30 100.0 35 .............................. TGACAAATGCCTTCTTCGAGCAGGTTTCACAAGCT 1172 30 100.0 36 .............................. CGAAAAACAAGGCCGGCCTGAAAGCCGCCTCTTTTG 1238 30 100.0 37 .............................. AACCGGCTTGATAACGACAGTCAACGCGAATTATTCG 1305 30 100.0 35 .............................. AAAGGTAGGCCTCTTTTTTTGCTCTTACTCAAACA 1370 30 100.0 37 .............................. AAGCAGTCCGACAACTACGAATATCCTCAGTATATCA 1437 30 100.0 37 .............................. TATATTTTTTCTTGCGCAGTTGTCTCATCGCGCTCTC 1504 30 100.0 35 .............................. ACATAGCAGAGTCCTATGCAAAAGATGCCAATTCT 1569 30 100.0 35 .............................. TATGCCTCTAAGAACGGTATAAAGATTGACATATG 1634 30 100.0 36 .............................. GTGGAGCAACGTATCGAGCGATCGATGTCCGCGCCC 1700 30 100.0 35 .............................. CCTCGGCATCCCCATCGAGCACATGGGCAAGCTGC 1765 30 100.0 36 .............................. AAATCATCGTCGACTTCCTCGCTATAGAGGATTTGT 1831 30 100.0 36 .............................. CCTCTCCGACCTGCTCGTGCCCGTTCTGCAAAAGCT 1897 30 100.0 36 .............................. ACGACGAACTCGTCAAGAACCCCCGACGTGTGGATC 1963 30 100.0 36 .............................. CCGCTTCGAAGTTGGAGGCTTCTGAGCGCAAGCAGT 2029 30 100.0 36 .............................. TAACCTCTACGATGAGCGCACGACTCTGCGAGTCAT 2095 30 100.0 35 .............................. GCCATCATGCAGGCTTATGCGCAACTCGGCCCGAT 2160 30 100.0 33 .............................. TGCAGCCGTGCTGGCGCGTGCGGTGACCGAATA 2223 30 100.0 36 .............................. CTTCGTTTTTAAATTTTAGCGTTCGATATTTTATGT 2289 30 100.0 36 .............................. AGTACGACGCTGAGATACAGGCTGCGCAGGGCAATC 2355 30 100.0 36 .............................. CTGCCTTTGTGATAGAAACCTAAAATGTTCGTGAAT 2421 30 100.0 36 .............................. CACCCGACTTTCACCCCTATATGTAAATGTATGATT 2487 30 100.0 35 .............................. CGACAGAGTTATGGATTCCGCATAGTAGCCGAGCA 2552 30 100.0 35 .............................. TTGAGGTGCCAACCTACGCGGGAAGCACGTCCAAC 2617 30 100.0 37 .............................. ACGACCTTAGAGCGGCCTTTTTTAGGGGTGTAGGCGA 2684 30 100.0 37 .............................. TTTTCTTCCCTTGTCATTTTTTCCTCCTTTTTCCTTG 2751 30 100.0 37 .............................. CTTTATTTTCTATATCCTACGACCCAAAGTACAATAT 2818 30 100.0 36 .............................. CACCTTGATTTTCTACTTCAAGTATGGGGAGCTTAT 2884 30 100.0 37 .............................. ACAAACTTAAATGGATATCTCTCTATATTATCTATTT 2951 30 100.0 37 .............................. TTAAATTGGAGTTATTCCTATCAATAATGTATGAGTT 3018 30 100.0 37 .............................. TAAAAGGGATAGACTACATCAATGGGATTTTGATGGG 3085 30 100.0 35 .............................. TTGGTTACTATGGAGTGAGGCTCTGTACTGGACAA 3150 30 100.0 36 .............................. TAGGAGACTCTTCGGATAATTATAAATAAGAAGCTG 3216 30 100.0 36 .............................. AGGAGCTTGTTCATTAACCAATCTGATTCTATGGGT 3282 30 100.0 36 .............................. GGGTTGGAACCCTTTTATAGACGCGGAGTCTATAAA 3348 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================================================================= ================== 49 30 99.9 37 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TTATACAATGAATTAACAAACAAAATACACACCAATTGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGGAGTAGTATAATGGATACA # Right flank : GATATGCCGACTATGTGAATAAGAAT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 27-1503 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248373.1 Porphyromonas gingivalis SJD4 scaffold133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 27 30 100.0 36 .............................. ATATTCCACTTCCACTACCACTATCTCTGTTCCTTC 93 30 100.0 35 .............................. CACTCTATAAAAAGCGCGAGCGTCTATCCAAGATA 158 30 100.0 36 .............................. TTTGTCCCTGCAATAGAGAATTTAGTAATTTTTCCT 224 30 100.0 36 .............................. GCAAAGTTTCCCCGAAATGGGGACGCGGCATATCAG 290 30 100.0 37 .............................. AAGACGGGGATGGCTCAGCCCTCGATTAGCCGGTTTC 357 30 100.0 36 .............................. AACTATTCGGGAGGGAAGATATACAACGAGACCGAT 423 30 100.0 38 .............................. ATAATATCTATCGACTCGACAGATAGAAAAAAAGTTCT 491 30 100.0 35 .............................. TGTATCCCGAGCGGCTAAAAAAGCCGAAACAGCCC 556 30 100.0 34 .............................. GAGCACAAGGCCGGATATAGCCAAAGAGTTGGTC 620 30 100.0 36 .............................. TTCGCTCGGAGCTGTCCAATATGGGCATGGCCGAGA 686 30 100.0 34 .............................. AAGTCCATGAGCGAAGAGGAGTATTTTATCCAGC 750 30 100.0 37 .............................. CATTTGTCGACGAATGCTTCATATACACGGGGCGTTA 817 30 100.0 37 .............................. AGGAGATGAGTGGCGATGGCTTAATCGGGCGTCTGTT 884 30 100.0 36 .............................. CGAAGAATTCCTCGGAGTCGAGGACGGTATTTTCCT 950 30 100.0 37 .............................. TCTATCAACACGATTTCGCTCATCTTGACCAACGCCT 1017 30 100.0 35 .............................. AAAATGTGGGGAGAGAATGATCCATACACAACGTT 1082 30 100.0 36 .............................. ACTATGTCGTGCATCTGCTCCGGTCGGCCATCGCTT 1148 30 100.0 35 .............................. CTCCTGTGGGAGAGTGGCGAACTTGGAGCTCCTAT 1213 30 100.0 35 .............................. TATGAAAGGGTACGACAAGAGTGCGCTTATGAACA 1278 30 100.0 36 .............................. TTATGGCGGAGTTTGCTCTCAATCCCGTTTCGGGGG 1344 30 100.0 34 .............................. TAGCTGACACATCGATGATTGATGACGGGATGGT 1408 30 100.0 36 .............................. GGCATATTCCCCATAACATCTTCTATAGGCTTTTTA 1474 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : GACATCAACGGAACTAAGCTATTTATG # Right flank : ATGAAAGCCATAAGCAAAACTTCGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 3897-4236 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248255.1 Porphyromonas gingivalis SJD4 scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3897 37 100.0 41 ..................................... AGCAAGAGTTTGGTGTTGTTCGGTTAAATTACAGCTTCTGA 3975 37 100.0 35 ..................................... TTAAAAATAGTGAAGCCATTTGGAAAGAGTACGAG 4047 37 100.0 38 ..................................... TCATATATACCGTCCTGCTTGAGCCATTGTACGTTACG 4122 37 100.0 41 ..................................... AATTTACTCTCATCCAATACTTGGGACTTTACTATGTCTGT 4200 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 5 37 100.0 39 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : AGCCTGTCCGTCCCCCCGAAAACGACCGAACTTTCCTTTGCGGACAAATCCGCCTCTCCGAAGTTCACAGACCGGAAATGCTCCGATTGCGGCGCGTGTTTTCGGGAAAAGCGGCGCGAGAATTTTTTCGCTGTGGCGCGATAATTTTTCACTTCCCGAACCAAAACGAAAAAGTTCCCGCGCCACGTTTTTCAGAGCATCGATAGTCTTCTCCAAAGAGTCCGTTATCCACTTTTATAAGACCGCTACACAACTCGCTTGTGCGTTTGGCATCCTCGTAGATGTGTGAATACGAAGGATGTTTTGAGTTGTTTGCTGTTGTTTTTCTATCGGTTGGACTCTCCCTTTACTCCCCATTCGGAGGTTTAAGCCTCCGAATGGGGAGATTTTTCGTCTATTTCACGCCATAGAGCACAGAAGCCCGGGCATGCGCTTAAGATTGTAGGCCATCGCTTCCAGAACACTCTGTGTATGATTCGTTCTAACCCTCGGTAATCAGT # Right flank : GTACTTGAGCGACTGCAAGTTACGAATAATCCCAAACGTAACGCATTGGCAGAGAACGATTCTATTTTTTTCGAAAATACAAGTTGAGAAATGCAGCTACAACACTATTTTTGCAGTTGAGCTGATTATATCTCATTGATATACAATCAAATTACCTGATTTTCCGTTTTCGAAAATAAGAAAGAGGGAGCCTTCGTTTTTTAGATTTTCGAAAAATAGAGAAAGACACCGTTTGATAATCAAACACTTACAAATAGCGAAAAGCCTCTATTTTTCGAAAATAAAAGTCCCAATTCTCCTTTTCTCCTATTTTCGAAAAACAGGAGAAAAGAGTTGTTCTTGCAACCGACTGATAATCAATACGTCAAAGAGCGATGTGAGGTTCGATTTTTTTCGAAAAACTAAACCACAATACTTTTCCTTTTTCTCCGGCTCTTAGGGAGGGTCGGATGTCCGCTCATCCAAGCAGCGGTGTAACAATGCTGACAGAGAGGAAGAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 27-975 **** Predicted by CRISPRDetect 2.4 *** >NZ_KZ248291.1 Porphyromonas gingivalis SJD4 scaffold50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 27 30 100.0 34 .............................. AGAAGTCGGATTTTAGAGATTATTGGATTAGTCG 91 30 100.0 35 .............................. TAGAGTGCAAACTTCGTGATAGATTCTATACAGAG 156 30 100.0 35 .............................. TCTCTTACTTTTGATGGATATGTCTAGAGTATTGT 221 30 100.0 37 .............................. CCTATGACGAATCAGGAAATAGAATTTCCATTTTCCA 288 30 100.0 36 .............................. CAAACGGACTAAAAGCAGTCGTTATTGTATTAGCTT 354 30 100.0 36 .............................. ACAAGCCGACCGCCTGCGCGACCAACCATAAAATTT 420 30 100.0 36 .............................. CGGGCGCGGCTGCGGCCGCTGCGGGGCTGTCCGTCG 486 30 100.0 36 .............................. AGGTCTGTAAGGTGCTGGCGGAGGTCATGCGGGCAA 552 30 100.0 35 .............................. ATGCTAGCAGGGGGCTGGAGTGCTTATACGACCCC 617 30 100.0 36 .............................. TTTGTCCCTGCAATAGAGAATTTAGTAATTTTTCCA 683 30 100.0 35 .............................. ACTCATTGACACGCATGTGTCATAGCAATATCCTG 748 30 100.0 35 .............................. TCAACGGGATGTGCTTGTATGTTTTTTTTTCTTAA 813 30 100.0 36 .............................. AAGGGATATGCGAAGTTTGAAGAGGCTGTCACGGAC 879 30 100.0 37 .............................. CGCCGCATCGTCGATGATCTCGTCCGCCAGCGAGGCG 946 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 100.0 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : TAAGCAAAACTTCGAGCGCAAGAAACG # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAGAAGGTTAAACCCAAAATTCAGATATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGTCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA //