Array 1 136194-135248 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOG01000082.1 Escherichia coli strain HT2012018 NODE_296_length_396474_cov_30.713041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 136193 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 136132 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 136071 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 136010 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 135949 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 135888 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 135827 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 135766 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 135705 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 135644 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 135583 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 135522 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 135459 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 135398 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 135337 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 135276 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 163347-161976 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZOG01000082.1 Escherichia coli strain HT2012018 NODE_296_length_396474_cov_30.713041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163346 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 163285 29 96.6 32 ...........A................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 163224 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 163163 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 163102 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 163041 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 162980 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 162919 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 162858 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 162797 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 162736 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 162675 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 162614 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 162553 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 162492 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 162431 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 162370 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 162309 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 162248 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 162187 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 162126 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 162065 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 162004 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //