Array 1 239603-240051 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUYI010000003.1 Hafnia alvei strain FME31 NODE_3_length_290923_cov_210.643, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239603 28 100.0 32 ............................ GTTTGCAGCACGCTCATTGCGCTGTCTACCGC 239663 28 100.0 32 ............................ AATACACGAGGTTCATATGGCAAAAGTAGCAG 239723 28 100.0 32 ............................ AGCCACAAATACGTGAACAGATTTACCCGGCA 239783 28 100.0 32 ............................ ATGTCCATCTACGGCGGCTTCGTAAAGTACAT 239843 28 100.0 33 ............................ CTACATCCGAGAGCGTGACTCAGCAGAGCCATG 239904 28 100.0 32 ............................ TTGCCGTCGAGCTGCATCCCCTCGCCTTGACT 239964 28 100.0 32 ............................ AATTCAAGTAACACGTGGAGATCAACCGACAT 240024 28 78.6 0 ....................A.A.TTCC | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCTGAAAACGCCCTACAGGCAGCCAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAAGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGCTGAGAATAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : CTCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGCTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCTGCGATTCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAACGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGCGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATGATCTGTTAAAACTATGCACTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28009-27019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUYI010000009.1 Hafnia alvei strain FME31 NODE_9_length_185586_cov_200.186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28008 28 100.0 32 ............................ TGAATGCCGGCGGCGATAAAACGGGTTGCCGC 27948 28 100.0 33 ............................ TTGGTTCACAGGCCGCGAACTAGCGATATCACA 27887 28 100.0 32 ............................ AGAAGGATAGCCATAAGGCTGTATATCATTAT 27827 28 100.0 32 ............................ AACTCCATGGACAATCAGCTTAAAAAGCTAAA 27767 28 100.0 32 ............................ AGTTTATGACGCAACAGCAACAGCGTGGTTTG 27707 28 100.0 32 ............................ CATTCGGGGTAGAGCCGTTGCTGGCAGGTCAA 27647 28 100.0 32 ............................ GTATGCAAGTCCTTTGCTATTCCCAGTAAACG 27587 28 100.0 32 ............................ AACTGGTTTGCTGACACAGTCCATGTCGGGGT 27527 28 100.0 32 ............................ TATCACAACGTTCTATACGCCATGCTTATTCA 27467 28 100.0 32 ............................ TTCTCATCACTGCCCTCGTCAGCAGGATCAAA 27407 28 100.0 32 ............................ ACGAGTTTAGCGCAGCGGATACGCTAGCAGAA 27347 28 100.0 32 ............................ TTATGAGCAAGTGTACTTGCTAAATCAGCAGC 27287 28 100.0 32 ............................ TCATTTATACGCCAGCTGATGGCGATATTTTT 27227 28 100.0 32 ............................ TGTATGCACTTCTGAAAATGCCCGTAGCAAGC 27167 28 100.0 32 ............................ CAATATTCCATGGGCTTGTGTTGGCGTCCCAT 27107 28 100.0 32 ............................ ATCAGGTAACACCGGTTCCATGCTATTACCCC 27047 28 92.9 0 .....................A..A... | T [27027] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGAGATTAGATGAGCTGGAAGCGTTAATCTGCCCCCAACTTTCCTGTGAGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCTTTTTTTTCGCCTATTTATAACCCTTTAATTTTATGTGAGAGTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : CAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGCCTCCGATCAAATAAAAGCAAACGCTTTCCTAAATTATAAATTCCTATGAAAACATAATCATGCTAACTATATTTTTCGTGCGATTTTGTGATGGGTTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATTAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTCTGAAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCGGTCGTTTTTACTTCGGTGTTACCGAAATGTAATA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 98300-96529 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUYI010000009.1 Hafnia alvei strain FME31 NODE_9_length_185586_cov_200.186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 98299 28 100.0 32 ............................ GCCTTGCAACGGCAATCGACAAGCTACCCATT 98239 28 100.0 32 ............................ GGGATGATGTATTTTCAAAACATTGAAACCGA 98179 28 100.0 32 ............................ TGCGTAAGCGCTGAACCGTCGGCCATCAATGA 98119 28 100.0 32 ............................ ATTAGGCACGTCGTATGTAGAGTTAGGCATCA 98059 28 100.0 32 ............................ CATTCAAGAGCCCGCCGCGTGCGGGTTTTTTT 97999 28 100.0 33 ............................ GCTAAAAAAGCAATAATAATATGTTCCATTTAA 97938 28 100.0 32 ............................ TTCATTACTAGTAATCGGGTGATTCTTTCTGT 97878 28 100.0 33 ............................ GTGCGTTAGAAGGTAATCGGTACTGCCGACTAA 97817 28 100.0 32 ............................ TGCAATAATATATTTTTTAAACTCTGCAACGC 97757 28 100.0 32 ............................ CGCAGAATTCGCCTCCGCTGAATTTATCTAAT 97697 28 100.0 32 ............................ TCGCAACAAGGACTACAGATGACAGACGAACG 97637 28 100.0 32 ............................ GTCAGGGAAAAGAAAATCTTTGCCATAAATTG 97577 28 100.0 32 ............................ ATCCGGCGCAGCTTTGCGAAGCTTACATAACT 97517 28 100.0 32 ............................ TGAATCCATTAGGAATTTCTGAGTAGCCTTCA 97457 28 100.0 32 ............................ ACAAATACAACTGCGGCAGCATTTACGGCAAA 97397 28 100.0 32 ............................ TCACCAATGGTTGGATTGGACGGTGCTACACG 97337 28 100.0 32 ............................ TAGAATGCCTGCAATAAAATCTAATATCCTAA 97277 28 96.4 32 A........................... TACGGTTAGCGGGGATGGCTCCAGCGTTACTT 97217 28 100.0 32 ............................ AATCGCTGCCGCTCCACCTAATGTACTGATGG 97157 28 100.0 32 ............................ CATCGGATAGAGCCTTTTTTCTTTTTCACTAT 97097 28 100.0 32 ............................ AAAGCGCACATGACATCAGTGTTAGTTAAAGC 97037 28 100.0 32 ............................ AACGAAGGCACGTTAACGATTTGGGGGCTCAC 96977 28 100.0 32 ............................ GCAAACTGTTCAACGCCGCGATTGTCTTTTAC 96917 28 100.0 33 ............................ TGCCAATCTAGAGGATGTGTGAGTGCGGTTGGT 96856 28 96.4 32 ...A........................ TGTCAAACCTACTCAGCCACCGGCTATCCCTA 96796 28 100.0 32 ............................ TTCAACAAAGACTTTGCTGCGATCCGATGACG 96736 28 100.0 32 ............................ GATACACTGGGGCACCGCTTGGTAATTCATAG 96676 28 100.0 32 ............................ AGCATTTGAGATTTAGCGAGAATGAGATTTGG 96616 28 100.0 32 ............................ ACTACACGCAACGGATCATATCAGGAGGAATC 96556 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACAGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGTTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGCGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CTCACCATGGTTTGTGTTTAATTTTATTGGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGCTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTCGGTTTTTGCGGCGGAGGGGGAACGCCCTTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //