Array 1 1095447-1096017 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR699008.1 Hafnia alvei isolate MGYG-HGUT-02508 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1095447 28 100.0 33 ............................ CAGTTGGCAGATACTCAACACGCATTGTTACTG 1095508 28 96.4 33 ..................G......... CGCTGAAAAACGTCCTCAGTCAAGAGACAGTTA 1095569 28 100.0 32 ............................ ACGCTTGCCAGTTCCTTCTGGTTTAACAGGTT 1095629 28 100.0 32 ............................ AGGCACATGGAGAATACAAACAGCCAGTCTAG 1095689 28 100.0 32 ............................ AACAATTGGTGAAGTTGCCGAATTAATGGGAT 1095749 28 100.0 32 ............................ TTGCCGTCGAGCTGCATCCCCTCGCCTTGACT 1095809 28 100.0 32 ............................ ACCGAGACCACCCATTGCACCGAAACCATCAC 1095869 28 100.0 33 ............................ CTGTCGCCGCTGCCATGCTTGCGGGGTTTACAG 1095930 28 100.0 32 ............................ TTTAAACAACGGCTCTATCCCGGATGGACGAA 1095990 28 67.9 0 .C.......T.......T..A.A.TTCC | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGATTTGATTGGGATACGCTTGGCCCCGTATTAGGCAAGGTGTATGAGGAGATCGACGAAGTGATGGATGAAGCGCAGCAGGCGGTGGTGGATGAGGAAAAGCTAGGCGAAGAAATTGGCGATCTGCTGTTTGCAACGGTGAATTTATCGCGTCACTTAGGCCATAAAGCTGAAAACGCCCTACAGGCAGCCAACCGCAAATTTGAACGTCGTTTCCGTGCAGTAGAAGATGCAGTGCGCGCCTCGGGCAAAACCATGGAAGAAGCCACGCTTGACGAAATGGAAGCGCATTGGCAGCAGGTGAAAAAGGCTGAAGGTAAATAGTCAAAATCGCGTTGGTTAAAGTGAAAAGGGCTGACGTGCTGCGTTAGCCTTTTTTTTCTGCCTACTAGTAACTGATTGATTTTAAACAGGATGAGAATAACGCGCAGAAAAAGGGTATTTTGAATTTATTGCGCGAAATCGCTTTATTTTCACTCAGCTAGTCATAAAATCCAGCA # Right flank : CTCGCCACTCTATTTTTTACCATCTGGTTGCAAAATTCCTCGTGTGCCTAGTAGAAACAGCAACGTCATTAGTGCCATAGCCAGTAGACCTGCTTGGCTAACACGGGCTCGAGATTGTTGGTAAAGCTTGGTGATAGTGGGTAAGTCTTGTTTGGTTGCTCCAGACTGCACTAACAGGCTGCTGAATCCTTGATCGCTGAGATAGGGAAACACGGTCATATTTTGTATGGTAATGCGGGTCTGAGGTGTGACGGTGATGTCTGCGATTCGGTGTTTCATGCTAAACGTAAGCGTAGTAAGCATGACCGTACTCACCAACGCTACACCAAGCGCTTGACCAATATCACGGGCGGCAGACTGAATTCCGCCTGACTGGCGAGCCTCTTTTTCCGGTAATGCACTGGTGACCAAATATGGTGCGTTGGCTGCAATCACTCCCATGCTGGAACCGATAAAACAAAGCCCGACAATAATCAATAATCTGTTAAAGCTATGCACTC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2753016-2752507 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR699008.1 Hafnia alvei isolate MGYG-HGUT-02508 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2753015 28 100.0 33 ............................ CACATAATGCAGGGCTTGATTAAAACGATTTAA 2752954 28 100.0 32 ............................ AACTACTTACACAAAAGATAGTTCAACTGTCT 2752894 28 100.0 32 ............................ TCTGATGAAAATGACAACGAGGATAGTATTAT 2752834 28 100.0 32 ............................ ATTCCCATTAATTGTGGTGCAATGCTCACAAA 2752774 28 100.0 32 ............................ GCTGGATGGGGGCTTGCTCGAGCTGAATCATT 2752714 28 100.0 32 ............................ ACCAAACACTGGTATAGGGATATTAGAAGTAT 2752654 28 100.0 32 ............................ AGTGTAAATTTGAGTTTCACCAGTTGAACGAA 2752594 28 100.0 32 ............................ ATAGTCGGTATGGAAACACAACGCAACACACC 2752534 28 92.9 0 .........................GT. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCCGCCTAAGCGCTTTGGCTCCCCGCTGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGAGATTAGATGAGCTGGAAGCGTTAATCTGCCCCCAACTTTCCTGTGTGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACGAACCCTTTTTTTTCGCCTATTTATAACCCTTTGATTTTATGTAATAGTTTATCACGTAGATAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTTGAAGCTTTATACGAATATTCTACA # Right flank : TTTTGCCTCGGTTTCGTATCCGTGGAACAAAACGTTCAAATAAAAAACTCACAGGGATGACATGAGTAGATTATTGATATTACTATTTTTTATTTCTTCACCCGTCTTTGCTGTCAGCGATATTAACAACGCCACAAAGGCGGCTCTAGAATTCAATAAATGGTATCTGCAACAGATTGAAAAAGATGTCTATCCGCTGCTAGGAAATCGTAGCCCAGAAATGAGTGAATACGTAACCGCAGAGACGTTGGGAAAGCTGCATAAGGCAGTGAATAGCGATGATGAATTCTATGACGCCGACTTTTTTACTCGTTCACAAGACATTGGGGCTGATTGGCCGAAAAATGTCACCGTGGTTTCTTCCGATCTCGATCCGGTTTGCCTGAATGTTTACGTTGCTTATGGGAAAGATATGTCCCACACGGTCATTGACTGTATGGTGAAGGAGAAAGGGAAGTGGAAAATCCAGTCGGTAGCGCAGCAAGCTATCGTGCCAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2812926-2812118 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR699008.1 Hafnia alvei isolate MGYG-HGUT-02508 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2812925 28 96.4 32 ...C........................ AATACGTGGTGCGATCCTAAAATCGGCGTTTC 2812865 28 96.4 32 ...C........................ CAAGGGCGTGCGCCGTTCCGACACACGACGAC 2812805 28 96.4 32 ...C........................ GTCACCGCCGATAGTTAAATATTCCGCGCTTG 2812745 28 96.4 32 ...C........................ AACGCAAGCAGGATAGCAAGGCACCCGATTGA 2812685 28 100.0 32 ............................ TCACCAGTGGTGGAATTACTATTTCCCAAACC 2812625 28 100.0 32 ............................ AATCGTGCGGTTTGCATCTGCTAGCGTGTTAG 2812565 28 100.0 32 ............................ GTCGTTCGTGCGCTCAAGCTTCGCGCTCTCAC 2812505 28 100.0 32 ............................ TTTCAATAGCCACGCATAGCGGCTGTTAGCAT 2812445 28 96.4 32 ................A........... TTATTAACATGCGCTTGCTCTGCCTTTTTCAT 2812385 28 100.0 32 ............................ CGATCACAAATGCAGATACGGCAGCGGAAGAA 2812325 28 100.0 32 ............................ TCGACTATCCCGCCGTTTGCAACCTCACCCGC 2812265 28 96.4 32 ...C........................ GCGCCAATCGTCACGCCGTTTACATGCATTCC 2812205 28 96.4 32 ...C........................ CAATGCGTCAGCCAGTGCTTGTGCGCCACCAA 2812145 28 78.6 0 ..........T..........CA.A.TT | ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.7 32 GTTAACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAGGTGCGCAACCATAATCTTGGCGATAACGTCAGCGCATTGACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGCGATGAAATTGTATTCGTTGGCGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCATTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : ATCATCTGCCCCATTTTCACTATACTTATTTCAGCGCTGCATCTTTGTGGCAGCATGCGAGCTAACTTTCGCTGAGCTAAGGAGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGGGATGAAATATGGTTTATCTGCAATCGACACCTACGAACGGTTGCGCTTTTACCTGATACCACCGACTTTAGGCGTCCGATTGTCTATTGAGTATGGGCGCGGGTGTTCCAACTGCTGTATTTGAATGAAAAACCATCGCCCTAGACGCCATCCTATTCCCGACGTATAAATATTCTCAGGCGTATAACGAATTAACCAACGTGTGAGGAGTTATTTGATGACAGCATTAGCCGTGGTTTTTCA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //