Array 1 994883-993921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085955.1 Finegoldia magna strain FDAARGOS_1557 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 994882 36 100.0 30 .................................... TTTATCCTCGTCAAACTCTTTTCCACACAC 994816 36 100.0 30 .................................... TATGGTGGAGATGAGGAGTATCGTACGAAC 994750 36 100.0 30 .................................... AGTACGAATTTGGATTTACTCCAAACGACG 994684 36 100.0 30 .................................... GGATTAGGTGAACATACAATTACAGTTACT 994618 36 100.0 30 .................................... TCAAACTTGATGAGGTCAAGGATTTGATTT 994552 36 100.0 30 .................................... ATTTCTACACGATTTGTTTCATCATTTGAA 994486 36 100.0 30 .................................... TTGCTATTTTTGTTTTAATCTTTAGTTCCC 994420 36 100.0 30 .................................... ATACTGATTAATCTGAATGGTTTGAGTGAT 994354 36 100.0 30 .................................... ATTGTTTACAAGCTCCCGAATATAAGCTTG 994288 36 100.0 30 .................................... TGGTTATAAAAAACCGAAAGCAGAAGTGAA 994222 36 100.0 31 .................................... TTTGATGACTACGAATTGCAAGCAGTGTATA 994155 36 100.0 31 .................................... AATGATAATTTAAAAGAATACTTAATTTATA 994088 36 100.0 30 .................................... GAGTAAAACATAAAAAGATTGAGTATGTTG 994022 36 100.0 30 .................................... CTGAAAGTTTAGGATTGACGTTCGAGGACA 993956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 15 36 100.0 30 GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Left flank : ACAAGAAAATCACTACGAAAATTATTAAAGATTTAATGGAAATTATCTCAGATGAAAAACATTACGAACAAAAAATAAATTTAAACTCATCGATTGTTAATTTTATTAACGACATTACACTAGATTATCCGTATATGCTAGAAATTGGTGATGAAATAAATTTTGAATCTTTATTAAAAGTAGTACCAATTAAACCAAGTGTAGACTACACAGATTTCCTGGATAAATTTGTTTCTTTTTTAGACATTTACCAAAATGTTTTGAAGATAGATGTATTCTACACAATAAACTTATTGCAGTATTTTACAGAAGAAGAGCTCAAAGAATTATCTGATTACATTAAAATTAAGAACATTTGCATAATAAATTATGATAATATATTAGTAGATAGCAATTACATTTCCAAAAAATTGCTGTTTGATAATGATTTATGCAGAGTTTTATAATTATCTATATAAAATTACCACTTTGATGGAGTGATTCTACCTCATGGATTTGAG # Right flank : ATCTTCGTCCACGCTTTCAACGTAACTCATGCTTAAGAATGATATAATTATAGCGATTAAGAGGTCAAAGAGGTGCTTTGTATGAATAACAAAAACGACATAGATAGAGTTCATGATGATGTTTTTAATAGCATAAAAATATTGATGGATAAGGCAAGAAATGAAGTTTTTCGTGAAGTCAATAATATTTTGGTGCAAACTTACTGGGAGATTGGACGCATTATCGTAGAAGATGAGCAAGGTCATTCAGAAAGAGCAGAGTATGGGAGAGAGCTTATAAATGACTTGTCAAGGCAACTTACAAAGGAGTATGGTAAAGGATTTTCTAAGTCTAACTTATTTAATATGAGAAACCTATATTTATCATATCCAATATTCCAGACACTGTCTGGAAAATTGACCTGGTCACATTATTGTGAACTCTTATTCATTAGCGATGAGAAAAAAAGAAGTTTTTATGAAAAAGAAAGTATCAACGCAAACTGGTCAGTAAGAGAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTGAGAATGATGTAATTTCATATAGGTATTAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 39367-40053 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085956.1 Finegoldia magna strain FDAARGOS_1557 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================= ================== 39367 28 89.3 33 G............A...........T.. GATTATTTCAAGGAGCGAAAAAAGTATCTATGA 39428 28 96.4 33 .............A.............. GTTATAAAAAAAGATTATAATTATAACTTTATG 39489 28 100.0 34 ............................ ATTTAAAACATCTTCTTTTGCATTTGACACAGCA 39551 28 89.3 33 .G....................A..T.. AACTCTAAAAACAAAGATAATTTCAACAATAAG 39612 28 92.9 32 ...........A.A.............. AAGAGAACTAAAAAAATGAAGAATCGAATAAG 39672 28 100.0 33 ............................ TTTTATCTATGAACTTTTCGTAATAAATACTTA 39733 27 85.7 81 .......A...-....A..........A GAGGTTATTGAGAAAATATTAAATAATCCTAAGTTTTCTTGCAATAGCAGGTGTGTTCCCAAAGCATTAACATTAACAATG A [39747] 39842 28 96.4 33 .........................T.. ATAGGATTGTTATGTTACAGATTTTGTCCACAG 39903 28 85.7 33 ...........AG...A........T.. GTTAATAATGTAAATAACAACAACGGTGTTGAG 39964 28 100.0 33 ............................ AGGGAAGATACTGGAGGCCCTAAAACAGCACAA 40025 27 92.9 0 ....T......-................ | A,A [40033,40040] ========== ====== ====== ====== ============================ ================================================================================= ================== 11 28 93.5 38 TTTTACCCGCACATGCGGGGGTGTTCCT # Left flank : TTCAATCAGGTTATGATAAGTTAGTTAAAGATAATCAAAAAGCTCCTGTCAACAAAGCTGTAGTTGAGGGTGTTTTAGCTGTTAAAGATGTGGATAAATTTAAAGAAATTTTAATTAATGGTTTTGGCAAAAGAAAAGCTTATGGATATGGGCTTATGACAATTTTGCCAATAGCTGAAAGGAGATAATTTATGATTAATAATTACAAGGCAATTGTTGATTCTGAGTTGACTAAAAAAAGCAAACATGGTCATGACAGATATGTTATAGTAGACATAGAAACAGGCGAGATTTTAGACGATGCTCAAGGATATGGATATAAGTCCAAAGAGGGTGCGTATAAGTGCTTTGGATATAAAAGAAAAAGAGGCGATCTAAACTAGCTTTCTTGCAATAGCAGGTGTGTGACGATTGGAAGTGTCCAAAAAATTGTTTCTCGCAATAAGCGAGTGTTTCCCTCTATATGGGATAAAAACAAACTCGTAATCTTTATTATCTTT # Right flank : TATGTATGAGGATTATCAAGATAAGTTTCTCGCAATGGCAAGTGTGTTTCTTTATATTTAAGAGTATTTTCTCGCAAATAGCGAGTGTAGTCCAAGAATATTTTTATCCTTTATTTTTTCTCGCAATGGCGAGTGTCGGTACATCATATAGTGCTACATATAATTAGTCTACTTGTCATTTGTCGATATATTACATATAACAAAGAGATAAAGGAGAGTAGGTCATGAAATATATGTATGGAATGAAAGTACGTGGGTTTTCTCTGGGTTGTCAACCAAAAGACGGATTATTGGGATTGTCGGACAAATCTAGTGATAAATACTACGACATAATCGAATATTCGAGAAAACTGACAGAAGAAGAAATCGAAAAATACGAACTAGTTCCAGTAGAATAAGTGAAATTAAGAGAAGATTTATTTCTTCTCTTTTTTTTATTGGTACATTAGCTAGATAGAATAACTAGTTCGCACCCTCAATAATTACGCTATATTACATAC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTACCCGCACATGCGGGGGTGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //