Array 1 23628-24202 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARW01000005.1 Gilliamella apicola strain N2 NODE_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 23628 26 100.0 35 .......................... CCGCTGATTACATCCTCATTGGTTGGTTTCGCTGA 23689 26 100.0 35 .......................... CCGACCAGTGCATTAAACCAAACTCTGCCAACCAT 23750 26 100.0 35 .......................... CCGATTGTAAATCTCGCAAATAGATTGAAAAAAAA 23811 26 100.0 35 .......................... CCGTCGTGGCAATTATAGAGGTTATGCAACGTTTT 23872 26 100.0 35 .......................... CCGGTCTGCTGAATTAGAGTACGCACGGTTATCAA 23933 26 100.0 35 .......................... CCGCGCGGAATACTAATTATAAAAAAATTTTCATT 23994 26 100.0 35 .......................... CCGATGTGAGCATGCCCTTTGTTTGTAAATCGTAT 24055 26 100.0 35 .......................... CCGAACGCAGTAAATATTATGCTGAATTCAGCCTT 24116 26 100.0 35 .......................... CCGATTCTTTTAGAGCTTTAACACCACAAAAAGAC 24177 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 10 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TTTAAATTAAACTTAAGGTGAATTTAATTTCATCAGAAGAGTAAATTATGATAACCATGACGATACAATTACTAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAAGATGTCAAAAAGTTTCAGGTTAACCATACGTTTCAGTATAAAAATCAATAAACAATTTAGCTTAACTTAACCTTATGTTCCCTGTACGCACAAGGATAAATCGGCAGGCATCAATATTACATAGTATTTTTTACTATTCAAAAAATCACAATTATATATTTCATTGTTTACTTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCTCGTAGAATGAAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : ACCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACAATATTGTTAATTTAGGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTCAAAAAAAATTATAAAAAATCTTCTAAAAAAGGGATTTAATTATCATAAATCAAATGATATGGTTGATTTCTCGAATCTTCGAACTTTTCCCAAATCTTATGGGTCTTACGATAATTTTTTGAGTATCAAACAATTTATTTTTTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAACAATTATAATGATAAAACATTTAGAAGTTACATCAAACTATTTGCTAAATCCAAAATGTCGAAATTGAGATAAAGATTTTTAGTTGAATTAGTTAATGAAGTAAAAAATTCAATTAGTTCTGTTAACCAAATAATTACTACAATAATAATTCATGATGATAATAAATTGCTTTTAGCAAAGAAAAAAAGATTTGCTGCCCCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7337-7665 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARW01000027.1 Gilliamella apicola strain N2 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 7337 26 100.0 35 .......................... CCGTATCGCGTAGGGCTGTTCGAGCTGGTGCTGTA 7398 26 100.0 35 .......................... CCTGATGCAGGCCGTAATACAGGGGATTTGCATGG 7459 26 100.0 34 .......................... CCGTAACGGCGGGAGTGTATGTTTCCATGAGTTC 7519 26 100.0 34 .......................... CCGGAAAGGGGGGGCGTTCGCCATACCTAACATG 7579 26 92.3 35 ............C.T........... CCGGCAGAACTAGACACAGAAGCAATCAGTGGATA 7640 26 88.5 0 GC...........G............ | ========== ====== ====== ====== ========================== =================================== ================== 6 26 96.8 35 ATGTTCCCTGTATACACAGGGATAAA # Left flank : TAGTATAAAAAAATCAATAAATAATTTATTTTAAATTTATGGTTATAAACAACACACCATGTTGAGCTAAGATAAACGTTTACTATTAATATTGAGTAATAGCTTACAAATAACAGCGTTTATAAAATTATTTCAATTCAAAAAAATATATTGAATTACTCAAAATTACAGAAATGCACTTTCAAAAAATGAGTACTTGAGATTAATTTGTGAAAATTTTATAACTAAACTACATCAACAAACAACTTAAAAAGTAGAGTTATTTTGATAACAACAAATCATTAAAAGCAGAACAATAAAAATTCCCATTTTTTAACTAAATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTCTAATTAATTAAATAAAAACAGTGTGTTATAAATACAGATTTTAATACAAAATAGCCTAAAAAATTGGTATAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ATCATAATAGATTAGAAGTTGTTAATTTTATATGAATGGATTCTAAATATTATTTATACGACATATATTTGATTGATTAATGAGTTTTTAAGGTTTGCATGGTAAAAGTATAAAATAAATGAATTTTTACCTATCAGTATAGATAAGCAACTAAACTTATAAATACAAAGTTATTTTATTGATTATGCTCAATAGCGCTTACAGAATTTGTTTTGTTTATAACTGCATATTACGATCTCTTTCCATAAAATAGTTTATGAAAAGTCTTCATTTCAAAAGGAATTAATAATTTATTCACTTAACTGCTTTGGTGGTTTTTTATTGCCCAAATTATCTAAATAAAATACTATTACCCAAAATAAAATTTAAAGTATGAAAAAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAGGAATGAAAAATTTAATTGCAATTTCAATATTAACTTTGATCGGTTTCAACGCTTTTGCTAATGATAATGCA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9314-9464 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARW01000027.1 Gilliamella apicola strain N2 NODE_27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9314 29 100.0 32 ............................. GGCAGGAAACTACGAGCGCTGAACCGTCGCTA 9375 29 100.0 32 ............................. AGCAGAATAATGGGCGATTTGTAACAATACCT 9436 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AACTGACTAATTTCTATATTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTTAGGTTATTGGCATATGCATTAATTTATCATTTATCTATAATAATATATGGTTTTTTGTGTACCCAGTATGTACAGGGATAAACCGAATATGCCGAGCAGGCGAGAAAGCTGTCTCTGATGTTCCCTATATATACAGGGATAAATCGGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACTATCTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTTCGTAGAATCTAACTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTGGTAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GCCCTAGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCAAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGGTAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAAGAAAATAATTTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACATATTTAATGATTGAGGAATATATTAAAACTCCAAATGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66253-65736 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARW01000009.1 Gilliamella apicola strain N2 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 66252 26 100.0 35 .......................... CCGGTAACTAAGGTCAATAACACGGATGTTACGCT 66191 26 100.0 35 .......................... CCGGGTTAGAATTTAGTACATTTGCAGAATTAAAA 66130 26 100.0 35 .......................... CCGTTAGCAGTTTTCATAATATCATCAATAGATTC 66069 26 100.0 35 .......................... CCGACACGGATATTACCATAGGCGGAGATTTCGGT 66008 26 100.0 35 .......................... CTGGGCGTATAATTGATCGCCCTTAGTTAATAGGT 65947 26 88.5 35 .............G..T.T....... CCAAAAATGAAATCGATTACAGTTTTTGTGAAATC 65886 26 92.3 37 .........A......T......... CCGCTATAGTAATGGTACGCACAGATAATGCGTACGT 65823 26 96.2 36 ..............G........... CCGGTTATATATTTGCACTAAATTACGCCCTTCGGC 65761 26 96.2 0 ........................T. | ========== ====== ====== ====== ========================== ===================================== ================== 9 26 97.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATGATGCCCTGCCACCCGCTATCCCAGAACCTCAATCTCTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTATTGTGGTAACTGAAAATGTTCCACCACGATTACGTGGACGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATTGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTAGCAGAAGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTTGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : TAGTTAGATTAATTAGGTAAAGTAATGAAAGGCTTTTAGCTACAGGGTTATAAGCATATCTTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACCAATAATAGACATATATTTACTTTTATATTTTCATTAACATAAAAAATCGAATAATATTTATTAAAAATCTTGGATAGCTGTAAAATTCGTTTTAAAACACTAAAAATAAAGGTAACAGTTAACTAACTAAACTAATAATCAAAAATAGCGTACAATAGCGCGATATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTATTGAAGGTGCGGGTAAAACGACAGCAGTCAATACCGTTGCTCGTATTTTAAATCAATATCATATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCAATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTAGATGATGAACCTTTGACG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //