Array 1 287273-288562 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065948.1 Pseudomonas aeruginosa strain PAM68 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 287273 28 100.0 32 ............................ TCGGCTTCCCTGGCGCGCTTCTCAGTGGCTTC 287333 28 100.0 32 ............................ TGGAACGGGTGGTGGCGGCGATGGTGATGGCG 287393 28 100.0 32 ............................ ACAGACAGCACTCTGCGAGACGACATGAACAT 287453 28 100.0 32 ............................ ATCGGCGGGGATCGATCGGGTCTCTTTTCGTG 287513 28 100.0 33 ............................ GCGCAAGCGGGCAACATAGAACTTTCCACTGAT 287574 28 100.0 32 ............................ TGCAGACGCTCAACAGCGCGAACCACTACACA 287634 28 100.0 32 ............................ CCCTCGGAGTTCGAGGTATCAACGGTGATGCG 287694 28 100.0 32 ............................ ATTGCGAAGGCACAGCGCGGCTTCTGCGATGT 287754 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 287814 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 287874 28 100.0 33 ............................ TACGCCCTCGTTTGGGCCGCCATGGGCCTAGAA 287935 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 287995 28 100.0 32 ............................ ACGCAAAGCCTGTCGGATGCGGTCAAGTCCGG 288055 28 100.0 32 ............................ TTCTTGAGTACGGCGACCAGTACGGTTTTTGG 288115 28 100.0 32 ............................ GACGAGGAAACCCGAAACGCCGTCTCCAGCCT 288175 28 100.0 32 ............................ AGTACCACGTCGACGCTGTGCATCTGCATCGT 288235 28 100.0 32 ............................ TGAACGGAATGCCTTTGCTCGGCAGCGAGGCT 288295 28 100.0 32 ............................ AACGGCGCCGGGGTGGTGGTGGCCTATCCGAT 288355 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 288415 28 100.0 32 ............................ TTGGTGACGTCGCTGACCACCCTGATCGGCGC 288475 28 100.0 32 ............................ ACTGCCCGCCGGTCGAGTGGTAGCGCATAAGG 288535 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1656111-1656977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065948.1 Pseudomonas aeruginosa strain PAM68 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1656111 28 100.0 32 ............................ CACCAGCACCGAGTTGGACGCCGACACCGAGC 1656171 28 100.0 32 ............................ CGGAAGAAACGGCACTGCACCGCAGTTCGGCG 1656231 28 100.0 32 ............................ AAGACGCGATGACCCGGGCGATGATCCACCGC 1656291 28 100.0 32 ............................ AGATTCGCCGCGTCCAGGCCGTCCATTTGCGC 1656351 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 1656411 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 1656472 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 1656532 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 1656592 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 1656652 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 1656712 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 1656772 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 1656832 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 1656891 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 1656950 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1666490-1665502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065948.1 Pseudomonas aeruginosa strain PAM68 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1666489 28 100.0 32 ............................ AACCACAATCCAGACCCGCGCTACCTGCGCGG 1666429 28 100.0 32 ............................ CGATGCCGGGTTCGACGGCAGCCCGATACAGA 1666369 28 100.0 32 ............................ ATGTAGCGCCGCATGACTGGGCCGAGTGACGC 1666309 28 100.0 32 ............................ TTCACTAGAGCAGCCAATCAGATTTATGTCTT 1666249 28 100.0 32 ............................ ATGTGGCCAGCATTCACTTCAGGATCCAGGCC 1666189 28 100.0 32 ............................ TCCGGGACTTCATCCGCAGGGTGGTCGTGCTC 1666129 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 1666069 28 100.0 32 ............................ CGGAGAACTGGGTCGCGCCCCGCCCGACAGCC 1666009 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 1665949 28 100.0 32 ............................ CTGGAGCGTGCCAAGACCCACCTTGGCATGGA 1665889 28 100.0 32 ............................ TGGACCTGGGCAAGCTGATGAAGGGCCAACTG 1665829 28 100.0 32 ............................ TGCCGCCGCTACGACTTCCAGACCATCACACC 1665769 28 100.0 32 ............................ TTGGGAAGTACTCAAGGATCTACGCCGCACTG 1665709 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 1665649 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 1665589 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 1665529 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //