Array 1 1124778-1122535 **** Predicted by CRISPRDetect 2.4 *** >NC_017161.1 Hydrogenobacter thermophilus TK-6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1124777 30 100.0 36 .............................. TTAATCCGTCAATAAGTTCCTCGCTTGCTTCCGGAA 1124711 30 100.0 37 .............................. TCCAGTTCCCGTTATCATCCCGCTCTCCACCAAGAAC 1124644 30 100.0 37 .............................. TGCAAAATTCCAAAAACTGGAAAAATGCATAATTCTT 1124577 30 100.0 37 .............................. TGAAGAACAGCAGGGCAAAAGGGAAAAGGGTGGAATA 1124510 30 100.0 37 .............................. TGTATATATAAGTGAAGGTCCCCTTTAAACCCCCGGG 1124443 30 100.0 37 .............................. GATTTTTGGTCCTGAAATTTCTCTCTCAAGTATACCC 1124376 30 100.0 37 .............................. GGAAAGTTTGGATAGAAGGCGAGCTGTTTTCTTCTGT 1124309 30 100.0 37 .............................. TCTACCACGCCTACGAAAAACAAAAAAAGATATTCAT 1124242 30 100.0 37 .............................. GGCGGTAAAGTAGATATCCCCTTCGTCAATGCCTATG 1124175 30 100.0 37 .............................. GCATATATCATCAAAAACGCTATGATCAATAAGGAGT 1124108 30 100.0 37 .............................. TGTTCCACATCTCTTTTGGTTGCCTCTCAAGGATTTG 1124041 30 100.0 40 .............................. AGGCTTGCAAAGTCTTTAAAATTACCTCTTCTGTGTGTAT 1123971 30 100.0 38 .............................. TCCCTGTAGGTATTCCAAACTCTTTGAAAATGTGAAGA 1123903 30 100.0 40 .............................. AGGCTTGCAAAGTCTTTAAAATTACCTCTTCTGTGTGTAT 1123833 30 100.0 38 .............................. TCCCTGTAGGTATTCCAAACTCTTTGAAAATGTGAAGA 1123765 30 100.0 38 .............................. CTGGGATTGCGCTGGATGCAAATGACAGTGTTGCAGGA 1123697 30 100.0 36 .............................. TGTATATCCCCCCCCTGCCTCAAAGAAAAGTGTATT 1123631 30 100.0 36 .............................. GAAAGTATTAGAACTTGATACTCAAAGCTTTGAACA 1123565 30 100.0 36 .............................. GCTGTTTGGTTGTACGAGCCTTTGTCTTCCGAGCAC 1123499 30 100.0 37 .............................. GCGATATCAGGAAAATAAGAAAGAACACGAGAAAGAA 1123432 30 100.0 36 .............................. TCGTCAAGGCTACCCAAGAAAAGCTAAACATACTCT 1123366 30 100.0 38 .............................. CTAAATGTGGCTCGCTGGAAAATCCTTGCAGCTCATGC 1123298 30 100.0 37 .............................. TCCAGTTCCCGTTATCATCCCGCTCTCCACCAAGAAC 1123231 30 100.0 37 .............................. TTAAATGTGGCTCGCTATTCATTTGGCGGCGCTTCAC 1123164 30 100.0 36 .............................. ACCTCAAAGGCGCTGACTGCCTTTCTTGGAAGGTGT 1123098 30 100.0 36 .............................. TGAACTTTGCCTCCTGTAGCTGCTCTACATATCTCA 1123032 30 100.0 37 .............................. TTATATCAACACTTACTCGCTTATGCCTATGTTAAAT 1122965 30 100.0 37 .............................. CGGAGACCCATATTTATACCCTGTTTTATTGGAGGCG 1122898 30 100.0 37 .............................. GGGCACCCACAACAAGGGAGAAAATAGCAGACATAAA 1122831 30 100.0 37 .............................. TTATATCAACACTTACTCGCTTATGCCTATGTTAAAT 1122764 30 100.0 37 .............................. CGGAGACCCATATTTATACCCTGTTTTATTGGAGGCG 1122697 30 100.0 37 .............................. GGGCACCCACAACAAGGGAGAAAATAGCAGACATAAA 1122630 30 100.0 36 .............................. GATGCGTGTAAAAAAGGCGTTTGGTCCACCGGGGAC 1122564 30 80.0 0 ......................TCCTT.T. | ========== ====== ====== ====== ============================== ======================================== ================== 34 30 99.4 37 GTTTATTAGGTGCCTATAAGGGATTGAAAC # Left flank : ATAGAGTGTTATAAGCTTTACAAGCATTTTATGGACGAGGAGATTTATAAACCTTTTGTAGGAGAATGGTAGATGTTTGTAATACTCGTTTACGATGTAAAGGAAGAACGAGTGGCGAAAGCACTAAAAATTTGCAGAAAGTATCTTACTTGGGTTCAAAACTCGGTATTTGAAGGCGAAATAACGGAAGCAAAGCTCAGGATGCTCAAAGACGAACTAAAAGGCATTATGGATGAAACCTACGACTCGGTGATAATCTACAAGTTCAGGACAAAGCAGTATTACGAAAGAGAAACCCTCGGGATAGAGAAGCCTTCCCACGAGGACTTTATAGTCTAAGCCTTCCAATACTTTGTCTATCCCCCGGAATTTTTGCAAGATTGGAGGTGGACAGAAAAATAACCCCACTTGACTAACTTGCCACTAGGGTTTATAATACACATGCAAGCTTACTACACCAAAAGCTTTTTGACAACTGAATATGGGTTTGTTCCTAACAA # Right flank : TCCTGATTGCTGATCCTCGCTTCCTCCTTTTTACCGAACATAGTATAAGCTACAATATATGTCAAGAATTAAGGATGAGTAAAAAGCAGTTAGGTGAATATACAAGGAGAAGCATAATCCTAACAGCAAAAAGACTCTTCGTAGAGAAAGGGTACTTCAACACAAGCATGAGAGACATAGCAAAAGAAGCTGGAGTCAGCACGGGAGCTTTATACCATCACTTTAAAAGTAAAGAGGAGATAGCAAGTGAGATATACAGAGAAACTGTAGAAAAGATAAAAGAAAGACTTGAAACAGCTCTCCGTAAAGGAAAAGGAACAAAAGAGAAGATAACAGGTATAATCAGGGAACTTCTTATACTTGCAGAAGAAGACAGGTACACAATGGAGTATGCTCTGTATGTTAAACATAGGGAAATTTTAGATGTTCCTGTTTGTTCCACAGAGCCGATGGAACTTCTCAAGAAATTTTGTAGAAAAGAGATAAATAAAGGAAGAATA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATTAGGTGCCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //