Array 1 248977-251138 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRL01000003.1 Klebsiella pneumoniae strain K2 KP-K2_NODE_3_length_431064_cov_31.4304_ID_581, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248977 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 249038 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 249099 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 249160 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 249222 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 249283 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 249344 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 249405 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 249466 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 249527 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 249588 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 249649 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 249710 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 249771 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 249832 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 249893 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 249954 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 250015 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 250076 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 250137 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 250198 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 250259 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 250320 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 250381 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 250442 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 250503 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 250564 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 250625 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 250686 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 250747 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 250808 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 250869 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 250930 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 250991 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 251052 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 251110 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 171725-172845 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHRL01000008.1 Klebsiella pneumoniae strain K2 KP-K2_NODE_8_length_240138_cov_29.3741_ID_2024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 171725 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 171786 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 171847 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 171908 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 171969 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 172030 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [172084] 172084 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 172145 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 172206 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 172267 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 172328 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 172389 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [172394] 172451 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [172456] 172513 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [172518] 172575 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 172636 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 172696 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 172757 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 172818 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //