Array 1 8054-6034 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHIZ01000016.1 Thermococcus sp. 101 C5 NODE_16_length_31976_cov_305.564, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 8053 30 100.0 39 .............................. TTCACTAAGGGTTTTTTCATGTTCTCTTTCATGATAGCG 7984 30 100.0 49 .............................. AATCATCGGCGTATGCATCATAATAAGCATGGCAATATTCTATTGTTTG 7905 30 100.0 38 .............................. AAGGTAGTTAAGCCGGCTACGAGAGTGGTCAAGAGGGC 7837 30 100.0 40 .............................. TTGCGTTCACGTCCTCCAGCGGCAAAGCCTCGGCGTCGTA 7767 30 100.0 43 .............................. ATATATGACTTTCGCAACGCACTATATAGCACTATATTCCCAC 7694 30 100.0 38 .............................. AGGAGATTTACAGGGGTCTCATTAAGCACCCGAAGACC 7626 30 100.0 40 .............................. CCGAACTAAGGAGCGAAGTATATCCGCTGTCCTGATAAGC 7556 30 100.0 41 .............................. ATTTTGGGATGCTTTTGAAAGACCAAGATAAGGAGGGTTCG 7485 30 100.0 39 .............................. GATACCGACCTTTGCGGAAGCTTTCCACCGCTATGTTGA 7416 30 100.0 37 .............................. CTTATTGTTCACTTTATACCAGTTAAGGGAGAGGGAG 7349 30 100.0 41 .............................. AAGAGAGCCTTAACCTTTTGATTAGGTTCAACACAAGCGTT 7278 30 100.0 38 .............................. CCCGGAAAAAATAGGGTTAAGAAGATAGGTTCTTTTGA 7210 30 100.0 37 .............................. AAAGCTCTTAGCTTTTCAATGTTCTTAGGGTCATAAG 7143 30 100.0 38 .............................. TCAAATTCTTTTTAGCTCTTTCAAGAACTGGATTTTCA 7075 30 100.0 39 .............................. TTGGTTCGGTGGGTAGTGTTAAGCCCTGTGTGGCCGCTT 7006 30 100.0 36 .............................. GATAAACAGTGAAATAGACGCAGTAAAGCGGGTTTT 6940 30 100.0 37 .............................. ATGAGCACATTTATTTTGAACATGAACATATTTGAGC 6873 30 100.0 37 .............................. CCACCGCGGATGTTATGCAAATTTTCGGGGAACGCGG 6806 30 100.0 37 .............................. TGGGCTTAACCACGTAAGCTTGAATATAATAAAGCCC 6739 30 100.0 37 .............................. AATATATTACGCACTTTAACCATATGGTCACCCCCTT 6672 30 100.0 37 .............................. CTTACAGAGGAGGAAAAGACAAGATACGCCCAAGAAA 6605 30 100.0 36 .............................. TCCTAACCTTTCTATGGATAAGTTAGCAGCACTCAT 6539 30 100.0 37 .............................. ATTTGTTTTATTGCGATATAATCCGCACTAACCAGGT 6472 30 100.0 36 .............................. CTAGCATAGCTATCCTTAAGCAAACTACTAAACAAC 6406 30 100.0 37 .............................. GAAAACGTCTTGGGGGGTGGCATTGCTCCAAAACCAC 6339 30 100.0 41 .............................. AAGGACTCGAAGCTGATGTCGTCTTTTTCCACCGTTCCAAT 6268 30 100.0 39 .............................. TGTATGTATTTGTTGCTGGTGGTAGTCTATCGAGTGAAA 6199 30 100.0 37 .............................. TGCGCTTCCTAGCCATACTGCATCACCCTCTCTTTTT 6132 30 100.0 39 .............................. TGTGCCAGTATCTCGAATTTCCAAAAATCTTGGTTAGGA 6063 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================================= ================== 30 30 100.0 39 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : GAAAACTCAAAATGCTTATCCAATAGTCTTGTATCATGTTTGGATTCTCTCTTTTTGGTTTTTCTGCTTTCTGAAGGATTAATTTTGAGTTTAAGGCTCTAGGAATGCTCTGGAAGTCTTTAGTAACTGAAGGTTACTATCTTACAAAGAGTTACAAGTTTTTGAGAGTTTTGTAACGAAATTTTTTCGAAGTTTTGAGTTGAGGCTTCTTAGGGCTTCTTTGGTATTCTCTCCTCGTGGAAATTTAACCATTTTTAGTTTAAGGCGGTTTTATTGGGTTATTTTTGATTTAAGCTCCTATTTTGCCCCTGGAAGTCTTATGAACAAAGTTGGGCATGGGGAAAAAGGAGGAGCTTTAAGTAGGCTAGAGCTTTAAAGTTTTTTCTGGAAGCTCGAATTTGAGCTTTTTGAGGGGAGTTTTATTGACCCCTTGAAGAAAAGCTTATAAGATTCAAGCCTTCTAATTACTCTTTGAGGAGTTTAGAGGAAAAATCGCCCCT # Right flank : CGCTTAGGCGAAATCTTAAAAACAATAAAAGCGAAATCAAAGAACTCTTTCCAGGATTTCCCTCAGGTCTTTCAAAAACTCCTCAAGGTGCTCCCTCTTTACGTGGGGCATCATAACTATCCTTATGTACCCCCTGTGGGCGCTTATTCCCCAGCCTCTGGCTTTGAGCTCGGCCTCAATTTTCTTAAGCTTCCTGGAGCCGAAGGAGACTATGTTCAACATGGGCTCCCTTATAAGGTATACCCCATTTAGACCCTTTATTTGCTCCGCGAACCAGTAAGCATTTTCCATAGCCTCCTTGACAACTCTCTTGTATCCTTCAAAGCCAAGATGCTTGAGGAGGGCCCATACTGCTATTGCATTTGCACCTGGCCTAGTGCCGGTAATGGTCGCCTGGAATATCTTTCCTCCAGCTAAATAAGGTGCTAAAACGTTTATGGCCTCTATGTACTTTTTCTTTCTAAAAACTATCCCCCCAGCAGGGATTGGGGCCATGCCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 15678-19088 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHIZ01000017.1 Thermococcus sp. 101 C5 NODE_17_length_31956_cov_282.15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================== ================== 15678 30 100.0 40 .............................. ATTCTCTTTGAATGATTCTGTAACTCATAGACTTAGGATT 15748 30 100.0 52 .............................. TCGGAGCTCACAATGGCGGCGATTCCTTGGTACGTCTTCCCGTTGTACTCGT 15830 30 100.0 38 .............................. TTGATTTCTCCCTCTTCTTCCTCTTTCATTAGCTCTTC 15898 30 100.0 41 .............................. AGTAGTGCGGCTACGTTCATTTCCTGCTCTTCAATTGGTGG 15969 30 100.0 38 .............................. CCCTCTCCCTCAATTGTTACCTTCAGAGTTTTAAACCC 16037 30 100.0 40 .............................. GCAAGTGCTTAGTGATACAATCTGAGCACCGAGCTTTTAG 16107 30 100.0 37 .............................. TAGAGCAACACTGCCAACCTTCTTTATGCCTCTCCAT 16174 30 100.0 37 .............................. TAAGGGTAAGATAAGGAAGTGTGTGGCTTGGAAGAGG 16241 30 100.0 38 .............................. AGGGTGAAAAGAGCAAGTAGGCGCTTGGCTTCTTCGTC 16309 30 100.0 37 .............................. GAGGCCTGTTCAACAGTAATGAACGAGTTGGTAATGT 16376 30 100.0 40 .............................. TCAGGTGTTTGGAACTTAGCTTCAAGTCTCATTTCAACAA 16446 30 100.0 38 .............................. GAAAGTATCTTCCCCAATGGACTTAGGATAATTTTCTT 16514 30 100.0 42 .............................. TCATGTAAGCTTCTCTTTTTGAATCCCACCTCATTTCCTCAG 16586 30 100.0 37 .............................. ACCTACTCAATCAACAACACAACAAAGACCAGATAAA 16653 30 100.0 49 .............................. AGTGTAGTCTGTGTTTGTTTGCGGGTCGTGGGCTAATTGAACCTCAATG 16732 30 100.0 42 .............................. ATGAAGGTAACGGCTGAATTAAAGCACAAAGCCTCAGGGGAG 16804 30 100.0 34 .............................. CCGTTACTATAATTTGAGCTGTTGAAATAAATAA 16868 30 100.0 38 .............................. TAGTTAGGGTAGAGAAGAGGAAGGATAACCATGAGAGG 16936 30 100.0 38 .............................. TCATTTCTTCTTTAGATAAATCACTTGTTGCAATAGTC 17004 30 100.0 38 .............................. GAAGTAGACTTTCCATGCGCTTGCTTTCACATCTACGT 17072 30 100.0 36 .............................. TACGATGAGGCCCGCCACGAAGCTTGTGACTGCTAG 17138 30 100.0 38 .............................. CGGTGATATGCTCTACGGGGGGAAAAAGTAATGTTAAA 17206 30 100.0 36 .............................. TTCGTATACAGTTGCTAACTTTATCTTATTAGGCGG 17272 30 100.0 35 .............................. TGTGTGGAAAAGGGCATAGGGAGGAGCCTAAACAT 17337 30 100.0 39 .............................. AACTTACGTGCATACGTCTTTGATTTCCGTTTAGCGTTC 17406 30 100.0 38 .............................. AAGCCTATTGCGACTATAAGGAGAGGCAAAATTAATCC 17474 30 100.0 37 .............................. TGAATGATTTGAGTCATTGTTCCTCCGCCGTCTTGTC 17541 30 100.0 37 .............................. TAAGCGAACTACTAAGAGAATTACTACGCAAGGAGGT 17608 30 100.0 38 .............................. AGTATTAGAACAAGCATAAGCTCATCTTTTTTCTCATT 17676 30 100.0 37 .............................. TGATATAAAGGATAATGTGACTAGTACTGTGCCTTTG 17743 30 100.0 40 .............................. TTCGACGACATGATCTTATACGCAATGGTGGTGGTAATAA 17813 30 100.0 40 .............................. CTAGCCCATCCAAAGGAGGATTGTCCGGGTCGTTGTAAAT 17883 30 100.0 40 .............................. TTCGTATACAGTTGCTAACTTTATCTTATTAGGCGGATGC 17953 30 100.0 41 .............................. AGTGATTTGGACAAGATGCTTAAGATGAATATAATAAGTGA 18024 30 100.0 38 .............................. ACTACCCTTAAAGATTTCAAAAGCTTTCATAACCTTAT 18092 30 100.0 39 .............................. AATGAGGCTGTCTTAGTTGTTGATGAAGCTTCAATAGGG 18161 30 100.0 39 .............................. AAGAAACACGCCGGAGTCGTCGCACTAATAGGTCTTTTG 18230 30 100.0 43 .............................. AAGTAAGTATAAACTATGAGCACTATGAATAATATCCCAGCTC 18303 30 100.0 37 .............................. TTTTCTACTCTTACGATCTTGCCCTTTGCTATCCCTT 18370 30 100.0 38 .............................. AACAACCAGGAACAGCACGAAGGCTGCCAACGGTGATA 18438 30 100.0 38 .............................. AAAAATGTGGGTATATTTTGGGAACGTTTTACAAGTTT 18506 30 100.0 40 .............................. AAATATTTAGCAAATAAATATTTCGTTAAAGCATCGTCTT 18576 30 100.0 38 .............................. AAAGGCTTGGTTATCATATAGCTCCCGATAAGATTAAG 18644 30 100.0 38 .............................. ACTCATAATGGCTGCAGTAAACACTTGCTCAGCTGCAA 18712 30 100.0 39 .............................. AACCGGGATTTTTAAGAACTTCTTTTTCTCTAAAAACCT 18781 30 96.7 38 .................A............ GGATAAAGCGGAGTGTACGTCGTGACGATGCCGAGCAG 18849 30 96.7 36 .................A............ AGGAGAATCAACGTGATGATAAACTACGCTTCAACG 18915 30 93.3 37 ..............C..A............ TCATCAAGAACAATACAAATAACACTCCAAAAAACAA 18982 30 96.7 42 .................A............ CTGTCTGCTCTAGATTATGCTATTATTGTGGAAACTTCAAAG 19054 30 83.3 0 .................A..A...CA...A | AAG,G,G [19062,19070,19075] ========== ====== ====== ====== ============================== ==================================================== ================== 50 30 99.3 39 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : GGCAGACTCTCTTTTATGTTTTTTGGAACCCTATCACGTTGAGAGAGCGTCATTTTTAATTTGTCCTTCTTGGAGAGAATTAAATGAAAAACTACCTTTTATAACGGCTTTGGAAGTCTTTAGTAACTAAAAGTTACTATCAGACAATGAGTTACAGGTTTTTGAGAGTTTTGTAACGAAATTTTTTCGAAATTTTGAAGAGAGCCGTCTGAGAGCTCTTTGAGTACTCTCTCCTCATGGAAATTTGACCTTTTAGTGTTTAGTAGCATTATAGTTCCTTAAATCTAATTTAGGCTTTTGTTTTTGTTCTGGAAGTCTCGTGAACAGGAATGAACATTAGAAATTCTGAAGGTTTTGGGGGGTTTGAGTAGTTTTATCTCTCCATTCCATGGTGGAATTGCAGACTTCTAGAGGCGTTGTTATTACCCCTTTATCGAAAGCCTTAAATATTTCGAGCCCTCTAATAGGCTTATAGGTGAATTCAAGCAAAAATCGCCCCT # Right flank : AATCCTTAGCACTATTCTCGGGCGACTCTGTTGATGAGCCTTAGTATGTAGCCATTCTCTTCAACAAGCGTTGCCCCTCTATTTCTCGGGACGCCAAGTTCAACTGCACCATTAATCCCGTGCTCCTTCAGAAAGTCATGAGCCTTTGCTTTTATAATCCCATACTCATCCCTCTTTATCAGTCCGTAGACCGTTGGCCCCCAGGAGCTCTGCCCATAGCCGTATGTGTTCTCACTCAGGAACTCCATGATGAGCTTAACGTCTTCCCTGAATTCCCCACCTTGGTACTCTTCAAAGTGCTTCCCAACAAGCTTTTGGATTTCGCTTAAGTGTTTTCCAAACTCTTCAATGTTTCTCTCTTTTAGGGCAGGCAGCAGTCCGAGAAGAATTCTGTAGGAGATTTTTTCCGCTATACTGCTTTCCCCTTTTACGCTCTGCATTATTGGTTTTTCTTCCTCCTCATCAAACCCCCTCTTTGTTTCCGGAATTATCAGGAGAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 10930-8911 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHIZ01000043.1 Thermococcus sp. 101 C5 NODE_43_length_17889_cov_351.647, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 10929 30 100.0 41 .............................. TATTCTGAGACCACGCTGTCGCTCCTGTCATCGGCGGTGTC 10858 30 100.0 38 .............................. TTGCCTTAGCTTCGGCAAGTCCAAAGGCTTCTTCAATC 10790 30 100.0 38 .............................. AAAGCTCTATGAAGTCTTAGAGACTAATAAGGCTTTGC 10722 30 100.0 38 .............................. CATAGTAAATTCGTACAATAGTTCTTTTTGGTCATCAA 10654 30 100.0 38 .............................. GAAGGTAATCAGTCACCCCAACAATAAACGGTGAAACA 10586 30 100.0 40 .............................. AGGGCTTGAATGGAGTTTCCTTTCCTTCGTAGCCCAACAT 10516 30 100.0 40 .............................. GAGTAACTGAGGTCGTTGAGGGCGTTACTGAGCTAACAGA 10446 30 100.0 38 .............................. GTTTCTACAAGGTCTAAAGTATATACGAACAGGTAGGT 10378 30 100.0 40 .............................. TCATCAAAAGTCCAATTTCCGGCTGTGTCTTGGATTTCTA 10308 30 100.0 37 .............................. CTGTTGTCGTTTGCCGTGTCATCTGGTCTCTTTGTTC 10241 30 100.0 40 .............................. CTATCCAACTCCCCAAGACAATCAAGACCGAACTCGACGA 10171 30 100.0 36 .............................. GAGGAAGAGCAACAAATTAGAGAAGAGGTAAAGAGG 10105 30 100.0 37 .............................. ATCACCCCTCGTAAATTATTTTCGCAAAAACCTTACC 10038 30 100.0 38 .............................. GTGCATCAGCTCCTACATACTTCAACATGTATCACCGT 9970 30 100.0 41 .............................. GGGGTGCGCATTTTCGAGTGCGTGAAGGTTTTCCATCCACG 9899 30 100.0 39 .............................. TGCTTGATTTACAAGATGCTATGTTAAGGGTGAGCTTTC 9830 30 100.0 37 .............................. ACGACCTTAACCAGCTTGCTTTTGCAGTTAAGAAGGG 9763 30 100.0 40 .............................. CTGTTACTTCGATTGCTATCGGTTGCCACTGTTCATTATA 9693 30 100.0 38 .............................. TCTTAATCACTTTCAAGTACTGCTTTATTTCAATCCAC 9625 30 100.0 41 .............................. AAAGAAGACCACCAAAGAAAGGATATCACAGATATCCTAAG 9554 30 100.0 39 .............................. GGAAAAGTCGCTGTCATCAGTTTTGATAGAAAATCAACC 9485 30 100.0 37 .............................. CAGGAGCGTCTTTATAATCCGCTGGCAAGCTTCCCGC 9418 30 100.0 40 .............................. AAGAAGAGTGTCGACTTGATTATTGCAGACCCTCCTTATT 9348 30 100.0 40 .............................. TCGTTCCCGTTCCCGCTCTTATCAAGCCACTTGTTATTGA 9278 30 100.0 39 .............................. CACTCCACTTTCCGGCTACGAACTTGGCACCTTGTTGTG 9209 30 96.7 37 .................G............ ATTAAATTGCTTAAGAATCTTTGCCGGGATTGCACGG 9142 30 100.0 38 .............................. GTTGTTTCGTCCTTGTAGTAGATTACAGTTCTGTAACC 9074 30 100.0 37 .............................. AATTGATCCCAGCCTATCCCCATTTTTGCTATCTCTT 9007 30 100.0 37 .............................. CTGCTTCAAACGTAATTTCACGAGTTGAGAAGTGCTC 8940 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 30 30 99.9 39 GTTCCAATAAGACTTTAAAAGAATTGAAAG # Left flank : TACAAGTCAGAATAATTGCAAAATAGCACGTTATCATGTTTAAATTTTCTCTTTTTGGATTTTCTGCCCTCTGAAGGATTAATTTTGAGTTCAAGGCTCTAAGAATGCTCTGGAAGTCTTTAGTAACTGAAGGTTACTATTAAACAAAAGGTTACAAAAATTTTAAAAGTTTATAACGAAATTTTTTCGAAGTTTTGAGTTGGGGCTTCTTAGGGCTTCTTTGATATTCTCTCCTCATGGGAATTTAACCATTTTTAGTTTAAGGCGTTTTTGTGAGCTTATTTTTGATTTAAGCTCCTATTTCGCCTCTGGAAGTCTCATGAACATTCTTGAGCATTGACAAAAAGGAGGAGTTTCAAGTGTGGTTGAGTTTCAAGGTTTCTCTCAAGGGCTCGAATTCGAGCTTTCTGAGGGGAGTTTTATTGACCCTTTGAAGAAAAGTTTATAAGATTCGGGCCTTCTAATTACTCTTTGAGGAGTTTAGAGGAAAAATCGCCCCT # Right flank : AAAAAGAGTTGGACAGTTATGAACAACACTTTTAAACCTCACCAGCTACTCTATTTTGATGATAGCGTTAGGAATTGAGGGGACTGCACACACACTTGGCATAGGGATTGTGACGGAAGATAAGGTTCTCGCCAACGTATTTGATACTCTAACAACCGAAAAAGGTGGCATACACCCAAAGGAAGCCGCTGAACACCACGCAAGGCTCTTAAAGCCCCTTTTGAAAAAAGCCCTTAGAGAGGCTAAAATCAACATTGAAGATGTTGACGTAATTGCTTTTTCTCAAGGGCCAGGACTGGGGCCGGCTTTGAGGGTTGTGGCAACAGCCGCGAGGGCTTTGGCTATAAAATACAACAAACCCATTGTCGGGGTCAACCACTGCATCGCCCACGTGGAAATTACGAAGATGTTTGGAATAAAAGACCCGGTTGGCCTCTACGTAAGCGGGGGCAATACTCAGGTTCTTGCATTAGAAGGCGGTAGGTACAGAGTATTTGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 1 9757-5610 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHIZ01000041.1 Thermococcus sp. 101 C5 NODE_41_length_18020_cov_331.805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================== ================== 9756 30 100.0 38 .............................. TGTTCTTATCGCCGTAGCGTTTACTTTGGAGTCTTGAA 9688 30 100.0 36 .............................. TTATTGTACTAGTTCAAGAAGACCAGGTAAGGAGAT 9622 30 100.0 45 .............................. AAGCTATGAGGCGTCTTGTTTTCCTTGAAACTACAGTTATTCCAA 9547 30 100.0 63 .............................. ATATTGGCTTCCCACTGGGGTGGATAATGGGTTTAAAAGCGTTTTCAAAAAACTTTTCCGCCG 9454 30 100.0 42 .............................. AATATGAGTTTGGAAAGACGTCCTTAAATGGCTCTAAATTGG 9382 30 100.0 38 .............................. AGTTTAAGAAATGTGTAAACATGTGGAAGCGTGGCCAG 9314 30 100.0 38 .............................. TCTCGACCTCAAGCTCCCAGTCCAGCCAGCCAAACTTA 9246 30 100.0 38 .............................. TGCCTTAACGTGCTGTCTGTCCTCTGGTACAAGAAAGG 9178 30 100.0 39 .............................. TAGATTTGCCACGTAACGGAGTTATTGAGAGAATAGCAC 9109 30 100.0 36 .............................. GAATATCCCGAGCGGTATTCTTCAGCTCTTGAACCT 9043 30 100.0 37 .............................. ATTGTTGTTAAGCCTCTCAGTATCCCGATTAAGATTT 8976 30 100.0 45 .............................. TTCGAAAGGACCTCCTTGAACAATGTATTAAAATGTGCATTGGAG 8901 30 100.0 47 .............................. ATCACAAGTGAAGCAATAGCTAGGAACGCAACAAGCCCCCTAGTCCA 8824 30 100.0 37 .............................. TCAATAGCAATGAGGCTCCAGAAGCTAAATATAGTCG 8757 30 100.0 39 .............................. AACTACTGGTTTTACTTTAATCGCATCTCCACCGCTTAG 8688 30 100.0 38 .............................. CTCGGTAGGGGGCTTTTTCGAGTATCTTAAGTGGATTG 8620 30 100.0 41 .............................. CAGACGTTTTAGACACTCCACTCCCAGACGGCTCAAAATAC 8549 30 100.0 41 .............................. GAGATAGGGAAAGAAGTAACACTAAAGTACGACAAGATCAA 8478 30 100.0 39 .............................. TCTGCAGTTGGCTTTAATGCCAACTTGAAAACTCCCATC 8409 30 100.0 36 .............................. GACTTTCTCAAATAAACCTCATACCTAGCCAACCTG 8343 30 100.0 38 .............................. TTCATAAAAGTCAAGTATCGCAATCACTTCCTTGACAG 8275 30 100.0 37 .............................. AAGCACCAATACGTGAATGTAACAATACTCAGCTACA 8208 30 100.0 35 .............................. AGTGTTATAGCGAGGAAGTATACAGACGTCTTTGT 8143 30 100.0 39 .............................. ATAGTGCTTTCCCCACTTGCGCCTCTTCACCACTATCAT 8074 30 100.0 39 .............................. AGCCCTAAGCTCATTATCAAAGTCCTCCCTACTCCTCAG 8005 30 100.0 36 .............................. TAGTCATCTTCCTCACCTCTTTAGCAGCTCTTTCAG 7939 30 100.0 42 .............................. ACAAGTGTTGTAAAGCCAACCTCAAATACAAACGCTGTAACT 7867 30 100.0 38 .............................. GAAACTTCATGCTGATAGTGCCCCCTACTGCAATAAGT 7799 30 100.0 37 .............................. TACATTGACGTAGGTTCAGAGACCCATGGTAGACCAT 7732 30 100.0 38 .............................. ATCACGGCGTAAAACTAGTCAAGCTGGACTGGTCAATT 7664 30 100.0 38 .............................. CCTAAAGCTTCTTTAATCTCCTTCGCCGCTTTGCTGAA 7596 30 100.0 38 .............................. GTTCATAAATACTACTATCCTTTCGTCGCTCTCTCCAC 7528 30 100.0 36 .............................. TATTTTTTTGCTGGTTCTGATAAGGACGCTTTTGCT 7462 30 100.0 38 .............................. TAAGTGATGAGGAAATCCAAGCAATCTACAACGACCCA 7394 30 100.0 38 .............................. GAAACGCCAAGATAATTATTACCACCACCATTGCGTAT 7326 30 100.0 36 .............................. CTACGTGCACCTTAGCGCCGTTTATTTCATTGATAT 7260 30 100.0 37 .............................. GCACATCTTTAAGCTTCTCGAACTTGCTGTTTCCTGC 7193 30 100.0 38 .............................. TCACTTACAGGAGTGTAAACATCCCCGTTAATAATTAG 7125 30 100.0 38 .............................. GCAACAAGTGTTCAAAAAGAAGATGTAACAATTACCTA 7057 30 100.0 36 .............................. AAGATTTCGGCTAGTAAAAACTCGGCTGTGGGTATA 6991 30 100.0 38 .............................. CTCGATGACACAACATTTAAAACGGCCCAAGTCTTTTG 6923 30 100.0 37 .............................. GTTACGTCCTTGAGAAACTCCACTGCTCCCCTGTCAA 6856 30 100.0 36 .............................. AACATTTTTTCCTACCTCCTGCCCCGGTGCGGGGCA 6790 30 100.0 38 .............................. AAAGCTGGACAGAGCAGCTGAAAAATATCACAAAGCGA 6722 30 100.0 38 .............................. TGTCTTAATGTCCCCCTCTGCCAAATTACTTAAATCTG 6654 30 100.0 38 .............................. CTTAACGTCTTGTTTAAGGGAATATGGACGATATTGCT 6586 30 100.0 38 .............................. CCCTTCTCCGGGCTCAAGGTAGAAATAAACCACATACT 6518 30 100.0 38 .............................. TAACAGTGGAGAACATCATAATTGAACACAGCGGCATA 6450 30 100.0 41 .............................. AGGAGGGAGGAGGAAATGGCGTTTACTATAAGCGACATGTT 6379 30 100.0 36 .............................. TTCCTTATACGCTGTCTCCAAAACCACCGGTATTGC 6313 30 100.0 37 .............................. AAACAGAGATTTTAACGTTGTATAGAGAACGTTTTAT 6246 30 100.0 33 .............................. TTTGAAATTAAACGATTTCACAAAACAAGAATA 6183 30 100.0 37 .............................. CAATAGCAGGGACTTTCTCACTCAAGCGGGAAAATTC 6116 30 100.0 40 .............................. CAAAATCTTCCGCAACTGCCGGCCGGTTGGCGCGGTGGTG 6046 30 100.0 38 .............................. TCCTGAGGTCTATAATTGCCCAAAGCCCAAGTTTTCTT 5978 30 100.0 38 .............................. TTCCGTGGTGGTGAACCAGTCTTTAAAGATGTAATAGA 5910 30 96.7 41 ....T......................... ACAGGCAACTTATACAGGGCTTTCAGCACTGTATGGTGCGT 5839 30 100.0 35 .............................. AGCTCAATTGAGATTTATGAAAACACTATTTATGA 5774 30 100.0 37 .............................. TTTCAAAAGTTATGAATATCGCTTTTGAGGGAGCGTA 5707 30 100.0 38 .............................. TTCCTTGATGTTTTGGATTTGGTTGTCGATGTCTTCTT 5639 30 90.0 0 .................A....G......T | ========== ====== ====== ====== ============================== =============================================================== ================== 61 30 99.8 39 GTTCCAATAAGACTTTAGAAGAATTGAAAG # Left flank : ACTACGTGAGTGAATAGCCGAAGATTCTTTGTATCACGTTTAGCTTTTCCTTTTTTGGGTTTTCTTTCTTCTGGTGGGCCAGTTTTGATGTTAAGGCTCTAAGGTTGCTCTGGAAGTCTTTAGTAACTAAAAGTTACTATCAGACAAAGAGTTACAAAATTTTGAGGTTTTTGTAACGAAATTTTTTCGGAATTTTGAACAGGGTCTTTTTAGGGCTTCTCTGATATCCTCTCCTCGTGGAAATTTAACCTTTTTGGATTTAATGCTTTTTTATGGACTTGTTTTTGGTTTAGGCTTTTGTTTTGTCTCTGGAAGTCTCGTGAACATTTTTGTGCATGAAAGAAAAGTGGTAAGTTCAGGCGAGTGAGTGCTTTAAAGTCTTTTCTAGTGGCTTGGATTTGAGCCTTCTTATGGCTGTTTTATTGACCCTTTGTGGAAAAGCTTATAAATTTCAAGCTCTCTAATTACTTTGTAGGGGATTTAAAGGAAAATTCATCCCT # Right flank : GCTGAAATGTAAGGCACCTTAACCCAAACCACGGCCTGTTCCAAAAAGACTCCTGACATCCTCTACCTTCTCACCAGTTATGAAATATGAATGACGAAGTGATATTCTCCCCTTACCTGAACCCCCGACATCTCGAAAACGCTGGGTTTTTAAACTCTCACCCTTCTACTTTACCATATATCAAAGGGGAGGGTGAGAGAATGGACAAAGTTTATCTCACATGGTGGCAGGTTGATAGGGCAATCTTCTCACTTGCTGACAGCTTAAGAGAATACAAACCCGACGTCATCGTTGGAATCTCAAGGGGAGGCCTTATTCCAGCAGTAAGGCTTAGCCACATCCTCGGAGATGTGGAGTTCAAGGTAATCGACGTAAAGTTCTACAAGGACATAGGAGAGAGAGGAGAAAAGCCTGTGATAACAATCCCCCTCCATGGAGACCTCGAAGGAAAGAAGGTTGTAATAGTAGACGACGTCAGCGATACCGGAAAGACTCTCCAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTTTAGAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //