Array 1 61079-61306 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017691.1 Geobacillus thermodenitrificans strain ID-1 plasmid pLDW-2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 61079 30 100.0 37 .............................. ATGCTTTCAGCAACCCAATGGCTGTTTGTGCCGTAGC 61146 30 100.0 35 .............................. TCAGTTGCTTCGTCTACAATTCCTCCTGTTTCTGT 61211 30 100.0 37 .............................. CATTCAGGACAATCTAATTCAAAAGCGATGCGGTCAA 61278 29 73.3 0 ...................-...GCAGCTT | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 93.3 37 GTTTTTATCTTACCTATGAGGAATTGAAAC # Left flank : TGAAAATAAAGGGTTCATGAACGGTTATTTTCATGCTTGGGTGGCGAGAAAAACTTCCTCATGGGTGTTTTTTGTCATGATTTGTCGAAATATGTATTTTATATTTTTGTCAGACAGTAAATGTTTTAATATTTCTCATAATATGGGCTGGTAAAAATAAAAAAATAGGCACTTTGCTAAAAAATGACCGCTCAAATTCGCCTGTATCGCGTTTTAATCGATAAGGTAATGGTTTTTTCTATTCAAGAAAGAAAAAATGTTTGTACGGACCGTTTTTCGAGTTTAACGCGGTTTTCATGTTTTTATGAAAAACAACTGCTTCAACCCTTTCTGTCGTCGACTTCCAATCGTGCAAAAACTCCGGGGGATCGACGACAGTTTCTTTTTTTCTTTCCTTCCTACAGCCATCAGCGATTCACTCTATTGACGGAATTTTCGAAATGGAGTATACTGGACTTGACCTATTTTGAAAAGTGTTGATGTATCAACGCTTTTTGGGG # Right flank : TAGTTTCCCCGCTCCTGAGAAAAAGTTTGACCGAATCCCCTCTGTTTTCCACGTTGACAGGGATAAACGCCTGGCCGGCATAGGCGAACCGCTTTACCTCTTTCCAGTCCAACTTTTTCCATCCCCCTCTTCCCCTTAACGCTCGGGGTGAAATTTGTCGAAAATATCACATTTTTAAGTACAATATACCCCTATTTGGCAAAAAAATCAAAATGACAAAACCTTATCTTTCAGCTCGAAAACAGCGACTTTTGTTCTGAAAAACGCCGATTCGATTAATTTGTGCTTTGAAAGGCAAAATTGGCACTGGTATCTTAATTTTATGTCAGACGAAAAATGTTGAATTAGTGAAAGTCTGGAGGTATAATAAACACAAATAGTGTCGGACAAAAAATAGAGGTGATGGCGATGATGGAAGGAAGATGCTATGAGCGGCACGATTTTCAGGTTCTCGTCCTTCAGGAATTCGGCAAGCGGCGCCCTCGGTCCCCAGAGGAAAC # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 42610-43634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017690.1 Geobacillus thermodenitrificans strain ID-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 42610 30 100.0 37 .............................. ATGCTCTCTCTAAAATAGCTATTTGCCTGGACATTGA 42677 30 100.0 39 .............................. ACAAACACCCCCTTGCACGTTTTGTACACATTTTTCCGC 42746 30 100.0 37 .............................. GCGGGTAAATGTGTACATTTTGTACATGTGGAGGTAG 42813 30 100.0 38 .............................. GGTATGACGATCTCGGCGCTTGGTTCGTATGTGATCGG 42881 30 100.0 34 .............................. CCAATAAAAACTGACATGAAAACTGACATAAAAA 42945 30 100.0 35 .............................. GTAACTATTAGAAATGCTATAGCATCAATAAAACC 43010 30 100.0 38 .............................. TATAGCCGCAGATAAAATGGCAGTTGGGACAGCCACAG 43078 30 100.0 36 .............................. CCATCGGCAATGCATTGGCACCCGCGATTGAAAAAG 43144 30 100.0 37 .............................. AAGGAGCGAGCAGACGCGAGCGACGGAAGGGGGAGCG 43211 30 100.0 35 .............................. ATAACATCCGCGTCCACCGCATGGCCAACAGCGAG 43276 30 100.0 36 .............................. CGCTCAACGGTACAGTGTTGACTATCGGTGATTTGT 43342 30 100.0 35 .............................. AAGATTCATCTGCTGTACCAACCAACAAAACAAAA 43407 30 100.0 37 .............................. GATCGCCTGTAATACGATACTGGAACGTTACACCTGC 43474 30 100.0 37 .............................. TCAGCAAATCCTAGCGGCGTTAGATCCAGAAGCGACC 43541 30 100.0 34 .............................. TTTGACGAGCATCCTGAAGTGGCCTGAGGGTTGA 43605 30 73.3 0 A................A...AG..C.CTT | ========== ====== ====== ====== ============================== ======================================= ================== 16 30 98.3 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTCCGATGACATCGTCCGCGTCGCCCGTTCACCAATCCGCAAGCTCGGGCCGAACGATCGGCTTGTCGCACCGGCTGTGCAATATTACACTTTATTCGAACGTGTGCCGTCCGGACTTGTCAAAGGCATTGCTGCGCTGCTGTTGTTTGATGAGACCGGCGATGCCGAAGCAACTGCTCTCCAGAAAACGATCGAACAGAGCGGTGTCGAAGGGGCGCTCGTCCAATATGCCGGGCTTGACAATAGCCATCCGCTCGTCGTGGCGGTGAAGGAAGAATATGCTCAAATGAAGCAAATGTATTCGCGTTAAACTCAGATATCCTCTCATATTCTGTCGTCGACCTCCAATCGTGTAAAAATCCCCGGGGGTCGACGACAAGAATTTTTTATACTGAAATCCTACAACCATCAAGCATTGGTATTATTGACATAATTTTCGGAACGTGATATCTTGAATGTAGCCTTGGAAGAAAAAGCCCAATATAATAAGAATTTTTGGG # Right flank : TTCTTTCGTTAGCTTTGGAAGCCAGTACGGCTAGGACATTTCCATCAAGGCGGCTGGGACGGTACGAGATGAAAGGCTGCTTGCGTCGTGGAACTGAGGAATTCTTGCTTTAAGTAAAGGGAAAAGGGAGTTGTTCCCCGATTATTTCCTTAAGAATTCATACCTCATCTTATCTTCGTTTTTTATATTGATGAAAAAAATATTGTAAACCGCTTTCACTTGTTTTATAATAAAGCTAAACCGGTTTATGAAAGCGCTTTTGAACTAAATCGATTTAGTACAAGAGAGGGATTCTGTTGAAAAAAGTAACGATGGCTGATGTCGCGAAACTGGCCAACGTTTCCAAAAGCACGGTCTCGCAATATTTGAATAAACGCTATGAATATATGAGTGAAGAAACAAGAAAGCGCATTGCCCAGGCGATCGAAGAACTCGGCTACCAGCCGAACGTGATCGCCCGCAGTTTGAAGCAAAAGACAACAGCGACGATCGGCGTCATT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1717581-1716103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017690.1 Geobacillus thermodenitrificans strain ID-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1717580 30 100.0 38 .............................. TTCCGTTTGACGTGTCGCCATTCGAAAAGTATGAGCGC 1717512 30 100.0 37 .............................. CGAAACATAGCGAAGGAAGCAAGCGGTATTCGCGGAC 1717445 30 100.0 36 .............................. CTACATGGTCCGGTAGGGATGTGTGGACATACATCG 1717379 30 100.0 35 .............................. TTCTACTGGGCAAATGAGTTCGAGAATGTCAGCAT 1717314 30 100.0 35 .............................. TAAAGTTCTAACGCTTCCTCATAGTCCATATCTTC 1717249 30 100.0 38 .............................. AAGTTTGGAAAGAAGGGAAAAGAAAGGTTTATTTTATC 1717181 30 100.0 35 .............................. GCGGCTACTAATGCGAACGATGCCGCCAACAATGC 1717116 30 100.0 35 .............................. AGCTTTCAAATCTCGATGTTTTCAACAATAAACCG 1717051 30 100.0 36 .............................. TAGACAACCGATTTCACACCGAAAATACGCTCTAAA 1716985 30 100.0 35 .............................. TTTCCTCATCGAAAAACACTCGCTTCAACCAATGC 1716920 30 100.0 35 .............................. GTCGTATTTCCCCTTGCACTGTATCCCGCTTTTCG 1716855 30 100.0 38 .............................. AAGAGCTACAAGAAGTGTGCGAAGCGGCTTTGACATTT 1716787 30 100.0 36 .............................. CCTTTTGATTTTGCGATATTTAACGGCGATACCCTT 1716721 30 100.0 34 .............................. TATCCGCGTCAATCGTAAAGACGTTTTGCAATTG 1716657 30 100.0 34 .............................. GTCACAGGGATAATGAACGCGAAGCGCAAAGAGC 1716593 30 100.0 36 .............................. GAAACATAAGGGGACATGACTCCTATATTGGATTGG 1716527 30 100.0 37 .............................. TGAATCATGAAATACGCATTCGCCGGGATAATCACTC 1716460 30 100.0 36 .............................. CATAGTCCACTACATTTCCAAAAGTAGTGCGAACAT 1716394 30 100.0 35 .............................. TATTCAGCGAGCGAACTCGTCGGGAAGGATGACGC 1716329 30 100.0 36 .............................. CTTCTTACTATGCGATTAAAAAGGAGAGAGAGGAGT 1716263 30 100.0 35 .............................. AAATCCGCGTCTATGATGAACCAATGCCGGAACGA 1716198 30 100.0 36 .............................. AACGACATGCCAAGCCCGGAAGCAACCGCCGACACC 1716132 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 100.0 36 GTTTTTATCGTACCTATAAGGGATTGAAAC # Left flank : GAACCAACAACGGGGCTTGACGAGGCGAGGCAGCGGCGGTTGTTCGGACTGTTCGAGACGTATTTGTGATTATTTGAGGAAGAGGAGCGCCAATTACGAAACGAGGTGAACCAATGGAGACAAAGGAAGCGAAACAAGGAATGGAGTGAATCACCTCGTACGAGCAGCAAGGAATCGAGAAAGGAAAGGTGGACACCGCGAAACGGATGGTGGCGAAATGATGCGACGTGACGGCGATGGGTGAGCTGCTCGGATTGCTGATGGAAGTAGTGGAAAACAGCAAAAGGAAAAGGCTCATGTGAGGGCTCGAGAAAGCAAGAAGCGAACTTCGTTTGTCGTCGACCTCCAATCGTGCAAAAATCCCAGGGGGTCGACGACACTTATTTTTGTTGCTGATTCCCTACAGCCATCATGGACGAACATGATTGACGGAATTTTTCGACCGTGTTATTCTGAAGGTAACATGGGATGAAAAAGCTTGATATAACAGCACTTTTTGG # Right flank : GATACTGTAAGAGTATACAGTTTATCGCCATGCATTGATTGACGAAGTGGTGGCGGAAATCCATCGGTTAAACGAAGAAAACTTCCGCGTACGCCAACATATCCAATATGTACACAAGTTCCAAAACCGGAAAGCATGGAGCTGTTTAACGGCGATGGATGTCAATGAAATCAAAGAACATCTTGCACCGCTCATTGTTCCGCTCAACGATGATGAACTGGCCAAGCGCTTTGATTTGCTGATGTATACAGTTGAGTTGGCGAAGTTGCAAACAAAAAATGCGACGAAGCCAATTCGGAGCATGATTCGCACCACAGAAGCGTTATCTAAGCTCGGATCGATTCCGCAAGTGCAGGAACAAAAATGCATCATCGAAAAGGTGTAGACGGAAGAGTTTTGGAGCGAAGCCGATAGTTTTGAATTGGAAGCTGTTCGCGAAGCGTTGCGCGATTTAGTGAAATTCCTTGAAAAAGAAACACAAAAATTTTACTATACGAACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1753431-1753599 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017690.1 Geobacillus thermodenitrificans strain ID-1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1753431 36 100.0 30 .................................... AGAGTTCTTGCGCTGCAAGCGTGACTTAGA 1753497 36 100.0 31 .................................... TAACTCAGGTGACGGTGATTCTTTTTGTTTT 1753564 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 31 ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Left flank : AAGTTTCGTCACTGCAAGCCGAAGCCAAGATCCTTCGCTTTTGAAATTGCCGGAACTTCTTCCGTTGCAATTGCATGTTTATGAGTAAATTTATGAGATTGCTCGTCTTTTTTGACCTACCCGTTGTGACCAAACGGGAGAAGCGCGAATACCGGCGATTTCGTACATTCCTACTAAGCGAAGGATATGATATGTTGCAATTTTCGGTTTACAGCCGTGTTTGCCATGGACATGAAGCAACAGACAAACATTTGGCGAGATTGAAGCAGAATCTACCACCTCAAGGATCCATAAGGGCAATGGTCGTAACGGAAAAGCAATATGCAAAAATGCAACTGCTTCTCGGGGAACCAACAGTGCAAGAAAAGAAACTCACATCCACACAACTGACGCTTTTTTAAAAAAACAACAACAGTTCCCCTTTTTCAAGCAACACCGTTTCGTTTTTTTAAAACAAAAAAGCCTGCGATCCTTGAGATTGCAGGCTTTTTTGGACATGT # Right flank : CTGATGTGCATACTTTTCCTCCAGGTACTTGTAAGTTTCTACATAGTTGATTAAAGTGATTTTTTACGTAATATATATCTTATTTCGCCCCTCATAGGTACGATAAAAACGGAATATAGCGTTTACGCTCTTCCGTTTCAAAATAGTTTCAATCCCTCATAGGTACGATACAAACCCCAAAAAGTGCTGTTATATCAAGCTTTTTCATCCCATGTTACCTTCAGAATAACACGGTCAAAAAATTCTGTCAATCACACTCACCCGTGATAGCTGTAGGAGCCAAGTGACAAAAACAAATGTCGTCGACCCCCTGGGGTTTTTGCACGATTGGAGGTCGACGACAATAGAGGAATCGAATTATTTACCCGTTAGGCAGAACATGCCGAACCCTTGGGAATTTCGGCTGCCCAGGCCAACGTGGTATAAAAACGTCAACTGCTCGGGAGAAGAGGAGAGACGGTAATGCCCCAACCACCCTGTAATATACATATCTTTGAATA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCACAGCGATAATCTCAGGGGAACTATGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //