Array 1 245038-245905 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134523.1 Peptoniphilus ivorii strain NCTC13079 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 245038 36 100.0 40 .................................... AAAATTTTCTTTTTTCATTTTTATATCTCCTTTTCTGATC 245114 36 100.0 41 .................................... TGTCCTCGACCTCCACCTCGACCCCCTTGCCATATTTGAGG 245191 36 100.0 41 .................................... CTCAACGATTTTAAGGTCAAGCATGCCACACAAACGTACAA 245268 36 100.0 42 .................................... TCGGAAAGTTCTTCGTAGGTTCTCGGTTTAATTACTTCAATG 245346 36 100.0 40 .................................... ACAAAGCGGGCATACCCGATGCGGATCGGGCTGCTAAAGA 245422 36 100.0 38 .................................... TTGATTTGCAAATGATCAGTCAACAAGTCCGCCAAATC 245496 36 100.0 39 .................................... TTAATGCGCGGCTTTTGTAGTCCAATTTTGTGTTTTTGT 245571 36 97.2 38 ..................................G. TCTTCTTCTCCTCCATTGATTAGTACGAGTTCGTAGTT 245645 36 100.0 41 .................................... TCTCGACATGACAGTTCTTCTACCAATTCTCGCGTAGAATA 245722 36 100.0 38 .................................... ATACCATCGATTTATCCTTTCTTCGTCGACATCGTAGT 245796 36 100.0 38 .................................... AGGCTTTCGCAAAAACCTTCATATTCTCATTTTTAATT 245870 35 83.3 0 C.......-...C..................T..GG | T [245872] ========== ====== ====== ====== ==================================== ========================================== ================== 12 36 98.4 40 GTAGAACCAAAAAAAGCCCCTAACGGGGACGGAAAC # Left flank : AAACAAAAGTTTTGCGAACCTATAGAAAAGCTACTGCATGGACAATTTTCGGGATTTGCAGGTGAATTGCGCGCCTGGCAAATCAATGCGTTACTCAAAAAACTGCCGAAGATACCTTCTGAAATCACAAAAAGACTGGTAGATCTTCGTAGTGTCGAAGAAAGACGCAATCGGTTTGCCCATCAGATCATTAAAATTTCGAAAGAAGATTTAGAAGGAAGAATGAAACAGCTGGACTTTATTGTCAACGACGCCTGGTACTTGGTCAACGAACTCTGCGAATTTAGCTCTACCAGTGAGCAAATCTTCAAAAATGCCTACGATGAAGTGAACAAAAAAATCAAAGCAAGCTTATAATCTTGCGAAGTGCTATACTATAAGAGGAGGAGCAATGTGAGCTGCGGGAACCTTTAAATTTAAGGGCAATTTTTTACAAAATCGGCCTGCCTCCCGCAAATCGCATCTAAGCCCCTCTTGCCGACGGGCGTACAGCGCCCGGG # Right flank : GCGTACAAGCCAATGGTTTCTTGCAAAAGTCTATGTTCCGCCAACGATGAGAATTCTCTAAAAAAAACAGCCACAGCGATTTCGCTGTGGCTGTTGCTATATGGAAGATTTCTTACCGTAGCCCTTCGATATAGCCGAATAGTTTTTCCAATGTCGATGCCAGTTCGCCGCGGGATACGGGGCGTTCGGCGTCAAAGGTTTTGCCTTCCAATATGCCCATATTTTCCAAGGCGCGCGCCGCATCGGCATACCAATGGCGGAATTCCGTTTTGTCTGTGAATGCAGACGGGGTGGCGCTATCCATGGGAAGGCCCGCGTTTTTAAGGAAACGGTAGAGGATGGCGGTCAGCTCGGCCCGGGTCATTACGCGGTCGCCGCCGAAGCTGCCGTCTTCGTAGCCCTTGGCAATGCCTTTGGCCTTTGCCCAGGTGGCGGCCTCTTCGTACCAGCGGCTTTTGCGTCGGCGAAGGGGACTGCTTTCGCATGGGTCTTGTCCTTGC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACCAAAAAAAGCCCCTAACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [16,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 1533063-1529928 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134523.1 Peptoniphilus ivorii strain NCTC13079 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1533062 33 100.0 35 ................................. CCGATCCTGCGGCTGTGATAAAAACCCCGATAAAG 1532994 33 100.0 35 ................................. CCCGAGGTCTTGCCCGTCATAATTTTTGATGACGA 1532926 33 100.0 33 ................................. GCCGTCGGCTACCTTTTGCACATTATTGAGCCC 1532860 33 100.0 35 ................................. TATATCTTTATAAATAGTCATTTTATACCTCCCGC 1532792 33 100.0 35 ................................. GGAAAAACGTTACCGTAGTTAAATACCCCCACCTA 1532724 33 100.0 36 ................................. CACTCGGGAGCATGCCCGCGGTGTCCCATTCGTCTC 1532655 33 100.0 33 ................................. ATTTTTTTTGAGATATTTTTACCGCCGATCCGC 1532589 33 100.0 35 ................................. GGCGTAAGCCGGGAGATGGTAAAGACAAGATTAGA 1532521 33 100.0 34 ................................. TTGTCCTCGTCATTACCGCCGAAAAAGGCGCCAC 1532454 33 100.0 34 ................................. GGCGGTCGCGTGGTAATTACCGGGGGAGATGATT 1532387 33 100.0 36 ................................. CCATCATTATGGACATGGATAGTACAATAACTTCTA 1532318 33 100.0 35 ................................. GTATCCCCCTTTTAAGCCTCTGAGTACGCTCGACG 1532250 33 100.0 34 ................................. CATTACTATGCGGCGCCGAACGCCGAGAAGGAAG 1532183 33 100.0 34 ................................. AATTCCCAAAGGCTCTAGCGGAATCGTGTAATCG 1532116 33 100.0 35 ................................. TTGCTTTTACGCAAGATCTTGATTAAAAAAAATGG 1532048 33 100.0 34 ................................. GACATCTGTGACACTATAGCTGATCGTAAAAGGC 1531981 33 100.0 35 ................................. GCCTCACGTAGAAGCGCAATATACCGGTTCACCTT 1531913 33 100.0 35 ................................. CCTACCAAACGCTCTAGGTTTGTTAACGTCTCAAG 1531845 33 100.0 34 ................................. TGTAGCTGCCCTGTGTGTCGGCTTGGCTACCATG 1531778 33 100.0 35 ................................. GACCTCTTGGTCGAAGATCGACATCGAGAACCCTG 1531710 33 100.0 34 ................................. GGGTATATCTGTGTGATGCTACGGTTGTTATATA 1531643 33 100.0 35 ................................. AATACGCCACTTTCCTAGCTTGTATACAAGCGTAA 1531575 33 100.0 34 ................................. ACAACGGCTGCGCGCCTCGAGTGCGCATTATAGC 1531508 33 100.0 35 ................................. TATGATTATATATTTGTGATTATATATCGCTTTAT 1531440 33 100.0 35 ................................. TCCTTTCTTAAACCTTACGTCGCACTTCCACAACC 1531372 33 100.0 34 ................................. CAATTTTACGGGGCGGCCCGGACGGGTCGCTGGG 1531305 33 100.0 34 ................................. TCCAGGTCTAGGCGCTACGGGTTTTTTGATCGCT 1531238 33 100.0 34 ................................. TCCAGGTCTAGGCGCTACGGGTTTTTTGATCGCT 1531171 33 100.0 34 ................................. TCGACTTTTTTTTGTAAAACACCCCAGTGTGCCC 1531104 33 100.0 33 ................................. GTTTAATGCGGTATTGCGGCCTACGCGTTGCAG 1531038 33 100.0 35 ................................. TGCGCTATGTCGTAAGTGATAATCGTGTTTGTTGT 1530970 33 100.0 34 ................................. CTGCCGATACGTGCCATAGATGATATTGCATAAA 1530903 33 100.0 35 ................................. GACAAGAGGCAGTCTATCTTGTGGAGGAAAAACAA 1530835 33 100.0 34 ................................. CACTCGAGCCGCTTGGAATCGATGTGGTGGAGGT 1530768 33 100.0 36 ................................. GTCAAAAAGCCGCAAACTGTCGGTCGTCTCAGGCAC 1530699 33 100.0 33 ................................. CTGCGCCCCCAAGCAACAAAACCGCGGTGGCTA 1530633 33 97.0 33 .................A............... CTGCGCCCCCAAGCAACAAAACCGCGGTGGCTA 1530567 33 100.0 35 ................................. AAATTGCCGCCGATCTCACCCTCGCGTATACGGGG 1530499 33 100.0 35 ................................. CCGGAAGGCGTGCAGATCTTACGCCGAGCCAACCG 1530431 33 100.0 35 ................................. CCGGAAGGCGTGCAGATCTTACGCCGAGCCAACCG 1530363 33 100.0 35 ................................. TAAGGGAGAAAAAATCGAAAATACAAGCAACGCAA 1530295 33 100.0 34 ................................. TGTTGACCCCATGCGTAGCCCGCCTTGTAGGCTT 1530228 33 100.0 34 ................................. CGAAAGCTCGGCCCCTCGATCTCGCTGGTGGTGA 1530161 33 100.0 34 ................................. CCCCTTCTTACTTGATATGTAGGCGGCTGTCCCA 1530094 33 100.0 33 ................................. CATCAGCAATACCGCCCGCTCGATGTCGTCGCC 1530028 33 97.0 35 ............................A.... CATATCTTTGTCTCTTTCTTGGGATCCCTTTGTTT 1529960 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 47 33 99.9 34 GTCGCACCCCGTGTGGGGTGCGTGGATTGAAAT # Left flank : CTTCGTGAAGACCTGGATGCCTATCCGCCATTTTTCTGGAAATAGGAGGATCAATGAATATTCTGATCACTTATGATATTAACGTGCAAAGCAAAGAAGGCAGACGACGATTGAATCGCATGGCAAAAATTTGCCTTAACTATGGACAGCGGGTGCAAAACTCCGTCTATGAATGTGATTTGGATTCGGGACAACTCTTCCAATTAAAACAAGAAGTTCAGGAAACGTATAATGCAAAAGAAGATTCTGTAAGGATTTATAAATTGGGTAAGAACTACAAACAATCCGTTTTGCACTATGGAATCAAAGAAGTTTTGGCGCCCGGAGATCCGATCATATTTTAGACGAACCCTAAGCGAACAGAAAAAAGCGCGGAGGTTCGCCCCGGAAGTGTCGATGAAAGTATGTAAAATTGTAAGAGTTGCAATTAGAAACGAAAAAAGTTTCTAGAGAATGCGCTATATGCAGAGCAAGTGGCATTCGTGCCCCTACATATAGCT # Right flank : AAAAGATAGTTATACAGGAATATGCTCAATCGTTTATATCCCATAATTCTTCTTCAGCTAATTTTTTATATTCCGGATATAAAGCTTTTATATCTTTAGGCGTATTTTCTTCAAATTCCCACTGATCTTTTTCAAGATTAAACACCATGTAAGGGTCTATTTTTTTGCTTAGCTCTAAAAACCTATCGCTCATAAGATTTATCATAAAATCATCTCCTCGAATATCCTCTTACGTAATTCGCCTCGCAAGGTTTCGTTTCTTATTTTTACAAAAACTTCCGAAAACGCTGCGCAATAATTCTCATTTTTGAAATGCATGTAGGCATATAATCTTATTTCGTTCTTCACAGAGAAGACATAGAAGCCATTACGAGCTGATAGTTCTTTCAACTACTTTCTCAAAGGTTTTTCAAAATCCACCACAGTTCTGTTACATCATTATACCTCTTAGAATGCCTTTGGCATCGCTCCTTTTCTAATACATTAAGAAAACTGTTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.10,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //