Array 1 46597-45792 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNRC010000005.1 Flavobacterium sp. ALJ2 Contig_05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 46596 46 100.0 30 .............................................. AGAGCAACTTGAAATACGATCAAATTATGT 46520 46 100.0 30 .............................................. TATGAAGATTTAAAGAACGAATTACAACCT 46444 46 100.0 30 .............................................. ATTTAATGATTTTATTTGCCCAGACGCACT 46368 46 100.0 30 .............................................. AGGTGATAGCTGAAACAAAACGACTATCAA 46292 46 100.0 30 .............................................. AAGATAATCAATATAGAAAAGACGGAACAA 46216 46 100.0 30 .............................................. TCTTTAAGTATTATTTGACTACCATTGTTC 46140 46 100.0 30 .............................................. TCAAATAGATTTAATTATAACGTCGTTATC 46064 46 100.0 30 .............................................. AAGAAAAATAAGCGCTGCTACGGCACAACA 45988 46 100.0 30 .............................................. ACGATTCTTTAGTATTGTCAGCTGGTTCGT 45912 46 100.0 29 .............................................. AGGAGGCCTTTTGAGCGTGTTTAACCCGT 45837 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 11 46 100.0 30 GTTGTGAATTGCTTTCAAAATTGTATTTTTACTTATAATTCCCAAC # Left flank : ATCTGGGAGAAGATTGGAACCAGAAGAAAATTTCTATGCTGGAGCAAAAAGATGTAATAGAAGACAACCTGCTGAAACAAATTTCAGCTGTATTAAGAATTCCTGTAGAAGCTTTTCAGAATTTTGATGAAGAACAAGCAGTAAATTTAATTTCGTGTAGTTTCTCAGATAATGCAATGTTCAATAATAGAATTGAAACTTTTAACAACAATCCAATTGAGGAAATTAAAAAACTTCATGAAGAGAAAATTGTTTTGTTTGAGCGTATGTTGAAAGAGAAAGATGAAATGATGGCAAAACTTGAAAAATTATTCAATAAATAATTATTTATAAAGATATATTAATTGTAAAAAAGAGACTTTTGAAGTCTCTTTTTAGTTTTGGGGCATTATTTACGTGTACGAAGTCAGGAGACATTTGCCCACACAGCTTTTTAAGAGAACTCTTCGGTGAGTGGTTTTACTAACCAACTGTATATGTGATTTCAATTTTTCACACAG # Right flank : ATACCACGAGTTAATCGTTTGATATGTTGGTAGTTATATGTTTGTTTTGAAAATGAAAAATAGATTATTCTAAGACCTGAGATACAGTTAATTAGATGTTTTTTTAATCCTAATTTTAGAAAAGTTCTAACTGTTGAGATGGTTTTTCGGGTTCTACTGGTTTTTTTCCATAAAAAAGTTCCATCATTCCAAATTGTTTATCTGTGATTTGCATCACGCCAATTTTTCCATGCTCAGGTAAGCTATTTTTTATTCTTTTAGAGTGTACCTCGGCATTTTCCCGACTAGCACAAAAGCGCATATATATCGAAAATTGGAACATAGAAAAACCATCGTCTAATAATCTCTTACGAAAATTACTAGCAATTTTACGCTCTTTGCGCGTTTCGGTGGGCAGATCAAAAAATACTAATATCCACAAACTCCTATATTGATTTAAACGTGTATAATGCTCCTCATACATAAATTGGGTATAAAATTCTTCTGAGACTTCCCGCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTTACTTATAATTCCCAAC # Alternate repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTTACTTATAATTCCCAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTCCCAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 172336-174013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNRC010000007.1 Flavobacterium sp. ALJ2 Contig_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 172336 36 97.2 30 ..................G................. CTTCAATACAGAGCAATACACAACTCTTTT 172402 36 100.0 30 .................................... TGCAGCGTTACAGGCAGGCTCAATGATTGT 172468 36 100.0 30 .................................... TAGCTTGTATAGCGTTTCTTAAATCAATAA 172534 36 100.0 30 .................................... ATTATTTCATTTACAAACCAAGATGGAAGA 172600 36 100.0 30 .................................... ATAATGTTTTTTTTATAATGTCTATAAATG 172666 36 100.0 29 .................................... GAATTATTCATTTTTACTAACGTCTCATT 172731 36 100.0 30 .................................... TCGCACCATCGATGGTCGTATCTGTAATAT 172797 36 100.0 30 .................................... TATACTATATTACAACCATCGATACGGATT 172863 36 100.0 30 .................................... TGCTGATACGAATCAACTGCATGATTTTAT 172929 36 100.0 29 .................................... CATTTGAATAATCTAAAGCACCTTTAATC 172994 36 100.0 30 .................................... ATTTGTACGATGTTTCGAATGTTTTAACCA 173060 36 100.0 30 .................................... ACAATTAGCAAACCTAAATTCTCTTAGAAA 173126 36 100.0 30 .................................... GTATGATTAGTACAATTACAAAGCATGTAA 173192 36 100.0 30 .................................... CATTTATATTAGTTAAATTGCTGTGAACAA 173258 36 100.0 30 .................................... TTATACAAACGACAAATTAACACCAGACCA 173324 36 100.0 30 .................................... AAGAGATAAAAATTTCTCAATGACGGAGCA 173390 36 100.0 29 .................................... ACAGAAAGCATGAAGGCAGCCACACTAAC 173455 36 100.0 29 .................................... GTTTTAAATGATTAGTGCCGTTGTCGCTT 173520 36 100.0 29 .................................... TTAATACTAGTCAAATAAGCTTCACATCT 173585 36 100.0 30 .................................... TATAGACTGGATTATTTATGAAAGCGAATA 173651 36 100.0 30 .................................... TAAACTATTTATTTTCACTACTCCTCCCGT 173717 36 100.0 30 .................................... TGTATTTATAGACAAACCATTTTCTATTAA 173783 36 100.0 29 .................................... GTAAACTTATACCCTATTTCAACAGGTAT 173848 36 100.0 29 .................................... CCATAACATCTTCATGTTGTGGTGCGTGT 173913 36 100.0 29 .................................... CTTATTATTTACCGTATAACAAATAAATG 173978 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TGAAGGATTAGATAAAAAAGGGAAAATCAAAAGAGGATTTGAGAGTTTAAATATGATTGAAGCTGGAGAATACTTCAAAAAATCGAATTCTTCCCATCGATTAATTTATCCAATAGCACCCGAAGTAAATGAAGGCAATTTGAATCTTAAATTTTTAGCACGAAAAGGGATATTGGTGATTTTTTATGAAAAAACGATAGATGAGATTTGGAATTTATCACAAGTAGATCTCTCAAAAAGATTGTACAAACTTGCTAAAATTGATAATCAAGGAAGACTTACGTTTCGTCCACACGAAGAAGCAAGACCAGCAAGCCAATTAAAGGAATCTTATAATTTGGAGTTTTTGCAAAGTTCAGAGCAATTGAGGTTACCAGTAAGTAAATTAGATTGTGCGGTAGAAGGATATGATTTTGTAACTTCTTCAACAGGAAGAATTATTAAGAAAGATCATTTTTAGCTTTATGTTTTGGTAGATACTAAATGAATATCCCTCATTT # Right flank : TAGTTGGCTTGTTTCCTTCTGATATATAAGGTTTTAGGTATGAATATCGTTCATAAAAATGCCTCTTTTATGGTTTGATAACCCATAATTGTGGCATTTTTTCTATCGTACGGTTTGTAATATAAGGTTTTGGGAGTTGAAATGTTACTGATAATTATAAATACAGAAGTATTAAAATAATTCTAGTTGCGTGGGTTGAGGTGCTGATGGTAAGGCTGCTTTCCCCCAAAAATTTAAAATATGACCAAATTGTTTATCGGTTATTCGAAGTATGCTTACTTTTCCTAAAGGAGGTAATAGTCTGTGGATTCTCTTTTCATGTACATCGGCACTTTCGCTACTTGCGCAGTGACGCACATAAACAGAATATTGCATCATCGAAAATCCATCTTTTAATAAATTGTTTCTAAAACCAGATGCATTTCGTCTGTCTTTTTTTGTTTCTGTAGGTAGATCAAAAAAAACAAATAGCCACATTATTCGATATCCGTTAAGCTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //