Array 1 3203907-3204910 **** Predicted by CRISPRDetect 2.4 *** >NC_013716.1 Citrobacter rodentium ICC168, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3203907 29 96.6 32 ...........................G. GACTCTAACGCACTCAATCCACTTAATCCCAG 3203968 29 96.6 32 ...........................G. AAACCACTGTAACCGCCTTCTAAGCGGTTTGC 3204029 29 100.0 32 ............................. TCATTCCGGCGCACCAACTGGAATTGCTGGAA 3204090 29 100.0 32 ............................. TAATAAACAAAAATCAACGCATCCTGGTGGCA 3204151 29 100.0 32 ............................. CAGCTGGCAAGAACAAAATCGACTGGAGCGAC 3204212 29 100.0 32 ............................. TTTCGGTGCCGGAATGACGTGTGAGCGTATTT 3204273 29 100.0 32 ............................. ATCTGTTTATAGCTGGCTATAAAATTTATAAA 3204334 29 100.0 32 ............................. TGGAAACGAACACCGCAGGGGTACGTGATTAC 3204395 29 100.0 32 ............................. ACTACGGTTGATTTATAAGAGCTACCATCCGG 3204456 29 100.0 32 ............................. TACGCGACATGTATTTTTTGCCGTGTTTCATG 3204517 29 100.0 32 ............................. TTCATGGGGGGTCACGACCCAGCCGCCCAGCT 3204578 29 100.0 32 ............................. TACCCCATTCAATACGGGCGATGCTGAATAGT 3204639 29 96.6 32 ............G................ TTAATAGCTGAAACAGGTAAACTCAACCGCGA 3204700 29 96.6 32 ............G................ GCGTAAACCCAGGGCTCGGCTTTTTTGTGAGT 3204761 29 96.6 32 ............T................ CCATTATCGAACGCCGCGCTGAACTCGCTGAT 3204822 29 96.6 32 .............T............... ACGCAACCATCATTGTTGCTGAGCACCACAAT 3204883 28 79.3 0 .......T....AG...-....A.C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTACACTGCCGTTATCTCTCACCGTTCTGGCGAAACTGAAGACGCGACCATCGCTGACCTGGCTGTTGGTACTGCTGCGGGCCAGATCAAAACCGGTTCTATGAGCCGTTCTGACCGCGTTGCTAAATACAACCAGCTGATTCGTATCGAAGAAGCGCTGGGTGAAAAAGCGCCGTACAACGGTCGTAAAGAGATCAAAGGTCAGGCGTAATCCTGTACTTTCGTTCTGATATAAAAACCCGCTTCGGCGGGTTTTTTGCTTTATATCATCCAGTGATTTTGACCCCGGTCGTTCTGTCTCGATCGTGAATTGAAATTTTCAATGGTGCGATAATCATCACACTGTTTTGGTAGATTTGAAGAAAGAATAGCTACCATCTTCTTTATCTTATTAAAATCAACAGATTAGTTGCTCTTTAAAAATGACTATTTGTAAGGATTAAGTTGGTAGAATGTTGTATTGATAGAAATTGCTTTATAAACAGTTGGTTGTATTTAGT # Right flank : GTAGTTTTGCCTGGCTATCTGCGATCTGCGATAATGCGCCCTCATAACCCCAGACAGAGACGATTATGCAGTACCCGATTAACGAGATGTTCCAGACCCTGCAAGGTGAAGGTTATTTCACCGGCGTCCCCGCCATTTTTATCCGTTTACAGGGATGCCCGGTTGGCTGTGCCTGGTGCGATACCAAACACACCTGGGATAAGCTTGAGGATCGGGAAGTCTCCCTGTTCAGCATCCTGGCGAAAACCAAAGAGAGTGATAAGTGGGGAGCGGCGAGCAGCGAAGATCTGCTGGCGGTAATCAATCGTCAGGGATATACCGCGCGTCATGTGGTGATTACCGGCGGCGAACCCTGCATCCACGATTTAATGCCGCTTACTGCGTTGCTGGAAAAAAACGGCTTCAGCTGCCAGATCGAAACCAGCGGTACCCATGAGGTGCGCTGTACGCCGAATACCTGGGTGACGGTATCTCCAAAAGTGAATATGCGTGGCGGCTAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3224982-3225436 **** Predicted by CRISPRDetect 2.4 *** >NC_013716.1 Citrobacter rodentium ICC168, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3224982 29 100.0 32 ............................. GAGTATGTTTAAACGTTTACTGGCGCGCCTGT 3225043 29 100.0 32 ............................. TCATATGTTGCCGCGTTTCCAGACGTCATGTT 3225104 29 100.0 32 ............................. TGTCGGATAATCCGCACTTTTTGGCGAATGAC 3225165 29 82.8 32 GT.........AT...........A.... TATCGTTCCTTCGCGGATGTCGTCACGCAACA 3225226 28 86.2 32 ...........A....-.......A.T.. GAAGGTGATGAAATTAATCAGCGCAAACTGGA 3225286 29 89.7 32 ...........AG...........A.... ATATAGATAGCCATCAACAACACCGCTTGGAC 3225347 29 96.6 32 ........................A.... GGGCAGACGTTTGCCCGCTGGATGTAGCTATT 3225408 29 89.7 0 .............C..........A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 AAGTTCCCCGCGCGAGCGGGGATAGACCG # Left flank : GTGCTATTAGCCGGTGAAATCGAGCCGCCGCAGCCCGCTCCGGATATGTTGCCCCCAGCGATACCAGAGCCGAAGCCGCTGGGGGATAACGGACATCGGGGACGTAGCGGATGAGCATGATGGTGGTTGTTACGGAAAATGTTCCTCCGCGTTTACGAGGGCGTCTTGCTATCTGGATGCTGGAAATTCGCGCTGGCGTTTATGTTGCAGATGTTTCGAAACGCATCCGGGAAATGATATGGCAGCAAGTCATTCAACTCGGTGGTGAGGGAAATGTTGTAATGGCATGGGCGACCAATACGGAGTCAGGTTTTGAATTTCAGACATGGGGTGAGAATCGTCGTATTCCCGTGGATTTGGATGGACTTCGTTTGGTCTCATTTCTTCCTGTTTAAAATCAAATAGTTGACTGATCTTTAAAAATGTGGATTTGTTGATTTTAAGTTGGTAGATTGTTGCCTTTGAAGAAAGTCTTTTAAAATCAGTCGGATATTTTTAGT # Right flank : GGGCTAATAAGGGTGCCCGGCACATGACACAATTGTTTCTATATTGTACCCATTTTTACTATCATTTCTTATGCTTCAGTTATACTGGTATTAACCAGAGTCCACAGAAAACTGGAGAAGGGTAAAGCCAGATTTGCTCGTTGATGTAAGCTCTCTTTTTGGATTTCAGAGATATAATAATATTAGCAATAAAACTTCCGAGGAAAAACAATACGCCTGACATGTCGTAAGCCAGACCACCGTAACCTGCATTCCGGCTCTTAATGTAAAGCAATATCATGGCTGTGACGGGATAAAGCATCAGCAGCAACGTCAATAATATCTGTTTTTTTAAGCGCATTTCCCTTGCAGACATTACGCAAAATATAATAAACAGAAACAGCCTGCCTGAATACCTGTATCTACCCATAAAAAATGAAAAGTCCGAAAGCATAGACATGAGTTGTTTAATCGATAGCGTTGTTTTACCCTTCATAACGTGATTGCCGGAGGCAATCACG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTCCCCGCGCGAGCGGGGATAGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //