Array 1 540800-543082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQFL010000001.1 Klebsiella pneumoniae strain KP18 NODE_1_length_722107_cov_25.846983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 540800 29 100.0 32 ............................. TCGCGCGTTGGGGCGCTGACGCGTATCGACGA 540861 29 100.0 32 ............................. ATGACTGGGCCTTATAATCACGGAAATAATCC 540922 29 100.0 32 ............................. AAAACGCGACAATCGCAATCAACAGTTATTTT 540983 29 100.0 32 ............................. CGCAATGAACAGTCTGGTCTGGTTATTTACTC 541044 29 100.0 32 ............................. CGCCTCAACAAATGCGACTTCATAGCCTGCTG 541105 29 100.0 32 ............................. GCTCGGTGTGGCCTAAATCAATTCGCGGATCC 541166 29 96.6 32 ............................C CTTGCATACGTGTTACCCTCCATAACCTCACA 541227 29 100.0 32 ............................. CGTCGCCTGGCCGTCTGGTAAGTCCGGTTTTA 541288 29 100.0 32 ............................. CAGATATCGGCACCGCGAGGTTCTGAGTCGTA 541349 29 100.0 32 ............................. AGATCGAATAGTCGTAGTTTGTTTTACGGCAG 541410 29 100.0 32 ............................. CTGGAACGGACCCTGAGCGCCTTTGGGGGAAA 541471 29 100.0 32 ............................. ATTTCTCCGGTTGCCCCGGGTTCCCGGGGCAT 541532 29 100.0 32 ............................. GTGCTGGCCTTGAGCTTTTCAGCAATACGTCC 541593 29 100.0 32 ............................. TGCAGACGCGGCACTTTTACCCACGCTTGAGC 541654 29 100.0 32 ............................. ATATTCCGAGCGTTGCCAGCCTGCTGCGCAAT 541715 29 100.0 32 ............................. GCGGCGGCGTTAGAGCGCGCGCCAGCGTTTTC 541776 29 100.0 32 ............................. ACGGCATCTGCGAAATTCATGTTGCTAAATAC 541837 29 100.0 32 ............................. GCTGCGTATAAAGGCTGCAGACCGGAGAGAGG 541898 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 541959 29 100.0 32 ............................. CGTTATTTTAAAAGCTGACGGCGAAGTGGTGG 542020 29 96.6 32 ............................A GCGCACCCGAACCATTACGGGGCTTGCCATTC 542081 29 100.0 32 ............................. GCCGAGTTCGTCAATGCTATGAATTTTATAAC 542142 29 100.0 32 ............................. CCGGACAACGCGGTCAGTACAGATTTCATTGG 542203 29 100.0 32 ............................. TTTTTTTACTTCCGCTGGCGAAGCGGGCGAAA 542264 29 100.0 32 ............................. AGTGGCGTTAAAAATGTCGCGGGTAATTTGTT 542325 29 100.0 32 ............................. TGCTGATTTCGTTTGCAGGGAAAATGGATTTT 542386 29 100.0 32 ............................. GGCAGCGAGGCGCAGATCCCGCAGCTTTACCA 542447 29 100.0 32 ............................. TTCGGCCAATAACCGACTATGTGAGGGACTTT 542508 29 100.0 32 ............................. CCCGATAAATTCACTCTGTGTCATACGGTGAT 542569 29 100.0 32 ............................. ATCTGATCAGCGAATACATGAAGAACAACCCA 542630 29 96.6 32 ......T...................... GTTTGATCGGCGTCAGGACAATATCCGCGGGC 542691 29 100.0 32 ............................. TGATCCACGTAAGCAAGCAAAGTGATCCGCCA 542752 29 100.0 32 ............................. AGGAACCGTTCCGGCAGATAGCTCTTACGCTC 542813 29 100.0 32 ............................. GCATCGACGCCCGTATCGTTATCGACAAAATA 542874 29 100.0 32 ............................. ACACGTCGTTAGGTGTTCCGTACTGGGAGAAA 542935 29 100.0 32 ............................. CCAGGCGACCGTATCTGGGTGCGTGAAACGTG 542996 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 543054 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2594-1412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGQFL010000036.1 Klebsiella pneumoniae strain KP18 NODE_36_length_21117_cov_48.049786, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2593 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 2532 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 2471 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 2410 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 2349 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [2296] 2295 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 2234 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 2173 29 100.0 32 ............................. TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA 2112 29 100.0 32 ............................. CGGTAACGCAAATGTGATCCGATGTCGTCAGG 2051 29 93.1 32 .............T.A............. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 1990 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1929 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1868 29 93.1 32 ...........CG................ AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1854] 1806 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [1794] 1744 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [1733] 1682 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1621 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1561 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1500 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1439 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //