Array 1 32880-33213 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZK01000106.1 Gluconobacter japonicus strain LMG 1373 LMG1373_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32880 29 100.0 32 ............................. TATCCGCCGTTACTCAGAGCGGCAAAAGTCCA 32941 29 100.0 32 ............................. TCCGGCCATTTTATCCCCTCGGTTACAACCGG 33002 29 100.0 32 ............................. AGTTGTTATCTGTTGGGTTCCAGCCCCAAGAT 33063 29 100.0 32 ............................. ATTGCCAATCTGGATGCGGTTGCTAATGCGGC 33124 29 100.0 32 ............................. CTCTGATACGTGCCAGCCTGATCTCCGTAGGG 33185 29 86.2 0 ..............T...........ATT | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GTAACCGTTCCCGGTTATACCGGAGCGCTGCTTCCTGCAGGACGCGGATCATGGGAACCATGTGGTTACCCATGTCCCTGATGCCTGCAAGTTCCCGATTGCTGGCGGAAAGCAGGGCTGCCACCGAACCAAAGCGTTCCAGAAGTGCTGGAACGAGGGTGTCCACTTTTTCTTTACGGCCCGTAAAAATCTGAACGATCAGGCGTAACAGAGTGTCATCGTCCAGGCGCCGTCCCCGTCCGCTCAGAAGGGCAACAGGGGGCGGAATATGCTCGTTGTTTGTCGGCTGTGGGTTGATGGAAAATGGTACGGTTTGGAAAAGGATTTTTCCTGAGTATTCAGCAAACCCATCATCAGAGGCCGGAGCATTAGTCATTTGTTTTTCTGGCACTGTAAGGCGAAGAAGATCAAGGTAGCATCGGCACTCAAAAAAGCTTAAAAAATCGGTAGATTTTTCGAGGGCTGTTTTTCCTTTGGAAAACAGCTATCTAACAGGAAGA # Right flank : TTACAGGAGGCCTTCCTGTCTGAGGCTGCTGAGAGTTGTTGTTTGGGTGCTGATAAGGACATCATGCAAAACAATGGAGAGTGGCCTGAGAGCGTTTTCCAATGTTCGTGCGGCTGTTGAGAGGGCTGGTGCTCTCAGGGCGGGCTGGACGTGTACGCCGATGATGGCTGTAGCGTGCAGAGCCAGGGCGCGAATGGCGATGGCGCGGTTCAGGAAGGTGATATCTTCTTCTGGCGGAGCTGCTTCATCCGCGAGGAGCCGGTTTCGGTTATCCAGATAGAGAACGCGAAGCTGTCCGGCGACTGCGCTTTTCAATGCTGTTTCAAGGTACTCTGTCAGTTGGGGCCAGTTTCCCAGAACCGGGCGTTCCTGGTGTTCCGCTGAAGCGAGGCGTTCTGCGGCGACTGATGGTAGGCGAAGGGCGCGGATGGTATCGTCGTTCAGGCCGGCATTTCGCAGATCGCGCGTTGGCGCACGGAAGACGTTGATGAGGCTTCCGA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22928-22411 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZK01000113.1 Gluconobacter japonicus strain LMG 1373 LMG1373_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22927 29 100.0 32 ............................. AAATAAGGATGCGTCCTTCATCTCGGATTGAT 22866 29 100.0 32 ............................. GCAGCTTTCTTCTTCGCGTCCGTTGGCGCATC 22805 29 100.0 32 ............................. ACGAACGAAAGCATTTTCTCGATTGAGGTCAT 22744 29 100.0 32 ............................. TTCTGCCATTACAGAGCGGCGAAACATTACTC 22683 29 100.0 32 ............................. TTTGGGGGCGTATCGTCGGAGTAAACCGCATT 22622 29 100.0 32 ............................. TACCATCTGTCTGAGAATACAGCGGGCGGTGG 22561 29 100.0 32 ............................. ATACCTAACGAGCAGGCCAGATCGGCACTATG 22500 29 89.7 32 ...........A.GT.............. CTGGTGATCCCTAGGACATAGCAGACGGCCGA 22439 29 69.0 0 A..........A.GC........ATT.TC | ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGTTCCCCGCGTAAGCGGGGATGAACCG # Left flank : CGGGAACTGCGCGTTCCATTCCGGACGGCCCATCACGTCACGGGGCGTCTTGTAGGTCTGGCGGAACAGCGTGGTTGTGATCTGGCGGACCTGTCTCTTGAAGACATGCAGGCCGTGGAACCGGGCATCAACGCCGGCATTTTCGATGTTCTAACGGTTGAATCTTCCTTGGCGTCCCGCACCAGTCTGGGCGGAACCGCTCCATCCAACGTGCGTCAGCAGGCTCAGGTCTGGCTGGAAAAACTTGGAGACGCTGCATGAGACGTTTTCTGCTTGTTGGCCTGACCCTCGTAGCACTTGGCACCGGCCTGAGCGCGTGCGGAAAGAAAGGGGCTCCTCACGCCCCCGGTCCGGCTTCAGACATCACCTATCCGCGCAGTTATCCGCCTGAATAATTGACGTTTGCAGGGATCTGTGAACGCGTGAAAAACAGCCTGTAAAAATCGGTAGATTTTCAGGAATGGAAATTCTCTTTCTGTATCAATATGTTGTCAGGAAGA # Right flank : AACTTTGAAACGCTACGCCGCTTTTTCAATCTCAGACATAACAGGGGTATGGCCGCTCCCGGCGAGCGGCTACGATCAGCTATCCCCCAGCGCTTTAACCACCAGTGGGTGCTGCAGCACATTCTCTGCAGACCAACCCAGCGAGCGGAGGACACGCACCCCCTCTGCGCCGTCACGTTTGGAGAGCTTTTTTCCCTCATCATCCAGAATGAGGGCATGATGCCTGTAAGCAGGTTCAGGCCATTTCATCAGAGCCTGAATCACACGATGAACGGATGTGGCAGCGTAAAGGTCCTGTCCTCTTGTGACGCAGGTTACGCCTTGTAGGGCGTCATCATGGGTCACGCACAGATGGTAAGACACACCTGTGTCTCTGCGCCCCAGAACGATATCGCCAAATTCTTCAGCGCGCCCCGCAATCCGTCCCTGCCCGACTTCATACCAGGACGGCACACCGTGGATTTCATTCAGGGCCCGCTCCATGTCGAGCCGCCAAACCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTAAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17281-16886 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHZK01000094.1 Gluconobacter japonicus strain LMG 1373 LMG1373_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17280 29 100.0 32 ............................. ACGGATTTACCGTTACCTGTTGGGCCGAAAAC 17219 29 100.0 32 ............................. AACAATGCCGAGTTTAGGCGTAACGTTTGACT 17158 29 100.0 32 ............................. GCGTTTCACTTCTCTTGATAATGAGACTCGGG 17097 29 100.0 32 ............................. GAACCCAACTATATCAAACAGGCTGCGGTCTC 17036 29 100.0 32 ............................. CCGCATCAAGGACAAGTTTCTCTCTGAGTGGG 16975 29 96.6 32 ..............C.............. GCTACTGTCGTGAACACGCTTCACCTGGCTGG 16914 29 86.2 0 ..............C...A....A..G.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.5 32 GTGTTCCCCGCACATGCGGGGATGAACCG # Left flank : TGATCGAAGACGTTCTCTCCGCAGGCGGCCTCTCCCCTCCCGAAGCACCGGAAGAAGCCATGCCCGTGGCCTTTGAAGACCCGGAAGGATTGGCCGATGCTGGTCATCGTGGTTGAAAATGCCCCACCACGCCTGCGAGGACGGCTTGCCGTCTGGCTGCTGGAAATCCGTGCAGGCGTTTATGTCGGAACTTATGGTAGAAAAGTCCGGGAAATGATCTGGCAACAGGTCTGCGCCTATATCGACAGCGGCAATGCCGTCATGGCCTGGGCCGCCCCGAACGACGCTGGATTTGAGTTCGATACCTGCGGTGCAAACAGACGTTGCCCCGTAGATCTCGATGGATTTCGCCTGGTCGAATTCGGCCCCGAAGCAGCCCTCCCCCTCCTGCCCGGCCCTCTTAATTCTCCCAACCGAAACAGGCGTTAGAAACCCTTTGAAAATCGGTAGCTTTTTGAAGTGGAAAAATTCCCTTCTTAATCATAAACTTGCACACAAGA # Right flank : TCAGAACCAGATCTGTAATACCTGCACAAACCTTACTGCCCGTCCCACATACCCTTGCAGACAAGGAGACATCCCATGAGCAAACTCACAAAAGAAGAACGGGACAGCCTACCTGACGATGAATTCGGGCTCCCTGAAAAACGGGCCTATCCTGTCGATACCAAGGCACGAGCACGCAATGCGAAAGCCCGCGCTACGCAGGAGTTAGAACGGGGGCTTCTCACACCGGAAGAGCGGGATGAAATTGACCGTGCCGCAGATCGAAAACTGAACGAAGACTAGCCAGAATCAAAAACGGCTCCGGATCACTCCGAGGCCGTTTTCTCTCAACACCTAATCAGTTCGCCTGCGCCGCCCGCAGCGGGGCATCAGCAGGAACATCCTTGAGCGGAATCCCTTGATACTTGCCCGTCAGGGTCTTCAGGAACGCCACGATGTCTGCAACATCCTGGTCGGTAATATCATGATCCGGCGTTTCGTAACGTGCCATGGCACGCACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //