Array 1 31006-30807 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MVTM01000005.1 Helicobacter pylori strain HP16008 Contig_5, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     31005	    28	 100.0	    26	............................	GGTGTCGTTATTAAAGCTAGCGTTAT      	
     30951	    28	 100.0	    29	............................	ATTGCTGTTTTCAAAAGTGGATTGGGCGC   	
     30894	    28	  89.3	    32	.......G.G......C...........	GTTACTATTACCAAAGCTTGAACTTGTGCTGT	
     30834	    28	  92.9	     0	..G......G..................	|                               	
==========	======	======	======	============================	================================	==================
         4	    28	  95.6	    29	TATTAAAATTATAAGTGCCTTGATTGAA	                                	       

# Left flank :   TTCTAAATTCTGAGCGTCTTTAAGGATAGTAGGATTACTGCTTTTAGTGTAGTCTGTATCGCTATTTGCGATCTTATTATCACTAGTAGCGTTATTTAAAGCGTTTTGGGAATGAGTGAGATCCTCTTGATAGGTTTGTTGGGCTTGTTGTTGTAAATCGTCTCCTAAAAATTGGGTAATAATGGATTGGTTGTTAAAGGTTTCTTGTAAGGTTTCATCTTGCCCGTTAATATCAAAGGTTACATCATAAGTGTTATTGCCCACTTCAACATGGCTAATGGCTTTATCGCCCTTATAGTTGATTAGATCCCACAAATAGCTTTGATAAACCCCATACTGAATGGTCCCATTTGTAGTAAGAATGTCATAGGTTTGGTTGCTATTAAGGGTTTGATTGAGATTAAAGATCGCATCAGAATTAAAAGACACGCTGCCTTTAAGGCTGGCAAAAGGCGAACTTGAATTTAAAGTGTTAGTGCCTGAAAAACTCACCTTGCTGG
# Right flank :  GCTCGTTTGATTAAAGGAGATGGTGCTGTTATTACTATTACCGCTGAAATTAAAGCCCCCATCAGTATCATCTTTAAAGCTAGAGCCACTGACCTTGATATTAGAGCCTTTAAAATTCATGTAAGAGTGTTGCGTCCCTGCATGGCTGTTATCCAAACTCGCTTGATTGATAGTGATATTGTTGGTCGCGTTAAAATTGAGCGTGGCCCCACCACCATCAGCGTATGAGTTTCCGGTTGTGATATGGCTAGAATTAAAATTAATCGTTTGAGCATCATAAGTTCCAGTGATATAGCCGACATCACCTCCATTAATACCTGTGCCTCCAAAGCGGATATTCCCTCCCACATTAAGCGTGCCGCCATTGAATTTTTGCGTGAAACTAGCCCCACCAGCGCTATAAGTGGTAAGGGTGTTCAAATAATAAGTCCCAGAGCCTTGAGCGCTGCTAAAAAGACAATAAGAGTTGTGCGTGGGTGAATTGGGACCGCTTTCAATAT

# Questionable array : NO	 Score: 2.54
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.09, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     TATTAAAATTATAAGTGCCTTGATTGAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:78.57%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//