Array 1 2334461-2335141 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017844.1 Escherichia coli strain FMU073332 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2334461 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 2334522 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 2334583 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 2334644 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 2334705 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 2334766 29 86.2 10 ..............C......G..GT... TGTTTTATAC G,C,G [2334780,2334786,2334791] Deletion [2334805] 2334808 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 2334869 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 2334930 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 2334991 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 2335052 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 2335113 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2361033-2362159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017844.1 Escherichia coli strain FMU073332 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2361033 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 2361094 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 2361155 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 2361216 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 2361277 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 2361338 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 2361399 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 2361460 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 2361521 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 2361582 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 2361643 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 2361704 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 2361765 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 2361826 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 2361887 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 2361948 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 2362009 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 2362070 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 2362131 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //