Array 1 206293-204739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQW010000011.1 Klebsiella pneumoniae strain MRSN25947 MRSN25947_contig00011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 206292 29 100.0 32 ............................. GAGAAGTTCAGCCCGCGTTCGGTTTCCACAAT 206231 29 100.0 32 ............................. CGCGCCTGACCGCGGCGATCGGCGAGATTCGC 206170 29 100.0 32 ............................. GTCGAGAGCACGCCGAGCGATAAATTGCCGCC 206109 29 100.0 32 ............................. GGACCAGTCGCAATCTCAGCTACAGGTTCCTG 206048 29 96.6 32 ............................A ACTTTCAGCGCAATGTCGAGGCTCCCGTCGGC 205987 29 100.0 32 ............................. GTGATGGCGTGAGTGATTTCGACAACCTCTTC 205926 29 100.0 32 ............................. GCGAGGCTCAGCCGGGTGCGATCCATTTCCCA 205865 29 100.0 32 ............................. CCGATATCGAGAAAGAGGGATCGCCGACATTC 205804 29 100.0 32 ............................. TGTCATTTATGTTCGCTTACTCTTCAATCGAA 205743 29 100.0 32 ............................. CAGCAACCGGCAAATATATCGCCGGTAACGAC 205682 29 100.0 32 ............................. TTTACGTCTACCCAACCAGGGCGCTGACTAAT 205621 29 100.0 32 ............................. CGCTACAAATTGCCGCTGGTTTTTGCAGACTC 205560 29 100.0 32 ............................. TTACCATTGCTGGTAAAAAACGCGTTCGACAG 205499 29 100.0 32 ............................. TTACTTACGTTACTTCAGTGGGCGGATGCGAA 205438 29 100.0 32 ............................. ATTGACCTGTCAACGATCCCGGTTCCTGATGC 205377 29 100.0 32 ............................. ATAACGGCCTTCAACTGGCTGTGAACAATCTC 205316 29 100.0 32 ............................. ACGTCGATAATGAAACTGTCCCCGGACTGAAC 205255 29 100.0 32 ............................. GAGAGGCGCGAGCCAGGCTTCAGGCCCAATAT 205194 29 100.0 32 ............................. CCGCGCAGCTGGACAGAGCTAATCGGTTTGAG 205133 29 100.0 32 ............................. TGCCGGTGAATTTATTTGCCCGGAACACGGCG 205072 29 100.0 32 ............................. CGATCGCCAGGTACTGTGAACAGATTCGGGTC 205011 29 100.0 32 ............................. GTTGAAAACCCTCTTCACGTAATTTATCCAGC 204950 29 100.0 32 ............................. CGGGGTTCTCTTTATACAGCCAGGCTTAACTG 204889 29 100.0 32 ............................. CTGATCCAGTTTTGCCGTTTCCTCTTTCTCGA 204828 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 204767 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCTTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 104128-102826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQW010000024.1 Klebsiella pneumoniae strain MRSN25947 MRSN25947_contig00024, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104127 29 100.0 32 ............................. TCACTTTGCGCGCAGCTGGGACATGTAAGTTA 104066 29 100.0 32 ............................. TAATTCAGGAAATGAATTCTAAAATCGACTCT 104005 28 89.7 32 .....-......CA............... GCCATGCAACGTCTGAACGTCCGAAACATCCC 103945 29 93.1 32 ............CT............... CGAATCCTCAGCGCGTGTCACGGTGACTGACC 103884 28 89.7 30 .............A..T....-....... TTACTTTAAGTAGTGCATTTTTTTGTGTTT 103826 29 93.1 32 ............CT............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 103765 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 103705 29 89.7 32 ............CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 103644 29 96.6 32 .............C............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 103583 29 100.0 32 ............................. AATCGACATCTCGTCCGTGGATGCGAAAAACA 103522 29 100.0 32 ............................. TGACTTTTGCGCAGCCTCAGGGCTCCGGTTTG 103461 28 89.7 32 .....-......CA............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 103401 29 93.1 32 ............CA............... GCACCCTCACGGATACCTTTTGCACAGTGTTA 103340 29 86.2 32 ......T.....CA..............C CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG 103279 29 100.0 32 ............................. TTACTTTTTGGCAGTTGGTAAAACACTTTTGC 103218 29 93.1 32 ............CA............... GAAAGTAGGGGCTACGCCGGAATTCCGAAGAG 103157 29 100.0 32 ............................. GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 103096 29 96.6 32 .......A..................... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 103035 29 93.1 32 ............CT............... TGACTTTTAAAAAAAATCAGCTGAAACAGCCG 102974 28 96.6 32 .....-....................... TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 102914 29 93.1 32 ............CA............... CACTACCAGATCCGAATGGACACCCGTAATGA 102853 28 82.8 0 ............CAC........-....A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 94.1 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCTTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCATATCTTGCAGGTTGCAATCAGAAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCACTAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGAACCAATTTATACTGTTTATATATACAGTATTTTTAGGTGGTCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCAAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATCC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //