Array 1 107810-98686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHQL01000005.1 Halomonas alkaliantarctica strain FS-N4 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107809 29 100.0 32 ............................. CGATGAAGAGAAGGATGCCTTGGTTCGCAAGA 107748 29 100.0 32 ............................. CCACTAGGCGCCTTTGCTGATCAGGTGCGAGA 107687 29 100.0 32 ............................. AGATGTCTTGAGAATTTGTGGAGCGCTTTTGG 107626 29 100.0 32 ............................. CACGACGCCAGCAAGCACACCGTGACGTTCAG 107565 29 100.0 32 ............................. TACCAGTCGCGCTCTGATTTGCTCAAGCAGAA 107504 29 100.0 32 ............................. TTGGATTCGCGTCACGATTAACCACGGGGATA 107443 29 100.0 32 ............................. ATGCAAACGCGCAAATGGCAGGATCAAAACGG 107382 29 100.0 32 ............................. CTTGCGGCTTTGCTGCTCGCGTTGCTGGTGAG 107321 29 100.0 32 ............................. GTATGAGCCAGGCCTAATCATCTACGTCGATC 107260 29 100.0 32 ............................. GCAATGTTGTAGCTCGCGAGAGTGCCGGGTAC 107199 29 100.0 32 ............................. CGGCGCGACATTGACCAGCGCCTGCAAGACAT 107138 29 100.0 32 ............................. GGTTGAATCTAGACGGTGTGCCTGCTTGCCCA 107077 29 100.0 32 ............................. ACCTAGCAGGGCAGTTCGAAATAACTGAGATT 107016 29 100.0 32 ............................. TAAATGTGGTGCTGGATGTGTTGCGCCCATCA 106955 29 100.0 32 ............................. CAAGTTTGAGCAAGCGCAGTTAAAAAAGCCGC 106894 29 96.6 32 ............................C CTATGAAACCAACGACTAAACAATGCCAGCGC 106833 29 100.0 32 ............................. CGGGGAAGAATAATTATGAAAAAACTAATAGT 106772 29 100.0 33 ............................. CCAGCACTTCGCACAGGCATGGAATGCCGGAAA 106710 29 100.0 32 ............................. CTCATAAGAGGGCAAACAATGAACATCACAAC 106649 29 100.0 32 ............................. CAGGCGTAAAGCGTAAAAACGGTACTGCCATG 106588 29 100.0 32 ............................. TTAGACGCTGTTACACTTCGTAAGATCAAAAT 106527 29 100.0 32 ............................. TACCGCAAGCGCTGGAACTCAAAGCACGTTGA 106466 29 100.0 32 ............................. CGCTGCAAGGCCAGGAGATTCGCGTCGAGTAC 106405 29 100.0 32 ............................. CAGAGGGGAGTGAGTGATGAGAATATATACAA 106344 29 100.0 32 ............................. CAAAGAGCCTTCGCCAGAAACCGAGCTGAGGA 106283 29 100.0 32 ............................. TTGCTTATTCATGTTCTTATCAGAGAAAGTTA 106222 29 100.0 32 ............................. CGGGGATTCTTCAGATCGTATAAAGCGATCAT 106161 29 100.0 32 ............................. TTAAAGCAAAAGCCCCTAAACCAGCATCAAAC 106100 29 100.0 32 ............................. TTGCTTAGCGGCATCGGAACGTGGTTTTAGTT 106039 29 100.0 33 ............................. CGGCCTTATCCGTGTCTGACATATCGTTTAATT 105977 29 100.0 32 ............................. ATTGATAATATTTTTAATGCCACTAGGGCCAC 105916 29 100.0 32 ............................. CGCATGCTGGATTGATAAAGGAGCCTTCATGT 105855 29 100.0 32 ............................. CGTGGTGTTTCCGGCCTTCCGCGCCCTTGGTC 105794 29 100.0 32 ............................. CACACCCTGGACTTCCATATCGGCGTCAAGAA 105733 29 100.0 32 ............................. GTACATTGCGAGCAAGCGGTGACGATGATTAC 105672 29 100.0 32 ............................. ACCAGCCACCCGGCACCATTCCCTGAAAAACT 105611 29 100.0 32 ............................. TTGAGGAGCTGGATAGCACTGAACGTGGCGAT 105550 29 100.0 32 ............................. CTAAGCGGAAACATGGCGCAGGCAGTTGGCCA 105489 29 100.0 32 ............................. TCGCTAAAGGCGGCACTGTCGTGCTTGCCATC 105428 29 100.0 32 ............................. TACGACTGCACCGTGGCGCATCTATGCACGAC 105367 29 100.0 32 ............................. CCAATTAGCGATAAGAAGGGGCGCTCCAGCCC 105306 29 100.0 32 ............................. CCATACTGCACAATATCGAACAGCGCTGTGAC 105245 29 100.0 32 ............................. CCGTTAAATACGCCTGATAAGCTACAAGAACT 105184 29 100.0 32 ............................. TATGTAATAGCGTTAAGCGCCCTTCTCCCAGG 105123 29 100.0 32 ............................. CCAAAAAAAGGAGCGCAAGAAACAAAAGGCTA 105062 29 100.0 32 ............................. GCGTTCCTTATGTCGATGAAAGCGGCCGGGAG 105001 29 100.0 32 ............................. GCCAGCGACTTAGGCCGAGAGTTCAGTAAAGG 104940 29 100.0 32 ............................. GCATGATCCGCGTCTTGTGCGGCGCATGGGGC 104879 29 100.0 32 ............................. CCCCGCTATTAACGCCACGGGGCAGGCGTGTT 104818 29 100.0 32 ............................. CTGGTCATAGTGACTCCTCAACAACCCCATCC 104757 29 100.0 33 ............................. AATAATGGTAATTCTCAAGTCCAAGCCCAAGCC 104695 29 100.0 32 ............................. CAAGCCCCCTCGCGCCGAGCGAGTACACAGCT 104634 29 100.0 32 ............................. GGAGGCGTGTTAATCGTTTAGTTCTGACTCAA 104573 29 100.0 32 ............................. CATGGGACGCAGAGCGCACCGAAGCCGAGGAT 104512 29 100.0 32 ............................. GTTCAGACCCAGCAAAAACTGGTTGCCGAGCT 104451 29 100.0 32 ............................. CCGCTGGCATCGCCGTTGACGAGATAGGACGC 104390 29 100.0 32 ............................. CACTCTTTTACGCCTAAATGCTTGCCTTGTGT 104329 29 100.0 32 ............................. GATCGTTACCCGAAGGGACGAGACGCGCGGGG 104268 29 100.0 32 ............................. TTTGAAATATCTCTTCCCTCTTGGGTATTCAT 104207 29 100.0 32 ............................. ATTGTGTTAGTAAATTAAATGAGATTAATAGC 104146 29 100.0 32 ............................. CTACTAGCGCTTCAGCTTCGTCTAATGGTAGC 104085 29 100.0 32 ............................. CTGTATTTGTTGATTGCCCGTGCCTATATCGC 104024 29 96.6 32 ............................A GCTGTTCAATCTCAAAGACCGACCAAGAACCA 103963 29 100.0 32 ............................. CTACTATTTGCTGTGCCATTTCTTCTTTTTCG 103902 29 100.0 32 ............................. GGGACTCATCAGGGAGCTTAGGATACCTAATA 103841 29 100.0 32 ............................. TCTCGCTCCGATTGGTTTACAGAATGGAGCTA 103780 29 100.0 32 ............................. GTATTGCAGGTGCCCGCCAGGCATTCGTACAG 103719 29 96.6 32 ............................A CAGGCTATCCAGCCCGTGCTCAACGGTATGCA 103658 29 100.0 32 ............................. TTGTCAGAAACAGAGTTTGATCTTATACGCTC 103597 29 100.0 32 ............................. TAGGGGACAATCCTGATGTTTGGCTACCTATT 103536 29 100.0 32 ............................. TTCATGACAGCTACTTTCATTTTTTAGGACTC 103475 29 100.0 32 ............................. CCATTCGGGGCCACGTTTGTGCCTGCATAGCG 103414 29 100.0 32 ............................. TCAGTGAAACGATCCTCGCGGGTGTGCCAGGC 103353 29 100.0 33 ............................. AAAGCCTCGGTTGTCTTTACGCTCGGCCAATAC 103291 29 100.0 32 ............................. CCATCCAGCTACAACGCCTTTCCCATATTCTT 103230 29 100.0 32 ............................. AGCTAGATACTTTTAAACGTTCTATTCTATCT 103169 29 100.0 32 ............................. GGCGGACGCATCCCTAGCGGACAAGTGGGCGT 103108 29 100.0 32 ............................. GGGAGGGCGAACGTCACCTGACGAACCTTCAA 103047 29 100.0 32 ............................. AGTTCGAGGACGACAACGGCGAGAAGTACATA 102986 29 100.0 32 ............................. CGCCTGGATCTGCTTGCGGAAGGTGGTATAGG 102925 29 100.0 32 ............................. GTTCGGATGGCACCCTGGAACCGCCTGTGTGG 102864 29 100.0 32 ............................. ATCCCCGCGCCGAGTTTGCCGAGGCATTAAAA 102803 29 100.0 32 ............................. ATAAACCGAGTGTTCCAGCGGTATTGCACTGG 102742 29 100.0 32 ............................. CCTACTACTCCTATATCTATGACCTTAAAAAC 102681 29 100.0 32 ............................. CCTCTCTCTGCAAAGCTGACAATATCGCCCGC 102620 29 100.0 33 ............................. CCATATTGTGTCTCCATGCGCTCGGGGAAGTCC 102558 29 100.0 32 ............................. CGCGCCAAGCTGATTGCGTCGGTGCCGTGGGT 102497 29 100.0 32 ............................. CTGCCGAACCCGGATGATCCTATTTTCGGTAT 102436 29 100.0 32 ............................. CCATTTGCTTTCCTCTAGGCATGAAAAAGCCC 102375 29 100.0 32 ............................. CATATAGCGTAGAGGGCTGCACACCTCCTGCT 102314 29 100.0 32 ............................. GACGTTAACGACCGAATTGGCGACTTTGTTGC 102253 29 100.0 32 ............................. CATAGAGCGTAGAGGGCTGCACACCTCCTGCT 102192 29 100.0 32 ............................. TATGCTTCAATCAACTGCTCTGGGTAGGTGTC 102131 29 100.0 32 ............................. CATTGCGTCTGGTGACACGCTGGTGTATCGAT 102070 29 100.0 32 ............................. CGCAGACCCGCGTGACCTTTACGACAACGCCG 102009 29 100.0 32 ............................. CGTGGAGTCTAGGCGATGCGCCTGTTCGCCCA 101948 29 100.0 32 ............................. TATTGGCAGGCGTGGTGCCTGGAACAAAAAGA 101887 29 100.0 32 ............................. ACGTCCTACCGCCGTCTGTGCATCCTGAAACA 101826 29 100.0 32 ............................. TGAGAATCACGAACATTGGTGACACTGATCTT 101765 29 100.0 32 ............................. CTTTGGCTCATTCATCTTCACCCCCTAAACAC 101704 29 100.0 32 ............................. CCAGCGAGCGCATCTCGAAAGAGATTCAGCGG 101643 29 100.0 32 ............................. TGAAAAACAAAGATGACTTGACGCGGCGTTTT 101582 29 100.0 32 ............................. TTCGCCAGCCAGTGGGGCGCGTTTGATGAAAC 101521 29 100.0 32 ............................. GTAGAGCGAATGCAACGATTAACCGCGAGCTT 101460 29 100.0 32 ............................. GCTTGATCTGTCTCTGTTGTGTCGCTAATCTG 101399 29 100.0 32 ............................. TTACGCCACTGCATTTGCTTTCTCCTTTTGAA 101338 29 100.0 32 ............................. CACTACCGCGATGAGCTAGACCTAGCCAAGGC 101277 29 100.0 32 ............................. CCGCCGTCTTTGGTTTCCCAGGAGCCACCGAA 101216 29 100.0 32 ............................. CGATGCCCGGAAACGGCGCGCTGTCTTGAGCA 101155 29 100.0 32 ............................. AAAATTGGCTTTTCTAAAGATGCGCCGCTAGC 101094 29 100.0 32 ............................. GCTACAAAGTGCTTTTCGTTGACTTCGACCCC 101033 29 100.0 32 ............................. CGAGAAAAAACCTGAAGGTGGGCTTTCTTTCG 100972 29 100.0 32 ............................. ATTCTATTAATATCCCGCCAACGGGTTACGTT 100911 29 96.6 32 ............................C AGCGCGATAAAGCTATTGAGAAGGCCGACCGC 100850 29 100.0 32 ............................. GATTTGGAGCAGGGCACAGAATCTTGGCACCT 100789 29 100.0 32 ............................. AATTAACTTTTGGATGCGTGCGTTCTCGCTAT 100728 29 100.0 32 ............................. GCAGCAACCCGCCGCCCACGGCCCCGGCTAAC 100667 29 100.0 32 ............................. CCGGTTGCGTGAGGTGGCGAAAGAGTCGAGTG 100606 29 100.0 32 ............................. TTGCTATTAATCGCCCTGGTGAAATTTGGGCA 100545 29 100.0 32 ............................. TAGCAATCTCGATGATGAGACTGGCCTATTAG 100484 29 100.0 32 ............................. GTTTGAAACGTCAATGTTAGGCATGGCCTGCT 100423 29 100.0 32 ............................. CCTTTGCAGTGCATGATTTAGAAATTAGACAG 100362 29 100.0 32 ............................. GGCATTAACGACCGCCGTAAATCTGAGTACCA 100301 29 100.0 32 ............................. ACAGTATTTACGCGGCGCTGCATCGTTCGGCG 100240 29 100.0 32 ............................. CTGGCCTGTTTTTTGGCACTGCGCAATGACCT 100179 29 100.0 32 ............................. GGGTGGCCGACAAGCCTATCACCCGTAGTTTA 100118 29 100.0 32 ............................. CGCGTGGCCGATGTCGAACGTGCGTTGTGTCT 100057 29 100.0 32 ............................. CAAGACCCAAAAGTAAAAGCTAGGCATCTTAG 99996 29 100.0 32 ............................. TCTCCTTATGTCGCTGCCCGTAACGACTATGT 99935 29 100.0 32 ............................. ACCCGTCTGGGTGACGAAGCGCTGGAACTGAT 99874 29 100.0 32 ............................. CCGCCACAGGGCTGACAGTAGGCATTAAGTGC 99813 29 100.0 33 ............................. TGGCTAAGGGTGGCACGGTCGTTCTTGCCATCG 99751 29 100.0 32 ............................. ACTACAAAAAGGCATGGAATGCGTTTCGTGAT 99690 29 100.0 32 ............................. GGCTTGCTAAAGGACTGGGAGAACGTCAACGA 99629 29 100.0 32 ............................. TGGGAACTGCTGCATATCACGCTTCCTCAGTA 99568 29 100.0 32 ............................. CTGTTCCAAGGCAGTCCGGTATTGATGGCAAA 99507 29 100.0 32 ............................. CAGATTAGGGATAAGCGCATCGAGATCATTGA 99446 29 100.0 32 ............................. CGTCATGGTTGACGGGATGATTATTCACGAAT 99385 29 100.0 32 ............................. GTGCCCGAAGGCGGTTACCTGCAGCTCTACCG 99324 29 100.0 32 ............................. CCGAAGCGCTGGGCGTGACCGTTAACAGCGTG 99263 29 100.0 32 ............................. TATATCGTCGATGAAGAGTCGGGCTGCTGGAT 99202 29 100.0 32 ............................. CTGTAGTTACCTCTGTCAATGAAGCTATGCAG 99141 29 100.0 32 ............................. TTAAGTCGTTCCATGCTGGCTGACAGCAGGCT 99080 29 100.0 32 ............................. ATGTTAATGACCGTGTTGGCGAGTTCATGCAG 99019 29 100.0 32 ............................. TAGAAAGCCACCAAACGGTCACGCTGGGCAAT 98958 29 100.0 32 ............................. GCATGATGGGGATGGGTGGTACGGGTGGCGCT 98897 29 100.0 32 ............................. ATGTTTTGAAAGCCGTTCGATCGCGAGATCTG 98836 29 100.0 32 ............................. CTCTGATACGTCACATGATCAGCGCCGTCGAT 98775 29 96.6 32 ..........................G.. CACACACTCGCTTTGGTAGTGCTGCATGTTCT 98714 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 150 29 99.9 32 CCGATCCCCGCACCCGCGGGGATGAACCG # Left flank : GGCGATATTCAGCCACCTCCGCCAGCACCTGATTCAGTGCCACCTGCTATTCCAGAGCCACCTTCAGTTGGTGATGCTGGGCATAGGAGCGGATAAATGGCGATGCTCGTAGTGATTACAGAAGCTGTGCCGCCACGTCTACGTGGCAGGTTAGCGGTATGGCTCTTGGAGATTAGAGCCGGTGTTTACGTTGGGGACGTTAGCAGGCGAATTCGTGAAATGATCTGGGAGCAGATTGAAGCCTTGGCAGAAGATGGCAATGTTGCCATGGCCTGGGCCAGCAACCATGAGTCAGGCTTTGAGTTTCAGACTTATGGCGAAAACCGCCGAGAACCAGTCGACCATGACGGGTTACGTCTGGTGCGCTTTTTACCGCCACAAGTTAACTAACTGATTTTATTTGATCTTTAATAATTTGATCTGGTTAAAAAGTAAGCAAAATAGCCGGTAAATTTTTTATCTGCTATTTTCTTTTTGTAGATCAATTATCTACAACTAGT # Right flank : CATCGGCCAGAGTTTTCGATTTTGGCTCAGCGCCGATCCCCGCACTGCTGAGATGTTTCTGGTGCTGGTGATGCTGTCGGGGGCTTGTGTGTTCCTTCACTACGCGTGTAGGAGGAGTGACCTTTCCTGCAGTAGCAAGAATACCAAGGTCAAAATGGATTCCCGCTAAAAGCATGCGGGAATGACGGGATCGGGTGGCATGCGGGAATGACGGGGTCGGGTGGCATGCGGGATTGACGGGTTAGGGTGGCACGCAGGAAATGTTAGCCGCACAGGCAGTTCAGAAAATCACGCATTGCGGGCAGCCCGCCCATTGGCCGTGCGCTGTCGCCCTGGCAGCGTTGAAGTGTATGCCCATCGCACCGCTGCGCCGTGCTTTCGCGTCGGGCTTTTGTTGCGGGTGCGTTGGGGCTTACCACGCGCGACTCGAAATCTGCGTTACTCTCATTAAAAGCATGTGCGCGGCGGCGGGGCCGCGCACGGTAGGCATTTTCTTGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //