Array 1 310058-310940 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJTP01000002.1 Escherichia coli strain ME2L-19-411 NODE_2_length_367045_cov_16.426785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 310058 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 310119 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 310180 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 310241 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 310302 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 310363 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 310424 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 310485 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 310546 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 310607 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 310668 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 310729 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 310790 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 310851 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 310912 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 326442-327567 **** Predicted by CRISPRDetect 2.4 *** >NZ_VJTP01000002.1 Escherichia coli strain ME2L-19-411 NODE_2_length_367045_cov_16.426785, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 326442 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 326503 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 326564 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 326625 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 326686 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 326747 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 326808 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 326869 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 326930 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 326991 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 327052 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 327113 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 327174 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 327235 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 327295 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 327356 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 327417 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 327478 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 327539 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //