Array 1 19172-18844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXU01000037.1 Gallibacterium anatis strain Gerl.4224/88 contig000035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 19171 28 100.0 32 ............................ AGCCTACAGGCTATGCCAATCAGGGACAACTT 19111 28 100.0 32 ............................ TAACGGCGTTTCAAATGCTTGTACAATCTTTG 19051 28 100.0 32 ............................ ATAAGCCGTCACAATTAGCGGAATTTTTAGAT 18991 28 100.0 32 ............................ ACACCATCAACCGTTAGCCGGTTTGTAAGCAA 18931 28 92.9 32 ..C......T.................. TTCCCGAAACCATCCGATATTCGAGATTTTAC 18871 28 75.0 0 ..............GAAA.TT...A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.6 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATACTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATGTTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATATGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACCTCTAAAAAAGGGTTTTTATATTAAAATGTTCTTTAACAATTGACTCTCCTTATATCATAAGGTATTTGTGTCTA # Right flank : ACAATTACTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTGTCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGGAGAAACAAGCCAAGGCTTAATTCGGGGATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTATCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTGCTACAAGCGAACAATGCGAAGTCAATTTCGCATTTTCTGTACGCCAATAACCATTGATATAATTTGTCTTTTCGTTATGGAACATC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29103-31271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPXU01000022.1 Gallibacterium anatis strain Gerl.4224/88 contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 29103 32 100.0 33 ................................ ATATTGCAAACAAACAATAATCTGGTTAAGTAG 29168 32 100.0 34 ................................ ATTAAGTTCTCAACAAAAAACCGCTAAAAAGCGG 29234 32 100.0 35 ................................ CCCACTCCACCAAAACATCACAACTTATTGCTAAT 29301 32 100.0 34 ................................ TAAAGATAGCAAACGCATTGGATAATGGTTGCAA 29367 32 100.0 35 ................................ TCCACGTTGGGAGCATCAGCAAAAGCGGCAGGCGT 29434 32 100.0 36 ................................ TTGATAATTTTGCCCGTTTTGGCGACCGTTTGGCGG 29502 32 100.0 34 ................................ ATTGCTTTGCTCCTAATTGTTTAAGTAATGTGCG 29568 32 100.0 35 ................................ ATGGCAAAGTTGATGAATCTCTTCGCCCAGCAATG 29635 32 100.0 35 ................................ TAGGATCGTTGAGTTTCCCTGTTTCAGGTGTACCG 29702 32 100.0 36 ................................ ATAAACCGCACTTGGTCGGTAAACCTGCCGGCTATC 29770 32 100.0 36 ................................ ACTGTTCTGCCACCCAAAACGGCAAGCAACTCAGAA 29838 32 100.0 34 ................................ TTACCAAACTCAGTAAAATTATTAGGTAAATCGA 29904 32 100.0 34 ................................ AATGTGCAAGATTGGCATTCGGGTTTACAGGCAT 29970 32 100.0 35 ................................ ACTAAAGATGCTAAGACTAACATTGCTAAGGTTGG 30037 32 100.0 34 ................................ AACTCACAATTAGATTTAATACTCTCTAAAACCT 30103 32 100.0 35 ................................ GCTTTGTGATGCGTTGGATATATTAAGTCGTTATG 30170 32 100.0 35 ................................ ACATCTGCTTTGGTTAAAAGAGCAAGGGTTGATTG 30237 32 100.0 34 ................................ ACGAATGGCTAAAGGAACACTATCCCGACACCGA 30303 32 100.0 35 ................................ AAAAGTCACCTGTAGCTCGTCGGATTGGTCGGCAA 30370 32 100.0 34 ................................ TTAATGAACCCGATGAGAAATCAAATGAAGGAGG 30436 32 100.0 34 ................................ GCTGAAATTGAGGATTAATATTATGATAAGAAAT 30502 32 100.0 35 ................................ TGCACAGTTAGCAAAATCCAATGAAGAACGAGAAA 30569 32 100.0 35 ................................ TTTTCAATTACCTAATGCGGTGGTTGATGACTATT 30636 32 100.0 35 ................................ TCCTGATAGTTTTTAATTTGCGCTTGCGATATAGC 30703 32 100.0 38 ................................ TGCGCTTTGCCCACACCAGCTAAAAAGGCTTTATATTC 30773 32 96.9 35 .....A.......................... CTCTCAATGATTGGAAGTATTCGGGGGTGAATTGC 30840 32 96.9 34 .....A.......................... TTCTAAAAACGCCGTTTCGCAATCATTCGCACCC 30906 32 100.0 35 ................................ ATTCAAGTTGTACCGGCGACCTTTATGGCGTTAGC 30973 32 100.0 35 ................................ CTTTCAATGACGCCCCCAATAAAAAAGCACCTTCC 31040 32 100.0 37 ................................ AATAATCAACAGCTAACCTTTGGCTAAGGAGAAACAA 31109 32 100.0 34 ................................ ATCAAATTAAATCATTTAGTAGCCGTTGAAATTC 31175 32 100.0 33 ................................ AAGCCCGCACGGCTCGAAAAGATTAAACGCTTG 31240 32 90.6 0 ...........................T..GT | ========== ====== ====== ====== ================================ ====================================== ================== 33 32 99.5 35 CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGCGATATTACTCCGGATCAATGGGTTAAACTCAAAACTAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTATCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGCGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCATTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATTCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTGGCGAAATAGGGGAAGTAAGCCTTTATTTTTGCTAATGTTTTAGTATATGCT # Right flank : TCAATACCAAATCATCTCAGTTGGCATACATCTCTTTTTAACAATTAAGATCCACTAAAAATGTCGTCATTAATCATTACCTAACACATTCAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACTGCCTGGCTTTCCAATAAATTATGATTTTTTTCTGCCACTAACTGTAACTTCCGTTGTAATTCAGTGGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTGCGGTATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTCTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //