Array 1 137820-136172 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXD01000001.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 strain NBRC 15030 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 137819 36 86.1 78 .AAT.TA............................. CAATAGTACAAACACAATCATCACTGCCTTGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGAGTGTTTGT 137705 36 86.1 78 .AAT.TA............................. TGGTGCTACTTTTGGAGCAATAGTGGCTGGGTTGTGGTTTACAAACACCAAAATAATATTTTTTATAGGTGTGTTTGT 137591 36 86.1 30 .AAT.TA............................. TGAATGGATTCTTGCTAGAGAAAAAGACAT 137525 36 100.0 30 .................................... TGAATCCATTGAATCAATGTCCGCAGATAC 137459 36 100.0 30 .................................... TGCACGGATAACCGAAAAAATAAGTCTGAT 137393 36 100.0 30 .................................... CTTTGCCTTCAAATGAATTAATGGCATCAA 137327 36 100.0 30 .................................... AGTTTCTAAATTGAAAGATTTAGAACACTT 137261 36 100.0 30 .................................... AATGGTTAAGACGGCTTGGAGGCTCTGAAA 137195 36 100.0 29 .................................... TACATTGGAACTGCACCGTGTTAGCAGTT 137130 36 100.0 29 .................................... CGTACTTTTAAGGAGCAGACTGATTTATG 137065 36 100.0 30 .................................... AGATAGAAGCTACATCAGCTTATTTCGACA 136999 36 100.0 30 .................................... AACGCAGTAATAGTTAAATCAGACCTTGAT 136933 36 100.0 30 .................................... TTTTGTACCTGTGGAATTAAAGTTACCCCG 136867 36 100.0 30 .................................... AATGCAACAAAAGGAATTTCAAACCAAAGT 136801 36 100.0 30 .................................... TCGTTTGAGAATTATAAACATTTCCTGTCT 136735 36 100.0 30 .................................... GTACCGCTCTCCGCTAATGAAAAAGCTATT 136669 36 100.0 30 .................................... TCAAATATGAAAATATCCAAAGCAAGAAAA 136603 36 100.0 30 .................................... GCATTTTTCAAAACAAAATAAGAAAGGCTT 136537 36 100.0 30 .................................... TTATCTCGTGTGAACTGGATGAGACCGACA 136471 36 100.0 30 .................................... TTTACAGCCGATAAGTTGGAAAGCATTTCC 136405 36 100.0 30 .................................... TTTACAGCCGATAAGTTGGAAAGCATTGCC 136339 36 100.0 30 .................................... ATAGTAAGCCTAATTTTTCTAGGCGTGGCA 136273 36 100.0 30 .................................... GTTTTGAATTTAAAAGAAAAAACCCTTAAA 136207 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================================================== ================== 24 36 98.3 34 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Left flank : TTTCGCTCAACTTATTACATTGGAATGACAAATAACTTGGGATTGCGATTACTTCAACATAAAGAAAATATAGAAAAAGGAATTAAAACATTTGCCTCTAAATACAATATTGAGTTTTTGGTATTTTACGAAAAGTTTACTTGGGTTCAAAAGGCAATAGAAAGAGAAAAAGAATTAAAAGGGTGGAAAAGAGAAAAAAAATTAGAATTAATTAGAAATTTTAATCCAAATTTTGAATTTTTAAACGATCGATTTATGTAAGAAAATAAATGATTCGATTTGTCATTCCGACGAAGGAGGAATCACATAACATGAGTAACAAATGCGATTCCTCCTCCGTCGGAATGACAAAAAGGAGACAAAAAGTTCTTTGACATACGTTTTCATGGTCTTAAACAGCCAAACCACAAAGACGATGTAAGAGTAATCTGTGCATCAGTGGCAATTTTAAAGTTGTGGTTTACAAACACCAAAATAATATTTTTTATTGGTGTGTTTGT # Right flank : AGTTGGCTTGTTGCCTTCTGATATTCAAGGGATTAATTGTAAATATCGTTATAAAAAATGCCTCTTTATAGGACTGATAACCCTATATTGAGGCATTTTTTGTTTTCTAAAACAGCTCTAGCTGTACAGGCATTGGTACTTTTGGCAACGGAGCTTGGCCCCAATAATTCATAATATTGCCAAACTGTTTGTCGGTTATCCGTACAACACTCACCTTGCCTAGTGGGGGCAACAATTGTACGATACGTTTTTCGTGTACGTCGGCACTCTCGCTACTGGCACAATGTCTTGTATATACAGAATATTGCATCATCGTAAATCCGTCGTTCAATAATTTGTTTCTAAAAACCGAGGCATCTTTACGGTTTTTTTTTGTTGCTGTGGGCAGGTCAAAAAATACAAACAACCACATTATCCGATATCCGTTGAGTTCCATAACTTGGCATATTTTATTTTTTTGCGTTCGCCCGTATAACATTGTTGTAGCGAGCTGGCTGTTT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 12888-10063 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJXD01000065.1 Flavobacterium branchiophilum NBRC 15030 = ATCC 35035 strain NBRC 15030 sequence065, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 12887 36 100.0 27 .................................... GTTTATCCGAAGAGAAACGTCCTGTTT 12824 36 100.0 26 .................................... ACATATAGTAAGATATTATTTTTTCG 12762 36 100.0 27 .................................... AAGAATAGTAATTTTTTTGAGGCATTG 12699 36 100.0 27 .................................... AGTGCGACTTGAAGCTACAAATAAAGA 12636 36 100.0 27 .................................... ACAATTATTTTAGCGGTATTAATCTTG 12573 36 100.0 27 .................................... GAGCATGGGAAAAAGCATTCAAAAAGA 12510 36 100.0 27 .................................... GCTAAAGAAACGGATACTATCGAGCTT 12447 36 100.0 28 .................................... GTTTCTAAATGCAAGCATTTTATTTTAT 12383 36 100.0 26 .................................... TCCAAGCCGTTTTTGATGTTTACGCT 12321 36 100.0 26 .................................... AGTTAATTCTTCTGAATATTGTTCTT 12259 36 100.0 27 .................................... AACTTCTAAGATATTCGTACTTTCTGA 12196 36 100.0 29 .................................... TTCTCATGTTTTATTTATTTTTTACAAAA 12131 36 100.0 29 .................................... TGGAAAATCTGTAGTTGATGATAGAATTG 12066 36 100.0 27 .................................... TTAGATAACTTTTTGGATATTAAATAA 12003 36 100.0 28 .................................... GACGACAGGGGGCGTACGATTGGTTTTG 11939 36 100.0 27 .................................... ATTTCGGCCTGTTTGCTGGGAGCTTGT 11876 36 100.0 28 .................................... TTTTGGTCTACTTTAGTAAGTTTTACCC 11812 36 100.0 27 .................................... GTATTTAAGTTTTAGATCTTCAAATGT 11749 36 100.0 28 .................................... GGATTGAATTTGCAACACTTGAAAAACA 11685 36 100.0 26 .................................... TTATGGTAAAGAGTTCCAACTTAAAG 11623 36 100.0 27 .................................... AATCGTAGTACTTCCTAACCAATTTAT 11560 36 100.0 29 .................................... GCGTAGTGTGCATCTTGAGCCGATAATAG 11495 36 100.0 28 .................................... ATTCAATGGCACTCATACCTAATTCCTT 11431 36 100.0 27 .................................... TACTAAAAAGCTAATTAGTATTCCAAT 11368 36 100.0 27 .................................... GTTGGGATTGATCCCGACATTAAAAAA 11305 36 100.0 26 .................................... TGGTACCGACACTCACGGAATAAAAA 11243 36 100.0 27 .................................... GTTGATCTTGCCACTTCAACGAATTAA 11180 36 100.0 28 .................................... GTCAATTGGCTATAATGTTTAAATTGAA 11116 36 100.0 28 .................................... GCTGGGTATCACGGTTGGGTAAAAACTA 11052 36 100.0 28 .................................... ACGTTATTAAAATGTTTGCAGGAATTTT 10988 36 100.0 28 .................................... CGTTAGCTTCAATCACATTTCCTTTGAT 10924 36 100.0 28 .................................... GGATGGTGTACTTTTAGCATATCTTCTT 10860 36 100.0 29 .................................... TAGTTGAAAACGTTGCTAAAGTGAATTAT 10795 36 100.0 27 .................................... AATTGTGTGTACTGGACTACGCTCATT 10732 36 100.0 28 .................................... TCCCCTGCAATTTCTCGGAACTTTCTCG 10668 36 100.0 26 .................................... CTCTTGGATGAATGCTTGTTTTTTTA 10606 36 100.0 27 .................................... TGGCACATTTTACCAAAGAACCTTCGT 10543 36 100.0 27 .................................... GAGTTAAACTATTACAGTCCAACCAAG 10480 36 100.0 28 .................................... ATAGTACAATACCTGTCGCTAAAGTTGA 10416 36 100.0 28 .................................... AATATCTATGGGCGGCCAGCATCAGACT 10352 36 100.0 27 .................................... CAAAAACAATTCAAAGATCATCTTGGA 10289 36 100.0 29 .................................... AAACGCCTTTGTAAGTGAAATTAGCATCG 10224 36 100.0 27 .................................... CTTGAAACTATACAGAACCTAAAAACG 10161 36 100.0 27 .................................... GTTGATGATGCTACGGGCAGGCATCAC 10098 36 94.4 0 ..................................TA | ========== ====== ====== ====== ==================================== ============================= ================== 45 36 99.9 27 GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Left flank : AAAAATAAAAAGTAAAAAATATGTTATTAGTATCCTACGACATCAGCAACAACAAAACACGAACCCATTTTTCAAAATATTTGAGCAAATTTGGTCATCGGTTGCAATATTCGTTGTTTGAGATAGACAACAGCAAGCGGATTTTGAATTTGATTCAAATTGAAATTAAGACCAAATATGCCAAACAATTTGAAGAAACGGATAGCATTATGATTTTTCAGATGAGTCCGAGTTGTGTTATTACAAAATATGGTTATGCCAAGCATCAGGACGAAGATTTGGTTTTGTTTTGAAAAAAAAAACTTTGAATTAGAGAAAAAAAGTTATAGGTTTGCATCGGATTGCATGGTTACTATTGTAAAAAAATGCAAACCTGGGTCTTAATAATAATAATACTGACAAAAGGCATGAAAACAAGCTTTCGAATGCTGTTTTTTTATTTAAAAGCAACCAAAAACGGTAAAAAAGGGTTGTTTTTGTGTCATTTTGGCAGTGTTAGA # Right flank : GAAAATGCCACAGATGCACAGATGTTTTTTTTTAAATCTCGAATTTCTACTATGGGGTTGTGGTTGATGATTGGTGGTTTGTGGTTGATGGTTGATGGTTGATGGCTGATGGTTGATGGTTGTTGGTTGATGGTTGTTGGTTGATAGCTGAAACTTGAAACTTGAAACCTGAAACTTGAAACTTCTAACCTCTAACTTCTAACTTCTAACCTGAAACCAAAGAGTGCCGTCAAAAGTTTGGCTATCGGAGCCATTTTTTGGCTTTTTCTTGAATGATGGCGGCTACTGTTCTGTTTTCGATTTTGCTTTCGAGCCACGAAATGATGTCTAAATACAAAAAGGCTCTTTTTTCATAAGGGTGGTTTTCGTATTGCAACAATTGGGTGTGTAGTTTTTTAAACGCTGATTTGAGTTCGCTTGGGTATATTTTGTCTAAATTTTTCAAAAACTTGATCATTTCTTTCTGAACTTCGTGCAAATCGTTCATTTTGATCAAATAT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAACCACTTTAAAATTTCTACTATTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //