Array 1 3525143-3522368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085143.1 Halomonas sp. NyZ770 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3525142 29 100.0 32 ............................. CAGGAGTTTACCCCATGGATTCATATACAGCA 3525081 29 100.0 32 ............................. CACATGGTGACCGGGAAGACGATGCGCGTTGA 3525020 29 100.0 32 ............................. GAAATGCGCTTTGAAGCGGTTGCCGTGTCAGG 3524959 29 100.0 32 ............................. AAAGCAGGCATTAGAAGATTACCGCTTAGAAC 3524898 29 100.0 32 ............................. CCCCTTCATGGTTCTCCTATGTTGATGCAAAC 3524837 29 100.0 32 ............................. CACATTCCAAAGTCTCGGATAACCACTTTGGC 3524776 29 100.0 32 ............................. CGTTAGAGTCTTATGTTGCATTGTTCGCAGCT 3524715 29 100.0 32 ............................. CAATCCCTCCTTTTTGGGCACTGAGGGCGTGT 3524654 29 96.6 32 ............................A AAACCAATAGTAGAAAGATTATGACCACTAAC 3524593 29 100.0 32 ............................. TGCTTTGTCTATCATTGATACTGCACTCAGGT 3524532 29 100.0 32 ............................. ACTACTTCGGGGGTGCAGCATGAACGTTGCTG 3524471 29 100.0 32 ............................. ATATTGGCGCGCATGATCGGGGTCTGGTCCTG 3524410 29 100.0 32 ............................. CGCGAGCTGAACCTGCGTGGTGAGTGGGTGCC 3524349 29 100.0 32 ............................. TCGTTTTACCCTTATTTACAGCGCCTTTTTTA 3524288 29 100.0 32 ............................. CGCAGGCCCGCACCCAAGAGATAGCGGACGAA 3524227 29 100.0 32 ............................. TTGTCAATCGGCGTGGCCTTAGCCATCGGTGC 3524166 29 100.0 32 ............................. TTTGGTATCAAGCCGCCTGAGTGCTTTGTCTA 3524105 29 100.0 32 ............................. GCCGCTAACGTGGCCGGCACCATGATGGCGGC 3524044 29 100.0 32 ............................. TCATAAACATAATCAGAAATGGCATCCTGCAA 3523983 29 100.0 32 ............................. CTCATGGAGAAATGGCTCTCTGCCCAGCACAC 3523922 29 100.0 32 ............................. GCGTGACCCGTTACGCAATCGAGGTTAGCACT 3523861 29 100.0 32 ............................. AGCGGTTAGCGGCAGTAGCGGGCAGTTGCGCC 3523800 29 100.0 33 ............................. GGGAAATAATATGTCAAGGCTACGATTCACAAC 3523738 29 100.0 32 ............................. CCGCCAGCCGCCGCAGCTGCCGCGCCCAGGGC 3523677 29 100.0 32 ............................. CAATATAGGAGAGACCAGAGGGGGCCGTTATA 3523616 29 100.0 32 ............................. CCGCTCAAACGGCAGAACAACGGGCAATCACC 3523555 29 100.0 32 ............................. GCTGAGTTCAGTCTGCGACCATGTCGCCAGCA 3523494 29 100.0 32 ............................. GAAAGCCGGAAGAGATACCACCCTGAACACCA 3523433 29 96.6 32 ............................T GCTTGGTACCGTGGCTATCGGGGTCGTTATTG 3523372 29 100.0 32 ............................. TAATCGCGGATGGCTACGGCACGTTCATAACC 3523311 29 100.0 32 ............................. CCATTCACGCGTGCCGCCGTATCTGGGCGAGC 3523250 29 100.0 32 ............................. GCCTGGCGAGCGCTTTCATCAAGCGTGCGTCC 3523189 29 100.0 32 ............................. GGCTGGGGACCAGGTGACTCCGAAAGTCCGTG 3523128 29 100.0 32 ............................. CTCCGCGTCCTCCCCGACGCCAATCAGGTAAT 3523067 29 100.0 32 ............................. AGCTGCTGGCCATCGACTGGATCGCGCCGAAG 3523006 29 100.0 32 ............................. TCCATACGAGACATATCCCACTTATTGGGCTC 3522945 29 100.0 32 ............................. CTACGTGCTGGGTCAGGCTGCTGTAGGTGAGC 3522884 29 100.0 32 ............................. TATGGCGTCAGCCGCATCATCCAGGTGCTGGT 3522823 29 100.0 32 ............................. CTGAGCTTGCCTGTTTTGACGAACTCCGTCAG 3522762 29 100.0 32 ............................. ATAACGAATATGATCAATGGAGGGAGCGTCAG 3522701 29 100.0 32 ............................. TCTTCCAAATCATCCCGACGTTGCGGGTATGG 3522640 29 100.0 32 ............................. GGTGAATTAACCACCGGAGGTAACATGAACAA 3522579 29 100.0 32 ............................. TGCCCGCTCGCAATTTCAAGCAATACAACAAG 3522518 29 96.6 32 ........C.................... GGCGGAACGTACCGCCGAGCGGTTGGAGGTTA 3522457 29 96.6 32 ........C.................... CCCGTTGACAAACTGAAAATTATGGGGCTTGA 3522396 29 96.6 0 ........C.................... | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.6 32 CCGTTCCCTACAGGCGTGGGGATGAACCG # Left flank : GCGAGATCGAACCGCCACCACCGCCAGCTGACGCCGTACCGCCCGCCATCCCCGAACCGCCGTCGGTGGGCGATAGCGGCCATAGGAGTCAATGAGATGGCCATGCTCGTCGTTGTCACCGAAGCCGTGCCACCTCGATTACGCGGGCGGCTGGCCGTCTGGCTACTGGAGATTCGCGCTGGCGTGTATGTGGGCGATGTCAGTAAGCGGATTCGAGAAATGATCTGGGAACATGTCAACGTCCTGGCCGAGGATGGCAATGTCGTCATGGCCTGGGCCAGCAACCATGAGTCCGGCTTCGAGTTCCAGACCTATGGTGCTAATCGGCGTGAGCCTTGGGATCACGATGGGTTGCGTCTGGTACGCTTTCTGCCCGCCGAAGCTAAGTAGCTGATAATCCTAGATCTTTAAAAATGCAGTTTGTACAAAAAATAAGCAAAATCGTTGGTGGAATTTCTGCTGTCGATTTTTCTTTTTTAGATCAATTATCTACAGTTAGA # Right flank : ATTCGCTCTGGCGAAGAGCAATACACAGTACCCCGTTCCCCATGCTCCAGCTTGATGCGGTGTTCGCTGCGTTGAGGGGCAATTAGCTCGGCGTGGCGAGCGATCGGCTGTAAATCTTCCGGATGCTCTATACGATCCACCATGAGCAGGCCATCCAGGTGGTCTACCTCGTGCTGGATCAGTTCAGCCAATGCCGCTGAAAGGTGATGCCAGTGGCAGGTTTTGCCGTTTTCGTTTTGGTACGTCAGGCTGATACTGGCGTGGCGCCTGACATTGGCAATATGGCCGGGCACGCTCATGCAGTCGTCCCAAACCGGCCGCGTCTCTTGACTTCGCCAGACAATGGCTGGGTTGATCAAGGTAAATGGGCGGCCGCCCAACTGAACCGCCACGATGCGCAAGGGTTCGCCTATTTGAGGGGCAGAGAGGGCACGGCCAACGCCGGTGCGTGCTTTGAAATCGACAAGTGTGGCATGTAGTTCGGAAATTACCTTTGCGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCTACAGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3538129-3535903 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP085143.1 Halomonas sp. NyZ770 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3538128 29 100.0 32 ............................. CGTTGTCCCGCAGACCGCGCATGTACTCCATG 3538067 29 100.0 32 ............................. CCGCGGTACTCTTCAGCGGTCTGGTCGCCTTG 3538006 29 100.0 32 ............................. TAATTTCTTGACGGATAACGCCTAAATTATAG 3537945 29 100.0 32 ............................. TACACCCATGCCTCAACAGCGCCTGCTGGGGC 3537884 29 100.0 32 ............................. GACGTTGCTGATATTGAATTAGTATTGGGTGA 3537823 29 100.0 32 ............................. GACAGTCAGGCGTCAGCCGCGATCCGCCAGAA 3537762 29 96.6 32 ............................A GACAAACACGCTCTGATGGAGGCCAGCCGGGC 3537701 29 100.0 32 ............................. CGGCTACGCTCTCCGGTATTGTTTCTCGCTGG 3537640 29 100.0 32 ............................. TGGTGGACGCGGTGCCTTGGTAGACGCCGATA 3537579 29 100.0 32 ............................. TTGGCATGAAACGAATCGGAGGCCTCGGCTAA 3537518 29 96.6 32 ................T............ CTGCTCGCCAGCCCCTTCCGTGCTTGGTGTGA 3537457 29 100.0 32 ............................. CGCATGAAGGCCGAGCAGGAAGAACGCCGTAA 3537396 29 100.0 32 ............................. CATTCGGATGTAGCCAAATGCTGGGCACGCAT 3537335 29 100.0 32 ............................. AGAATGCCCTCGGGGTCAGCGCGCTACGGGCC 3537274 29 100.0 32 ............................. TCTACTGTGGCGCGACTACAGAGAAGCAAGCC 3537213 29 100.0 32 ............................. GCAACGAGTTCTCGCTGATTGAGCGCGACGGT 3537152 29 100.0 32 ............................. AGATCGGCATCAAGTACAACACCTACTACCGC 3537091 29 100.0 32 ............................. ATAGAGCTGCCGTGGACCCCGGTAGTCGCCAT 3537030 29 100.0 32 ............................. TTACAGCAGCACCGACAGCAGACATTGCAGAC 3536969 29 100.0 32 ............................. GCGATGAGCGCCGGCCGGATGAGACAGAATGA 3536908 29 100.0 32 ............................. GCGGAGAAAAACAACCGGCGCATCGAGATTCA 3536847 29 100.0 33 ............................. TGTATACGCCTGTCGCCGCACCGTTGCCGATGC 3536785 29 100.0 32 ............................. CTCGAACTCCGAGCGGGCATAGGGCGTTAATC 3536724 29 100.0 32 ............................. CAGCGTGTGACGATTCCAGCCGTGACGGGATG 3536663 29 100.0 32 ............................. CACGAGCAACCCAGGCGGCAAACCGCTACATC 3536602 29 100.0 32 ............................. GTCAACTACGCGGCCGAAGCGGCTGGCCAGGC 3536541 29 100.0 32 ............................. TCCATGCGGGCGACTTCGCTACCAACAGGAAG 3536480 29 100.0 32 ............................. GTGCCGCTGGGTAGCCGGTAGCTGACCACCAC 3536419 29 100.0 32 ............................. ATCATACAACGGTTGGAAACAACCGCTTTGCG 3536358 29 100.0 32 ............................. TATGGTGTTTATACCGCTGCCCAGGCTCGAGA 3536297 29 100.0 32 ............................. CTGCGAAAGCCCGCGAGTGCTGGAGGTGCCGC 3536236 29 100.0 32 ............................. GGTCAGGCGTCAATAGGTAGGCCGGGGCGTTG 3536175 29 100.0 32 ............................. TGTTGAGGCCAAGAAAGGCAAGGGCACTACGT 3536114 29 96.6 32 ............................A GCAGCTCCATTGGGCAGCTACCGCTCGGAGTC 3536053 29 100.0 32 ............................. GGATGTCGCTAATGGGTATGGCGCACGACGGT 3535992 29 100.0 32 ............................. TTCGAGACGAGAAATAGAGTTAGAAGATAAAC 3535931 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.6 32 CCGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GGGTAGAGTTACCCGCCGCGGTGGATTGCGTGAAGCTCAATCAGCGTCTGGCGCAGCATGCCATCCACGTGGCGCCGGGCTCGCTGTTCTCCGCCTCCGGCAAGTTCCGCCAGTGCCTGCGGCTGAACTATGCGTTTACGCTCACCCCCGCCATCGAAGACGCGGTGCGAACGGTAGGTGAGCTTGCCACTGAGATGGTGGAGGAGGCGCAGGCGTCGCTCGTATAAAAACGACAGAATCAGTCAGTAAGCACATCCAATAGCGCCCTGCACGAGTCGTCTCCCATGAGTGAATGCGAATGCCATAAGAGAGACCTCACTTCTTGAAAACGCTGCATACGTATACGATTGCGCGAGGCTTGGTGCGATTTTTATAGGTTTCTGCAACATACTGATTTTACTGTTCTTTAATAATATTGTTCTGGTCAAAAATCGATCTAAACCGCTGGTGAACTTTCTACTGAACATTTTTATCTTGCAGAACAGCCATCTACAATTAGT # Right flank : AGTTGAAGGGAGCGTTTTCTGGCTGAAGTGGTCCATTGTAAACATAGGAATACACTGTGGACGGCGATCAGGCTAGTGCCTCCAGGATCATCGACTGAATATTCATATCTAAGGCTGGTGTGGAGCTAGAAGTGCGTCTGGAGGTATGAATTCTTGCAAATTTATAACTCTGGGGTTATTTTTTAATTGACCAAAAGAACAAGGAGGAAGGGTGAAAAGCAAGGATGTCATCAAGGAGATGGAAGCTGATGGATGGTATCTAGATCGTGTTAGTGGGAGCCATCACGTATTCAAGCACCCTACCAAGCTCGGCAGTGTGCCCGTGCCTCATCCGAAAAAGGATTTGCCTAAGGGCACCATCCACAATATCAGAAAACTTGCGGGGCTCAGGTAGCTCGGCCGTTCAGGAGGTAACTCATGCAATATCCGGTTGCTATCGAATGGGGCGATGAACACACCGCCACCGGTATCGTCATTCCGGACATTCCCGGTGCTGTGAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //